-
1
-
-
0034783659
-
Targeting RNA with small molecule drugs: Therapeutic promises and chemical challenges
-
Gallego, J., and Varani, G. (2001) Targeting RNA with small molecule drugs: Therapeutic promises and chemical challenges, Acc. Chem. Res. 34, 836-843.
-
(2001)
Acc. Chem. Res
, vol.34
, pp. 836-843
-
-
Gallego, J.1
Varani, G.2
-
2
-
-
0035807863
-
Inhibition of HIV-1 Tat transactivation by steric block chimeric 2′-O-methyl/LNA oligoribo-nucleotides
-
Arzumanov, A., Walsh, A. P., Rajwanshi, V. K., Kumar, R., Wengel, J., and Gait, M. J. (2001) Inhibition of HIV-1 Tat transactivation by steric block chimeric 2′-O-methyl/LNA oligoribo-nucleotides, Biochemistry 40, 14645-14654.
-
(2001)
Biochemistry
, vol.40
, pp. 14645-14654
-
-
Arzumanov, A.1
Walsh, A.P.2
Rajwanshi, V.K.3
Kumar, R.4
Wengel, J.5
Gait, M.J.6
-
3
-
-
0034839488
-
Oligonucleotide analogue interference with the HIV-1 Tat protein TAR RNA interaction
-
Arzumanov, A., Walsh, A. P., Liu, X., Rajwanshi, V. K., Wengel, J., and Gait, M. J. (2001) Oligonucleotide analogue interference with the HIV-1 Tat protein TAR RNA interaction, Nucleosides, Nucleotides Nucleic Acids 20, 471-480.
-
(2001)
Nucleosides, Nucleotides Nucleic Acids
, vol.20
, pp. 471-480
-
-
Arzumanov, A.1
Walsh, A.P.2
Liu, X.3
Rajwanshi, V.K.4
Wengel, J.5
Gait, M.J.6
-
4
-
-
0036256430
-
Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells
-
Lee, N. S., Dohjima, T., Bauer, G., Li, H. T., Li, M. J., Ehsani, A., Salvaterra, P., and Rossi, J. (2002) Expression of small interfering RNAs targeted against HIV-1 rev transcripts in human cells, Nat. Biotechnol. 20, 500-505.
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 500-505
-
-
Lee, N.S.1
Dohjima, T.2
Bauer, G.3
Li, H.T.4
Li, M.J.5
Ehsani, A.6
Salvaterra, P.7
Rossi, J.8
-
5
-
-
0036891843
-
RNA interference directed against viral and cellular targets inhibits human immunodeficiency virus type 1 replication
-
Surabhi, R. M., and Gaynor, R. B. (2002) RNA interference directed against viral and cellular targets inhibits human immunodeficiency virus type 1 replication, J. Virol. 76, 12963-12973.
-
(2002)
J. Virol
, vol.76
, pp. 12963-12973
-
-
Surabhi, R.M.1
Gaynor, R.B.2
-
6
-
-
0019483431
-
Concerning the mode of action of micrococcin upon bacterial protein synthesis
-
Cundliffe, E., and Thompson, J. (1981) Concerning the mode of action of micrococcin upon bacterial protein synthesis, Eur. J. Biochem. 118, 47-52.
-
(1981)
Eur. J. Biochem
, vol.118
, pp. 47-52
-
-
Cundliffe, E.1
Thompson, J.2
-
7
-
-
0032554635
-
Binding of neomycin to TAR element of HIV-1 RNA induces dissociation of Tat protein by an allosteric mechanism
-
Wang, S., Huber, P. W., Cui, M., Czarnik, A. W., and Mei, H.-Y. (1998) Binding of neomycin to TAR element of HIV-1 RNA induces dissociation of Tat protein by an allosteric mechanism, Biochemistry 37, 5549-5557.
-
(1998)
Biochemistry
, vol.37
, pp. 5549-5557
-
-
Wang, S.1
Huber, P.W.2
Cui, M.3
Czarnik, A.W.4
Mei, H.-Y.5
-
8
-
-
0029975982
-
Human immunodeficiency virus type-1 Tat is an integral component of the activated transcription- elongation complex
-
Keen, N. J., Gait, M. J., and Karn, J. (1996) Human immunodeficiency virus type-1 Tat is an integral component of the activated transcription- elongation complex, Proc. Natl. Acad. Sci. U.S.A. 93, 2505-2510.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A
, vol.93
, pp. 2505-2510
-
-
Keen, N.J.1
Gait, M.J.2
Karn, J.3
-
9
-
-
0032701796
-
Tackling Tat
-
Karn, J. (1999) Tackling Tat, J. Mol. Biol. 293, 235-254.
-
(1999)
J. Mol. Biol
, vol.293
, pp. 235-254
-
-
Karn, J.1
-
10
-
-
0030976612
-
An inhibitor of the Tat/TAR RNA interaction that effectively suppresses HIV-1 replication
-
Hamy, F., Felder, E. R., Heizmann, G., Lazdins, J., Aboul-ela, F., Varani, G., Karn, J., and Klimkait, T. (1997) An inhibitor of the Tat/TAR RNA interaction that effectively suppresses HIV-1 replication, Proc. Natl. Acad. Sci. U.S.A. 94, 3548-3553.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A
, vol.94
, pp. 3548-3553
-
-
Hamy, F.1
Felder, E.R.2
Heizmann, G.3
Lazdins, J.4
Aboul-ela, F.5
Varani, G.6
Karn, J.7
Klimkait, T.8
-
11
-
-
0032515908
-
A new class of HIV-1 Tat antagonist acting through Tat-TAR inhibition
-
Hamy, F., Brondani, V., Flörsheimer, A., Stark, W., Blommers, M. J. J., and Klimkait, T. (1998) A new class of HIV-1 Tat antagonist acting through Tat-TAR inhibition, Biochemistry 37, 5086-5095.
