Light-Induced Structural Changes in a Putative Blue-Light Receptor with a Novel FAD Binding Fold Sensor of Blue-Light Using FAD (BLUF); Slr1694 of Synechocystis sp. PCC6803

Biochemistry

Volumn 43, Issue 18, 2004, Pages 5304-5313

  Masuda, Shinji ^a   Hasegawa, Koji ^a   Ishii, Asako ^a   Ono, Taka Aki ^a  

^a INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ENERGY ABSORPTION; FOURIER TRANSFORM INFRARED SPECTROSCOPY; MOLECULAR STRUCTURE; SENSORS;

LIGHT PERCEPTION; LIGHT SENSING; STRUCTURAL CHANGES;

BIOCHEMISTRY;

FLAVINE ADENINE NUCLEOTIDE; OLIGOMER;

ARTICLE; BIOSENSOR; BLUE LIGHT; BLUF DOMAIN; CHROMATOPHORE; CYANOBACTERIUM; EUGLENA GRACILIS; FLUORESCENCE; FOURIER TRANSFORMATION; ILLUMINATION; INFRARED RADIATION; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN PROCESSING; PROTEIN STRUCTURE; RHODOBACTER SPHAEROIDES; SPECTROSCOPY; SYNECHOCYSTIS;

BACTERIAL PROTEINS; CARBON ISOTOPES; CYANOBACTERIA; DEUTERIUM EXCHANGE MEASUREMENT; DROSOPHILA PROTEINS; EYE PROTEINS; FLAVIN-ADENINE DINUCLEOTIDE; FLAVOPROTEINS; LIGHT; NITROGEN ISOTOPES; PHOTORECEPTORS, INVERTEBRATE; PROTEIN BINDING; PROTEIN FOLDING; RECEPTORS, G-PROTEIN-COUPLED; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EUGLENA; EUGLENA GRACILIS; NEGIBACTERIA; RHODOBACTER; RHODOBACTER SPHAEROIDES; RHODOPSEUDOMONAS; SYNECHOCYSTIS; SYNECHOCYSTIS SP.;

EID: 2442559284     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049836v     Document Type: Article

References (46)

