-
1
-
-
0031777847
-
On error-minimization in a sequential origin of the standard genetic code
-
Ardell D. On error-minimization in a sequential origin of the standard genetic code. J. Mol. Evol. 47 (1998) 1-13
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 1-13
-
-
Ardell, D.1
-
2
-
-
0014430468
-
Ammonium ion concentration in the primitive ocean
-
Bada J., and Miller S. Ammonium ion concentration in the primitive ocean. Science 159 (1968) 423-425
-
(1968)
Science
, vol.159
, pp. 423-425
-
-
Bada, J.1
Miller, S.2
-
3
-
-
0028092214
-
Amino acid substitution during functionally constrained divergent evolution of protein sequences
-
Benner S., Cohen M., and Gonnet G. Amino acid substitution during functionally constrained divergent evolution of protein sequences. Protein Eng. 7 (1994) 1323-1332
-
(1994)
Protein Eng.
, vol.7
, pp. 1323-1332
-
-
Benner, S.1
Cohen, M.2
Gonnet, G.3
-
4
-
-
0036809656
-
Did tRNA synthetase classes arise on opposite strands of the same gene?
-
Carter C., and Duax W. Did tRNA synthetase classes arise on opposite strands of the same gene?. Mol. Cell. 10 (2002) 705-708
-
(2002)
Mol. Cell.
, vol.10
, pp. 705-708
-
-
Carter, C.1
Duax, W.2
-
5
-
-
0034616450
-
On the classes of aminoacyl-tRNA synthetases and the error minimization in the genetic code
-
Cavalcanti A., Neto B.D.B., and Ferreira R. On the classes of aminoacyl-tRNA synthetases and the error minimization in the genetic code. J. Theor. Biol. 204 (2000) 15-20
-
(2000)
J. Theor. Biol.
, vol.204
, pp. 15-20
-
-
Cavalcanti, A.1
Neto, B.D.B.2
Ferreira, R.3
-
6
-
-
0014378880
-
The origin of genetic code
-
Crick F. The origin of genetic code. J. Mol. Biol. 38 (1968) 367-379
-
(1968)
J. Mol. Biol.
, vol.38
, pp. 367-379
-
-
Crick, F.1
-
7
-
-
0035478911
-
Aminoacyl-tRNA synthetases: potential markers of genetic code development
-
de Pouplana L.R., and Schimmel P. Aminoacyl-tRNA synthetases: potential markers of genetic code development. Trends Biochem. Sci. 26 (2001) 591-596
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 591-596
-
-
de Pouplana, L.R.1
Schimmel, P.2
-
8
-
-
0031582709
-
On the origin of the genetic code
-
Di Giulio M. On the origin of the genetic code. J. Theor. Biol. 187 (1997) 537-581
-
(1997)
J. Theor. Biol.
, vol.187
, pp. 537-581
-
-
Di Giulio, M.1
-
9
-
-
0033044839
-
The coevolution theory of the origin of the genetic code
-
Di Giulio M. The coevolution theory of the origin of the genetic code. J. Mol. Evol. 48 (1999) 253-255
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 253-255
-
-
Di Giulio, M.1
-
10
-
-
0034699125
-
Genetic code origin and the strength of natural selection
-
Di Giulio M. Genetic code origin and the strength of natural selection. J. Theor. Biol. 205 (2000) 659-661
-
(2000)
J. Theor. Biol.
, vol.205
, pp. 659-661
-
-
Di Giulio, M.1
-
11
-
-
17044376643
-
The origin of the genetic code: theories and their relationships, a review
-
Di Giulio M. The origin of the genetic code: theories and their relationships, a review. Biosystems 80 (2005) 175-184
-
(2005)
Biosystems
, vol.80
, pp. 175-184
-
-
Di Giulio, M.1
-
12
-
-
0033937045
-
The robust statistical bases of the coevolution theory of genetic code origin
-
Di Giulio M., and Medugno M. The robust statistical bases of the coevolution theory of genetic code origin. J. Mol. Evol. 50 (2000) 258-263
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 258-263
-
-
Di Giulio, M.1
Medugno, M.2
-
13
-
-
0030564828
-
Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
-
Dong H., Nilsson L., and Kurland C. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260 (1996) 649-663
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 649-663
-
-
Dong, H.1
Nilsson, L.2
Kurland, C.3
-
14
-
-
0022510143
-
Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
-
Engelman D., Steitz T., and Goldman A. Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu. Rev. Biophys. Chem. 15 (1986) 321-353
-
(1986)
Annu. Rev. Biophys. Chem.
