메뉴 건너뛰기




Volumn 32, Issue 18, 2004, Pages 5398-5408

Biochemical evidence of translational infidelity and decreased peptidyltransferase activity by a sarcin/ricin domain mutation of yeast 25S rRNA

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; ELONGATION FACTOR 2; PAROMOMYCIN; PEPTIDYLTRANSFERASE; RIBOSOME PROTEIN; RIBOSOME RNA; RICIN; RNA 25S; S12 PROTEIN; S23 PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN; SARCIN; TRANSFER RNA; UNCLASSIFIED DRUG; URACIL; ALPHA SARCIN; ALPHA-SARCIN; ANTIINFECTIVE AGENT; FUNGAL PROTEIN; PEPTIDE; POLYPHENYLALANINE; PROTEIN SYNTHESIS INHIBITOR; RIBONUCLEASE; RNA, RIBOSOMAL, 25S;

EID: 6044278241     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh860     Document Type: Article
Times cited : (8)

References (40)
  • 1
    • 0033862288 scopus 로고    scopus 로고
    • Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome
    • Velichutina,I.V., Dresios,J., Hong,J.Y., Li,C., Mankin,A., Synetos,D. and Liebman,S.W. (2000) Mutations in helix 27 of the yeast Saccharomyces cerevisiae 18S rRNA affect the function of the decoding center of the ribosome. RNA, 6, 1174-1184.
    • (2000) RNA , vol.6 , pp. 1174-1184
    • Velichutina, I.V.1    Dresios, J.2    Hong, J.Y.3    Li, C.4    Mankin, A.5    Synetos, D.6    Liebman, W.7
  • 2
    • 0037062958 scopus 로고    scopus 로고
    • The involvement of RNA in ribosome function
    • Moore,P.B. and Steitz,T.A. (2002) The involvement of RNA in ribosome function. Nature, 418, 229-235.
    • (2002) Nature , vol.418 , pp. 229-235
    • Moore, P.B.1    Steitz, T.A.2
  • 3
    • 0029402157 scopus 로고
    • The accuracy center of a eukaryotic ribosome
    • Liebman,S.W., Chernoff,Y.O. and Liu,R. (1995) The accuracy center of a eukaryotic ribosome. Biochem. Cell Biol., 73, 1141-1149.
    • (1995) Biochem. Cell Biol. , vol.73 , pp. 1141-1149
    • Liebman, S.W.1    Chernoff, Y.O.2    Liu, R.3
  • 4
    • 0030580326 scopus 로고    scopus 로고
    • Mutations in yeast ribosomal proteins S28 and S4 affect the accuracy of translation and alter the sensitivity of the ribosomes to paromomycin
    • Synetos,D., Frantziou,C.P. and Alksne,L.E. (1996) Mutations in yeast ribosomal proteins S28 and S4 affect the accuracy of translation and alter the sensitivity of the ribosomes to paromomycin. Biochim. Biophys. Acta, 1309, 156-166.
    • (1996) Biochim. Biophys. Acta , vol.1309 , pp. 156-166
    • Synetos, D.1    Frantziou, C.P.2    Alksne, L.E.3
  • 5
    • 0034691271 scopus 로고    scopus 로고
    • Yeast ribosomal protein L24 affects the kinetics of protein synthesis and ribosomal protein L39 improves translational accuracy, while mutants lacking both remain viable
    • Dresios,J., Derkatch,I.L., Liebman,S.W. and Synetos,D. (2000) Yeast ribosomal protein L24 affects the kinetics of protein synthesis and ribosomal protein L39 improves translational accuracy, while mutants lacking both remain viable. Biochemistry, 39, 7236-7244.
    • (2000) Biochemistry , vol.39 , pp. 7236-7244
    • Dresios, J.1    Derkatch, I.L.2    Liebman, S.W.3    Synetos, D.4
  • 6
    • 0023405923 scopus 로고
    • Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors
    • Hausner,T.P., Atmadja,J. and Nierhaus,K.H. (1987) Evidence that the G2661 region of 23S rRNA is located at the ribosomal binding sites of both elongation factors. Biochimie, 69, 911-923.
    • (1987) Biochimie , vol.69 , pp. 911-923
    • Hausner, T.P.1    Atmadja, J.2    Nierhaus, K.H.3
  • 7
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16S ribosomal RNA
    • Moazed,D. and Noller,H.F. (1987) Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature, 327, 389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 8
    • 0028173136 scopus 로고
    • Mutational studies on the alphasarcin loop of Escherichia coli 23S ribosomal
    • Marchant,A. and Hartley,M.R. (1994) Mutational studies on the alphasarcin loop of Escherichia coli 23S ribosomal RNA. Eur. J. Biochem., 226, 141-147.