1. Briggs, W. R., and Huala, E. (1999) Bule-light photoreceptors in higher plants, Annu. Rev. Cell Dev. Biol. 15, 33-62.
2. Lin, C. (2000) Plant blue-light receptors, Trends Plant Sci. 5, 337-342.
3. Sancar, A. (2003) Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors, Chem. Rev. 103, 2203-2237.
4. Crosson, S., Rajagopal, S., and Moffat, K. (2003) The LOV domain family: photoresponsive signaling modules coupled to diverse output domains, Biochemistry 42, 2-10.
5. Cashmore, A. R. (2003) Cryptochromes: Enabling plants and animals to determine circadian time, Cell 114, 537-543.
6. Masuda, S., and Bauer, C. E. (2002) AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides, Cell 110, 613-623.
7. Iseki, M., Matsunaga, S., Murakami, A., Ohno, K., Shiga, K., Yoshida, K., Sugai, M., Takahashi, T., Hori, T., and Watanabe, M. (2002) A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis, Nature 415, 1047-1051.
8. Gomelsky, M., and Klug, G. (2002) BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms, Trends Biol. Sci. 27, 497-500.
9. Kraft, B. J., Masuda, S., Kikuchi, J., Dragnea, V., Tollin, G., Zaleski, J. M., and Bauer, C. E. (2003) Spectroscopic and mutational analysis of the blue-light photoreceptor AppA: A novel photocycle involving flavin stacking with an aromatic amino acid, Biochemistry 42, 6726-6734.
10. Okajima, K., Yoshihara, S., Geng, X., Katayama, M., and Ikeuchi, M. (2003) Structural and functional analysis of a novel flavoprotein in Cyanobacteria, Plant Cell Physiol. 44 (Suppl.), 162.
11. Noguchi, T., and Sugiura, M. (2002) Flash-induced FTIR difference spectra of the water oxidizing complex in moderately hydrated photosystem II core films: effects of hydration extent on S-state transition, Biochemistry 41, 2322-2330.
12. 1 FTIR difference spectrum of oxygen evolving complex. Biochemistry 42, 13170-13177.
13. Swartz, T. E., Corchnoy, S. B., Christie, J. M., Lewis, J. W., Szundi, I., Briggs, W. R., and Bogomolni, R. A. (2001) The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin, J. Biol. Chem. 276, 36493-36500.
14. Corchnoy, S. B., Swartz, T. E., Lewis, J. W., Szundi, I., Briggs, W. R., and Bogomolni, R. A. (2003) Intermolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1, J. Biol. Chem. 278, 724-731.
15. Swartz, T. E., Wenzel, P. J., Corchnoy, S. B., Briggs, W. R., and Bogomolni, R. A. (2002) Vibration spectroscopy reveals light-induced choromophore and protein structural changes in the LOV2 domain of the plant blue-light receptor phototropin 1, Biochemistry 41, 7183-7189.
16. Abe, M., and Kyogoku, Y. (1987) Vibrational analysis of flavin derivatives: normal coordinate treatments of lumiflavin, Spectrochim. Acta 43A, 1027-1037.
17. Socrates, G. (2001) Infrared and Raman Characteristic Group Frequencies, Wiley, Chichester.
18. Wilde, A., Fiedler, B., and Börner, T. (2002) The cyanobacterial phytochrome Cph2 inhibits phototaxis towards blue light, Mol. Microbiol. 44, 981-988.
19. Ng, W.-O., Grossman, A. R., and Bhaya, D. (2003) Multiple light inputs control phototaxis in Synechocystis sp. strain 6803, J. Bacteriol. 185, 1599-1607.
20. Hellingwerf, K. J. (2002) The molecular basis of sensing and responding to light in microorganisms, Antonie van Leeuwenhock 81, 51-59.
21. Crosson, S., and Moffat, K. (2001) Structure of a flavin-binding plant photoreceptor domain: Insight into light-mediated signal transduction, Proc. Natl. Acad. Sci. U.S.A. 98, 2995-3000.
22. Crosson, S., and Moffat, K. (2002) Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch, Plant Cell 14, 1067-1075.
23. Salomon, M., Eisenreich, W., Dürr, H., Schleicher, E., Kneib, E., Massey, V., Rüdiger, W., Müller, F., Bacher, A., and Richter, G. (2001) An optomechanical transducer in the blue light receptor phototropin from Avena sativa, Proc. Natl. Acad. Sci. U.S.A. 98, 12357-12361.
24. Iwata, T., Tokutomi, S., and Kandori, H. (2002) Photoreaction of the cystein S-H group in the LOV2 domain of Adiantum phytochrome 3, J. Am. Chem. Soc. 124, 11840-11841.
25. Giovani, B., Byrdin, M., Ahmad, M., and Brettel, K. (2003) Light-induced electron transfer in a cryptochrome blue-light photoreceptor, Nat. Struct. Biol. 10, 489-490.