, vol.15
, pp. 321-353
-
-
Engelman, D.1
Steitz, T.2
Goldman, A.3
-
15
-
-
0014003909
-
Role of the amino acid code and of selection for conformation in the evolution of proteins
-
Epstein C. Role of the amino acid code and of selection for conformation in the evolution of proteins. Nature 210 (1966) 25-28
-
(1966)
Nature
, vol.210
, pp. 25-28
-
-
Epstein, C.1
-
16
-
-
0025158208
-
Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs
-
Eriani G., Delarue M., Poch O., Gangloff J., and Moras D. Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 47 (1990) 203-206
-
(1990)
Nature
, vol.47
, pp. 203-206
-
-
Eriani, G.1
Delarue, M.2
Poch, O.3
Gangloff, J.4
Moras, D.5
-
17
-
-
0017326738
-
Editing mechanisms in protein synthesis: rejection of valine by the isoleucyl-tRNA synthetase
-
Fersht A. Editing mechanisms in protein synthesis: rejection of valine by the isoleucyl-tRNA synthetase. Biochemistry 16 (1977) 1025-1030
-
(1977)
Biochemistry
, vol.16
, pp. 1025-1030
-
-
Fersht, A.1
-
18
-
-
0013130918
-
The Darwinian genetic code: an adaptation for adapting?
-
Freeland S.J. The Darwinian genetic code: an adaptation for adapting?. Genet. Programm. Evolvable Mach. 3 (2002) 113-127
-
(2002)
Genet. Programm. Evolvable Mach.
, vol.3
, pp. 113-127
-
-
Freeland, S.J.1
-
19
-
-
0031662136
-
The genetic code is one in a million
-
Freeland S.J., and Hurst L. The genetic code is one in a million. J. Mol. Evol. 47 (1998) 238-248
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 238-248
-
-
Freeland, S.J.1
Hurst, L.2
-
22
-
-
0014024955
-
Genetic code: aspects of organization
-
Goldberg A., and Wittes R. Genetic code: aspects of organization. Science 153 (1966) 420-424
-
(1966)
Science
, vol.153
, pp. 420-424
-
-
Goldberg, A.1
Wittes, R.2
-
23
-
-
18844372361
-
On the optimality of the genetic code with the consideration of termination codons
-
Goodarzi H., Nejad H.A., and Torabi N. On the optimality of the genetic code with the consideration of termination codons. Biosystems 57 (2004) 63-73
-
(2004)
Biosystems
, vol.57
, pp. 63-73
-
-
Goodarzi, H.1
Nejad, H.A.2
Torabi, N.3
-
24
-
-
18844462433
-
On the optimality of the genetic code, with the consideration of coevolution theory by comparison of prominent cost measure matrices
-
Goodarzi H., Najafabadi H.S., Hassani K., Nejad H.A., and Torabi N. On the optimality of the genetic code, with the consideration of coevolution theory by comparison of prominent cost measure matrices. J. Theor. Biol. 235 (2005) 318-325
-
(2005)
J. Theor. Biol.
, vol.235
, pp. 318-325
-
-
Goodarzi, H.1
Najafabadi, H.S.2
Hassani, K.3
Nejad, H.A.4
Torabi, N.5
-
25
-
-
24944576058
-
The impact of including tRNA content on the optimality of the genetic code
-
Goodarzi H., Najafabadi H.S., Nejad H.A., and Torabi N. The impact of including tRNA content on the optimality of the genetic code. Bull. Math. Biol. 67 (2005) 1355-1368
-
(2005)
Bull. Math. Biol.