    • (1994) RNA Eur. J. Biochem. , vol.226 , pp. 141-147
    • Marchant, A.1    Hartley, M.R.2
  • 9
    • 0002826533 scopus 로고    scopus 로고
    • Structure and function of the sarcin/ricin domain
    • Garrett,R.A., Douthwaite,S.R., Liljas,A., Matheson,A.T., Moore,P.B. and Noller,H.F. (eds), American Society for Microbiology Press, Washington, DC
    • Wool,I.G., Correll,C.C. and Chan,Y.-L (2000) Structure and function of the sarcin/ricin domain. In Garrett,R.A., Douthwaite,S.R., Liljas,A., Matheson,A.T., Moore,P.B. and Noller,H.F. (eds), The Ribosome: Structure, Function, Antibiotics, and Cellular Interactions. American Society for Microbiology Press, Washington, DC, pp. 461-473.
    • (2000) The Ribosome: Structure, Function, Antibiotics, and Cellular Interactions , pp. 461-473
    • Wool, I.G.1    Correll, C.C.2    Chan, Y.-L.3
  • 10
    • 0029832599 scopus 로고    scopus 로고
    • A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA
    • Liu,R. and Liebman,S.W. (1996) A translational fidelity mutation in the universally conserved sarcin/ricin domain of 25S yeast ribosomal RNA. RNA, 2, 254-263.
    • (1996) RNA , vol.2 , pp. 254-263
    • Liu, R.1    Liebman, S.W.2
  • 11
    • 0025370161 scopus 로고
    • A single base mutation at position 2661 in E. coli 23S ribosomal RNA affects the binding of ternary complex to the ribosome
    • Tapprich,W.E. and Dahlberg,A.E. (1990) A single base mutation at position 2661 in E. coli 23S ribosomal RNA affects the binding of ternary complex to the ribosome. EMBO J., 9, 2649-2655.
    • (1990) EMBO J. , vol.9 , pp. 2649-2655
    • Tapprich, W.E.1    Dahlberg, A.E.2
  • 12
    • 0026747324 scopus 로고
    • Single-base mutations at position 2661 of Escherichia coli 23S rRNA increase efficiency of translational proofreading
    • Melancon,P., Tapprich,W.E. and Brakier-Gingras,L. (1992) Single-base mutations at position 2661 of Escherichia coli 23S rRNA increase efficiency of translational proofreading. J. Bacteriol., 174, 7896-7901.
    • (1992) J. Bacteriol. , vol.174 , pp. 7896-7901
    • Melancon, P.1    Tapprich, W.E.2    Brakier-Gingras, L.3
  • 13
    • 0014885435 scopus 로고
    • Informational suppression
    • Gorini,L. (1970) Informational suppression. Annu Rev Genet., 4, 107-134.
    • (1970) Annu. Rev. Genet. , vol.4 , pp. 107-134
    • Gorini, L.1
  • 15
    • 0029071305 scopus 로고
    • Alterations in ribosomal protein RPS28 can diversely affect translational accuracy in Saccharomyces cerevisiae
    • Anthony,R.A. and Liebman,S.W. (1995) Alterations in ribosomal protein RPS28 can diversely affect translational accuracy in Saccharomyces cerevisiae. Genetics, 140, 1247-1258.
    • (1995) Genetics , vol.140 , pp. 1247-1258
    • Anthony, R.A.1    Liebman, S.W.2
  • 16
    • 0345531092 scopus 로고    scopus 로고
    • The common and the distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure
    • Correll,C.C., Beneken,J., Plantinga,M.J., Lubbers,M. and Chan,Y.L. (2003) The common and the distinctive features of the bulged-G motif based on a 1.04 A resolution RNA structure. Nucleic Acids Res. 31, 6806-6818.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 6806-6818
    • Correll, C.C.1    Beneken, J.2    Plantinga, M.J.3    Lubbers, M.4    Chan, Y.L.5
  • 17
    • 0028058010 scopus 로고
    • Mutations in eukaryotic 18S ribosomal RNA affect translational fidelity and resistance to aminoglycoside antibiotics
    • Chernoff,Y.O., Vincent,A. and Liebman,S.W. (1994) Mutations in eukaryotic 18S ribosomal RNA affect translational fidelity and resistance to aminoglycoside antibiotics. EMBO J., 13, 906-913.
    • (1994) EMBO J. , vol.13 , pp. 906-913
    • Chernoff, Y.O.1    Vincent, A.2    Liebman, S.W.3
  • 19
    • 0020529962 scopus 로고
    • Transformation of intact yeast cells treated with alkali cations
    • Itoh,H., Fukada,Y., Murata,K. and Kimura,A. (1983) Transformation of intact yeast cells treated with alkali cations. J. Bacteriol., 153, 163-168.