26. Abe, M., Kyogoku, Y., and Kitagawa, T. (1986) Infrared spectra and molecular association of lumiflavin and riboflavin derivatives, Spectrochim. Acta 42A, 1059-1068.
27. 18O]-enriched flavin, J. Biochem. 124, 200-208.
28. Iwata, T., Nozaki, D., Tokutomi, S., Kagawa, T., Wada, M., and Kandori, H. (2003) Light-induced structural changes in the LOV2 domain of Adiantum Phytochrome3 studied by low-temperature FTIR and UV-visible spectroscopy, Biochemistry 42, 8183-8191.
29. Lively, C. R., and McFarland, J. T. (1990) Assignment and the effect of hydrogen bonding on the vibrational normal modes of flavins and flavoproteins, J. Phys. Chem. 94, 3980-3994.
30. Hazekawa, I., Nishina, Y., Sato, K., Shichiri, M., Miura, R., and Shiga, K. (1997) A Raman study of the C(4)=O stretching mode of flavins in flavoproteins: hydrogen bonding at the C(4)=O moiety, J. Biochem. 121, 1147-1154.
31. Laan, W., van der Host, M. A., and Hellingwert, K. J. (2003) Initial characterization of the primary photochemistry of AppA, a blue-light-using flavin adenine dinucleotide-domain containing transcriptional antirepressor protein from Rhodobacter sphaeroides: A key role for reversible intramolecular proton transfer from the flavin adenine dinucleotide chromophore to a conserved tyrosine?, Photochem. Photobiol. 78, 290-297.
32. Pellet, J. D., Becker, D. F., Saenger, A. K., Fuchs, J. A., and Stankovich, M. T. (2001) Role of aromatic stacking interactions in the modulation of the two-electron reduction potentials of flavin and substrate/product in Megasphaera elsdenii short-chain acyl-Coenzyme A dehydrogenase, Biochemistry 40, 7720-7728.
33. Neiss, C., Saalfrank, P., Parac, M., and Grimme, S. (2003) Quantum chemical calculation of excited states of flavin-related molecules, J. Phys. Chem. A 107, 140-147.
34. Song, P.-S., Choi, J. D., Fugate, R. D., and Yagi, K. (1976) in Flavins and Flavoproteins (Singer, T. P., Ed.) pp 381-390, Elsevier, Amsterdam.
35. Nishimura, Y., and Tsuboi, M. (1978) Raman spectra of flavins: avoidance of interference from fluorescence, Chem. Phys. Lett. 59, 210-213.
36. Kitagawa, T., Nishina, Y., Kyogoku, Y., Yamano, T., Ohishi, N., Takai-Suzuki, A., and Yagi, K. (1979) Resonance Raman spectra of carbon-13- and nitrogen-15-labeled riboflavin bound to egg-white flavoprotein, Biochemistry 18, 1804-1808.
37. Nishima, Y., Shiga, K., Horiike, K., Tojo, H., Kasai, S., Yanase, K., Matsui, K., Watari, H., and Yamano, T. (1980) Vibrational modes of flavin bound to riboflavin binding protein from egg white, J. Biochem. 88, 403-409.
38. Copeland, R. A., and Spiro, T. G. (1986) Ultraviolet resonance Raman spectroscopy of flavin mononucleotide and flavin adenine dinucleotide, J. Phys. Chem. 90, 6648-6654.
39. Benecky, M., Li, T.-Y., Schmidt, J., Frerman, F., Watters, K. L., and McFarland, J. (1979) Resonance Raman study of flavins and the flavoprotein fatty acyl coenzyme a dehydrogenase, Biochemistry 18, 3471-3476.
40. Miura, R., Nishina, Y., Ohta, M., Tojo, H., Shiga, K., Watari, H., Yamano, T., and Miyake, Y. (1983) Resonance Raman study on the flavin in the purple intermediates of D-amino acid oxidase, Biochem. Biophys. Res. Commun. 111, 588-594.
41. Altose, M. D., Zheng, Y., Dong, J., Palfey, B. A., and Carey, P. R. (2001) Comparing protein-ligand interactions in solution and single crystals by Raman spectroscopy, Proc. Natl. Acad. Sci. U.S.A. 98, 3006-3011.
42. Ataka, K., Hegemann, P., and Heberie, J. (2003) Vibrational spectroscopy of an algal Phot-LOV1 domain probes the molecular changes associated with blue-light reception, Biophys. J. 84, 466-474.
43. Bowman, W. D., and Spiro, T. G. (1981) Normal-mode analysis of lumiflavin and interpretation of resonance Raman spectra of flavoproteins, Biochemistry 20, 3313-3318.
44. Kim, M., and Carey, P. R. (1993) Observation of a carbonyl feature for riboflavin bound to riboflavin-binding protein in the red-excited Raman spectrum, J. Am. Chem. Soc. 115, 7015-7016.
45. Hazekawa, I., Nishina, Y., Sato, K., Shichiri, M., Miura, R., and Shiga, K. (1997) A Raman study on the C(4)=O stretching mode of flavins in flavoenzymes: hydrogen bonding at the C(4)=O moiety, J. Biochem. 121, 1147-1154.
46. Harper, S. M., Neil, L. C., and Gardner, K. H. (2003) Structural basis of a phototropin light switch, Science 301, 1541-1544.