, vol.67
, pp. 1355-1368
-
-
Goodarzi, H.1
Najafabadi, H.S.2
Nejad, H.A.3
Torabi, N.4
-
26
-
-
28244497821
-
On the coevolution of genes and genetic code
-
Goodarzi H., Najafabadi H.S., and Torabi N. On the coevolution of genes and genetic code. Gene 362 (2005) 133-140
-
(2005)
Gene
, vol.362
, pp. 133-140
-
-
Goodarzi, H.1
Najafabadi, H.S.2
Torabi, N.3
-
27
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
Grantham R. Amino acid difference formula to help explain protein evolution. Science 185 (1974) 862-864
-
(1974)
Science
, vol.185
, pp. 862-864
-
-
Grantham, R.1
-
28
-
-
0026327996
-
A quantitative measure of error minimization on the genetic code
-
Haig D., and Hurst L. A quantitative measure of error minimization on the genetic code. J. Mol. Evol. 33 (1991) 412-417
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 412-417
-
-
Haig, D.1
Hurst, L.2
-
29
-
-
0028906228
-
Speculations on the origin of the genetic code
-
Hartman H. Speculations on the origin of the genetic code. J. Mol. Evol. 40 (1995) 541-544
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 541-544
-
-
Hartman, H.1
-
30
-
-
0017140180
-
Direct experimental evidence for kinetic proofreading in amino acylation of tRNAIle
-
Hopfield J.J., Yamane T., Yue V., and Coutts S.M. Direct experimental evidence for kinetic proofreading in amino acylation of tRNAIle. Proc. Natl Acad. Sci. USA 73 (1976) 1164-1168
-
(1976)
Proc. Natl Acad. Sci. USA
, vol.73
, pp. 1164-1168
-
-
Hopfield, J.J.1
Yamane, T.2
Yue, V.3
Coutts, S.M.4
-
31
-
-
24944445840
-
Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes
-
Ikemura T. Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes. Nucl. Acids Res. 28 (1981) 3517-3523
-
(1981)
Nucl. Acids Res.
, vol.28
, pp. 3517-3523
-
-
Ikemura, T.1
-
32
-
-
0344146524
-
Protein evolution drives the evolution of the genetic code and vice versa
-
Jimenez-Motano M. Protein evolution drives the evolution of the genetic code and vice versa. Biosystems 54 (1999) 47-64
-
(1999)
Biosystems
, vol.54
, pp. 47-64
-
-
Jimenez-Motano, M.1
-
33
-
-
0032882170
-
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
-
Kanaya S., Yamada Y., Kudo Y., and Ikemura T. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238 (1999) 143-155
-
(1999)
Gene
, vol.238
, pp. 143-155
-
-
Kanaya, S.1
Yamada, Y.2
Kudo, Y.3
Ikemura, T.4
-
34
-
-
2342637052
-
Amino acid biogenesis evolution of the genetic code and aminoacyl-tRNA synthetases
-
Klipcan L., and Safro M. Amino acid biogenesis evolution of the genetic code and aminoacyl-tRNA synthetases. J. Theor. Biol. 228 (2004) 389-396
-
(2004)
J. Theor. Biol.
, vol.228
, pp. 389-396
-
-
Klipcan, L.1
Safro, M.2
-
35
-
-
0033152412
-
Selection, history and chemistry: the three faces of the genetic code
-
Knight R., Freeland S., and Landweber L. Selection, history and chemistry: the three faces of the genetic code. Trends Biochem. Sci. 24 (1999) 241-247
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 241-247
-
-
Knight, R.1
Freeland, S.2
Landweber, L.3
-
36
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J., and Doolittle R. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157 (1982) 105-132
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.2
-
37
-
-
0018415510
-
Two types of amino acid substitution in protein evolution
-
Miyata T., Miyzawa S., and Yasunaga T. Two types of amino acid substitution in protein evolution. J. Mol. Evol. 12 (1979) 219-236
-
(1979)
J. Mol. Evol.
, vol.12
, pp. 219-236
-
-
Miyata, T.1
Miyzawa, S.2
Yasunaga, T.3
-
38
-
-
0025858457
-
Evolution and relatedness in two aminoacyl-tRNA synthetase families
-
Nagel G., and Doolittle R. Evolution and relatedness in two aminoacyl-tRNA synthetase families. Proc. Natl Acad. Sci. USA 88 (1991) 8121-8125
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 8121-8125
-
-
Nagel, G.1
Doolittle, R.2
-
39
-
-
0015217634
-
The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions
-
Nozaki Y., and Tanford C. The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. J. Mol. Chem. 246 (1971) 2211-2217
-
(1971)