    • (1983) J. Bacteriol. , vol.153 , pp. 163-168
    • Itoh, H.1    Fukada, Y.2    Murata, K.3    Kimura, A.4
  • 20
    • 0035838497 scopus 로고    scopus 로고
    • Yeast ribosomal protein deletion mutants possess altered peptidyltransferase activity and different sensitivity to cycloheximide
    • Dresios,J., Panopoulos,P., Frantziou,C.P. and Synetos,D. (2001) Yeast ribosomal protein deletion mutants possess altered peptidyltransferase activity and different sensitivity to cycloheximide. Biochemistry, 40, 8101-8108.
    • (2001) Biochemistry , vol.40 , pp. 8101-8108
    • Dresios, J.1    Panopoulos, P.2    Frantziou, C.P.3    Synetos, D.4
  • 21
    • 0016704921 scopus 로고
    • Purification and properties of rabbit reticulocyte protein synthesis elongation factor 2
    • Merrick,W.C., Kemper,W.M., Kantor,J.A. and Anderson,W.F. (1975) Purification and properties of rabbit reticulocyte protein synthesis elongation factor 2. J. Biol. Chem., 250, 2620-2625.
    • (1975) J. Biol. Chem. , vol.250 , pp. 2620-2625
    • Merrick, W.C.1    Kemper, W.M.2    Kantor, J.A.3    Anderson, W.F.4
  • 23
    • 0018790866 scopus 로고
    • Variation of phenotypic suppression due to the psi+ and psi- extrachromosomal determinants in yeast
    • Palmer,E., Wilhelm,J.M. and Sherman,F. (1979) Variation of phenotypic suppression due to the psi+ and psi- extrachromosomal determinants in yeast. J. Mol. Biol., 128, 107-110.
    • (1979) J. Mol. Biol. , vol.128 , pp. 107-110
    • Palmer, E.1    Wilhelm, J.M.2    Sherman, F.3
  • 24
    • 0026690643 scopus 로고
    • Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation
    • Wool,I.G., Gluck,A. and Endo,Y. (1992) Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation. Trends Biochem. Sci., 17, 266-269.
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 266-269
    • Wool, I.G.1    Gluck, A.2    Endo, Y.3
  • 26
    • 0001651532 scopus 로고
    • Through the accuracy window
    • Hill,W.E., Moore,P.B., Dahlberg,A., Schlessinger,D., Garrett,R.A. and Warner,J.R. (eds), American Society for Microbiology, Washington, DC
    • Kurland,C.G., Jörgensen,F., Richter,A., Ehrenberg,M., Bilgin,N. and Rojas,A.M. (1990) Through the accuracy window. In Hill,W.E., Moore,P.B., Dahlberg,A., Schlessinger,D., Garrett,R.A. and Warner,J.R. (eds), The Ribosome: Structure, Function and Evolution. American Society for Microbiology, Washington, DC, pp.513-526.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 513-526
    • Kurland, C.G.1    Jörgensen, F.2    Richter, A.3    Ehrenberg, M.4    Bilgin, N.5    Rojas, A.M.6
  • 27
    • 0020554836 scopus 로고
    • Testing an alternative model for the ribosomal peptide elongation cycle
    • Rheinberger,H.J. and Nierhaus,K.H. (1983) Testing an alternative model for the ribosomal peptide elongation cycle. Proc. Natl Acad. Sci. USA, 80, 4213-4217.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 4213-4217
    • Rheinberger, H.J.1    Nierhaus, K.H.2
  • 28
    • 0023100740 scopus 로고
    • Studies on the catalytic rate constant of ribosomal peptidyltransferase
    • Synetos,D. and Coutsogeorgopoulos,C. (1987) Studies on the catalytic rate constant of ribosomal peptidyltransferase. Biochim. Biophys. Acta, 923, 275-285.
    • (1987) Biochim. Biophys. Acta , vol.923 , pp. 275-285
    • Synetos, D.1    Coutsogeorgopoulos, C.2
  • 29
    • 0034685615 scopus 로고    scopus 로고
    • The phenotype of mutations of the base-pair C2658.G2663 that closes the tetraloop in the sarcintricin domain of Escherichia coli 23S ribosomal RNA
    • Chan,Y.L., Sitikov,A.S. and Wool,I.G. (2000) The phenotype of mutations of the base-pair C2658.G2663 that closes the tetraloop in the sarcintricin domain of Escherichia coli 23S ribosomal RNA. J. Mol. Biol., 298, 795-805.