J. Mol. Chem.
, vol.246
, pp. 2211-2217
-
-
Nozaki, Y.1
Tanford, C.2
-
40
-
-
6044278241
-
Biochemical evidence of translational infidelity and decreased peptidyltransferase activity by a sarcinricin domain mutation of yeast 25S rRNA
-
Panopoulos P., Dresios J., and Synetos D. Biochemical evidence of translational infidelity and decreased peptidyltransferase activity by a sarcinricin domain mutation of yeast 25S rRNA. Nucleic Acids Res. 32 (2004) 5398-5408
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5398-5408
-
-
Panopoulos, P.1
Dresios, J.2
Synetos, D.3
-
41
-
-
17444449538
-
Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
-
Percudani R., Pavesi A., and Ottonello S. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J. Mol. Biol. 268 (1997) 322-330
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 322-330
-
-
Percudani, R.1
Pavesi, A.2
Ottonello, S.3
-
42
-
-
0030946935
-
Four primordial modes of tRNA synthetase recognition, determined by the (G, C) operational code
-
Rodin S., and Ohno S. Four primordial modes of tRNA synthetase recognition, determined by the (G, C) operational code. Proc. Natl Acal. Sci. USA 94 (1997) 5183-5188
-
(1997)
Proc. Natl Acal. Sci. USA
, vol.94
, pp. 5183-5188
-
-
Rodin, S.1
Ohno, S.2
-
43
-
-
0020318628
-
Molecular basis for the genetic code
-
Shimizu M. Molecular basis for the genetic code. J. Mol. Evol. 8 (1982) 297-303
-
(1982)
J. Mol. Evol.
, vol.8
, pp. 297-303
-
-
Shimizu, M.1
-
44
-
-
0014581827
-
The genetic code and error transmission
-
Steinberger A. The genetic code and error transmission. Proc. Natl Acad. Sci. USA 64 (1969) 584-591
-
(1969)
Proc. Natl Acad. Sci. USA
, vol.64
, pp. 584-591
-
-
Steinberger, A.1
-
45
-
-
0027505057
-
Coding coenzyme handles: a hypothesis for the origin of the genetic code
-
Szathmary E. Coding coenzyme handles: a hypothesis for the origin of the genetic code. Proc. Natl Acad. Sci. USA 90 (1993) 9916-9920
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 9916-9920
-
-
Szathmary, E.1
-
46
-
-
0037063348
-
Molecular evolution from abiotic scratch
-
Trifonov E., and Berezovsky I. Molecular evolution from abiotic scratch. FEBS Lett. 527 (2002) 1-4
-
(2002)
FEBS Lett.
, vol.527
, pp. 1-4
-
-
Trifonov, E.1
Berezovsky, I.2
-
47
-
-
0019792825
-
Reasons for the occurrence of the twenty coded protein amino acids
-
Weber A., and Miller S. Reasons for the occurrence of the twenty coded protein amino acids. J. Mol. Evol. 17 (1981) 273-284
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 273-284
-
-
Weber, A.1
Miller, S.2
-
48
-
-
0013824051
-
On the evolution of the genetic code
-
Woese C. On the evolution of the genetic code. Proc. Natl Acad. Sci. USA 54 (1965) 1546-1552
-
(1965)
Proc. Natl Acad. Sci. USA
, vol.54
, pp. 1546-1552
-
-
Woese, C.1
-
49
-
-
0013997503
-
On the fundamental nature and evolution of the genetic code
-
Woese C., Dugre D., Dugre S., Kondo M., and Saxinger W. On the fundamental nature and evolution of the genetic code. Cold Spring Harbor Symp. Quant. Biol. 31 (1966) 723-736
-
(1966)
Cold Spring Harbor Symp. Quant. Biol.
, vol.31
, pp. 723-736
-
-
Woese, C.1
Dugre, D.2
Dugre, S.3
Kondo, M.4
Saxinger, W.5
-
50
-
-
0001155613
-
A co-evolution theory of the genetic code
-
Wong J. A co-evolution theory of the genetic code. Proc. Natl Acad. Sci. USA 72 (1975) 1909-1912
-
(1975)
Proc. Natl Acad. Sci. USA
, vol.72
, pp. 1909-1912
-
-
Wong, J.1
-
51
-
-
0025764914
-
An RNA-amino acid complex and the origin of the genetic code
-
Yarus M. An RNA-amino acid complex and the origin of the genetic code. J. Mol. Evol. 3 (1991) 183-189
-
(1991)
J. Mol. Evol.
, vol.3
, pp. 183-189
-
-
Yarus, M.1
|