    • (2000) J. Mol. Biol. , vol.298 , pp. 795-805
    • Chan, Y.L.1    Sitikov, A.S.2    Wool, I.G.3
  • 31
    • 0025265022 scopus 로고
    • Isolation and characterization of omnipotent suppressors in the yeast Saccharomyces cerevisiae
    • Wakem,L.P. and Sherman,F. (1990) Isolation and characterization of omnipotent suppressors in the yeast Saccharomyces cerevisiae. Genetics, 124, 512-522.
    • (1990) Genetics , vol.124 , pp. 512-522
    • Wakem, L.P.1    Sherman, F.2
  • 32
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16S ribosomal RNA
    • Moazed,D. and Noller,H.F. (1987) Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature, 327, 389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 33
    • 0038403669 scopus 로고    scopus 로고
    • Insights into the decoding mechanism from recent ribosome structures
    • Ogle,J.M., Carter,A.P. and Ramakrishnan,V. (2003) Insights into the decoding mechanism from recent ribosome structures. Trends Biochem. Sci., 28, 259-266.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 259-266
    • Ogle, J.M.1    Carter, A.P.2    Ramakrishnan, V.3
  • 34
    • 1642564526 scopus 로고    scopus 로고
    • Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: The universally conserved residues G693 and C795 regulate P-site RNA binding
    • Dinos,G., Wilson,D.N., Teraoka,Y., Szaflarski,W., Fucini,P., Kalpaxis,D. and Nierhaus,K.H. (2004) Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: the universally conserved residues G693 and C795 regulate P-site RNA binding. Mol. Cell, 13, 113-124.
    • (2004) Mol. Cell , vol.13 , pp. 113-124
    • Dinos, G.1    Wilson, D.N.2    Teraoka, Y.3    Szaflarski, W.4    Fucini, P.5    Kalpaxis, D.6    Nierhaus, K.H.7
  • 35
    • 0037474205 scopus 로고    scopus 로고
    • A dispensable yeast ribosomal protein optimizes peptidyltransferase activity and affects translocation
    • Dresios,J., Panopoulos,P., Suzuki,K. and Synetos,D. (2003) A dispensable yeast ribosomal protein optimizes peptidyltransferase activity and affects translocation. J. Biol. Chem., 278, 3314-3322.
    • (2003) J. Biol. Chem. , vol.278 , pp. 3314-3322
    • Dresios, J.1    Panopoulos, P.2    Suzuki, K.3    Synetos, D.4
  • 36
    • 0024280019 scopus 로고
    • Is translation inhibited by noncognate ternary complexes?
    • Bilgin,N., Ehrenberg,M. and Kurland,C. (1988) Is translation inhibited by noncognate ternary complexes? FEBS Lett., 233, 95-99.
    • (1988) FEBS Lett. , vol.233 , pp. 95-99
    • Bilgin, N.1    Ehrenberg, M.2    Kurland, C.3
  • 37
    • 0026783192 scopus 로고
    • Kinetic and thermodynamic parameters for tRNA binding to the ribosome and for the translocation reaction
    • Schilling-Bartetzko,S., Bartetzko,A. and Nierhaus,K.H. (1992) Kinetic and thermodynamic parameters for tRNA binding to the ribosome and for the translocation reaction. J. Biol. Chem., 267, 4703-4712.
    • (1992) J. Biol. Chem. , vol.267 , pp. 4703-4712
    • Schilling-Bartetzko, S.1    Bartetzko, A.2    Nierhaus, K.H.3
  • 39
    • 12644257881 scopus 로고    scopus 로고
    • Conserved nucleotides of 23S rRNA located at the ribosomal peptidyltransferase center
    • Spahn,C.M., Schäfer,M.A., Krayevsky,A.A. and Nierhaus,K.H. (1996) Conserved nucleotides of 23S rRNA located at the ribosomal peptidyltransferase center. J. Biol. Chem., 271, 32857-32862.
    • (1996) J. Biol. Chem. , vol.271 , pp. 32857-32862
    • Spahn, C.M.1    Schäfer, M.A.2    Krayevsky, A.A.3    Nierhaus, K.H.4
  • 40
    • 1442299243 scopus 로고    scopus 로고
    • The location and the significance of a cross-link between the sarcin/ricin domain of ribosomal RNA and the elongation factor-G
    • Chan,Y.L., Correll,C.C. and Wool,I.G. (2004) The location and the significance of a cross-link between the sarcin/ricin domain of ribosomal RNA and the elongation factor-G. J. Mol. Biol., 337, 263-272.
    • (2004) J. Mol. Biol. , vol.337 , pp. 263-272
    • Chan, Y.L.1    Correll, C.C.2    Wool, I.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.