-
(1998)
Biochemistry
, vol.37
, pp. 5086-5095
-
-
Hamy, F.1
Brondani, V.2
Flörsheimer, A.3
Stark, W.4
Blommers, M.J.J.5
Klimkait, T.6
-
12
-
-
0028823853
-
Inhibition of an HIV-1 Tat-derived peptide binding to TAR RNA by aminoglycoside antibiotics
-
Mei, H.-Y., Galan, A. A., Halim, N. S., Mack, D. P., Moreland, D. W., Sanders, K. B., Truong, H. N., and Czarnik, A. W. (1995) Inhibition of an HIV-1 Tat-derived peptide binding to TAR RNA by aminoglycoside antibiotics, Bioorg. Med. Chem. Lett. 22, 2755-2760.
-
(1995)
Bioorg. Med. Chem. Lett
, vol.22
, pp. 2755-2760
-
-
Mei, H.-Y.1
Galan, A.A.2
Halim, N.S.3
Mack, D.P.4
Moreland, D.W.5
Sanders, K.B.6
Truong, H.N.7
Czarnik, A.W.8
-
13
-
-
0034892960
-
Activation of human immunodeficiency virus transcription in T cells revisited: NF-κB p65 stimulates transcriptional elongation
-
West, M. J., Lowe, A. D., and Karn, J. (2001) Activation of human immunodeficiency virus transcription in T cells revisited: NF-κB p65 stimulates transcriptional elongation, J. Virol. 75, 8524-8537.
-
(2001)
J. Virol
, vol.75
, pp. 8524-8537
-
-
West, M.J.1
Lowe, A.D.2
Karn, J.3
-
14
-
-
30444431914
-
NF-κB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation
-
Williams, S. A., Chen, L. F., Kwon, H., Ruiz-Jarabo, C. M., Verdin, E., and Greene, W. C. (2006) NF-κB p50 promotes HIV latency through HDAC recruitment and repression of transcriptional initiation, EMBO J. 25, 139-149.
-
(2006)
EMBO J
, vol.25
, pp. 139-149
-
-
Williams, S.A.1
Chen, L.F.2
Kwon, H.3
Ruiz-Jarabo, C.M.4
Verdin, E.5
Greene, W.C.6
-
15
-
-
0142075333
-
Targeting the HIV trans-activation responsive region? Approaches towards RNA binding drugs
-
Krebs, A., Ludwig, V., Boden, O., and Gobel, M. W. (2003) Targeting the HIV trans-activation responsive region? Approaches towards RNA binding drugs, ChemBioChem 6, 972-978.
-
(2003)
ChemBioChem
, vol.6
, pp. 972-978
-
-
Krebs, A.1
Ludwig, V.2
Boden, O.3
Gobel, M.W.4
-
16
-
-
18244370299
-
Generation of an LFA-1 antagonist by the transfer of the ICAM-1 immunoregulatory epitope to a small molecule
-
Gadek, T. R., Burdick, D. J., McDowell, R. S., Stanley, M. S., Marsters, J. C., Jr., Paris, K. J., Oare, D. A., Reynolds, M. E., Ladner, C., Zioncheck, K. A., Lee, W. P., Gribling, P., Dennis, M. S., Skelton, N. J., Tumas, D. B., Clark, K. R., Keating, S. M., Beresini, M. H., Tilley, J. W., Presta, L. G., and Bodary, S. C. (2002) Generation of an LFA-1 antagonist by the transfer of the ICAM-1 immunoregulatory epitope to a small molecule, Science 295, 1086-1093.
-
(2002)
Science
, vol.295
, pp. 1086-1093
-
-
Gadek, T.R.1
Burdick, D.J.2
McDowell, R.S.3
Stanley, M.S.4
Marsters Jr., J.C.5
Paris, K.J.6
Oare, D.A.7
Reynolds, M.E.8
Ladner, C.9
Zioncheck, K.A.10
Lee, W.P.11
Gribling, P.12
Dennis, M.S.13
Skelton, N.J.14
Tumas, D.B.15
Clark, K.R.16
Keating, S.M.17
Beresini, M.H.18
Tilley, J.W.19
Presta, L.G.20
Bodary, S.C.21
more..
-
17
-
-
0038802739
-
Discovery of small molecule leads in a biotechnology datastream
-
Gadek, T. R., and McDowell, R. S. (2003) Discovery of small molecule leads in a biotechnology datastream, Drug Discovery-Today 8, 545-550.
-
(2003)
Drug Discovery-Today
, vol.8
, pp. 545-550
-
-
Gadek, T.R.1
McDowell, R.S.2
-
18
-
-
0035952281
-
Targeting RNA with peptidomimetic oligomers in human cells
-
Tamilarasu, N., Huq, I., and Rana, T. M. (2001) Targeting RNA with peptidomimetic oligomers in human cells, Bioorg. Med. Chem. Lett. 11, 505-507.
-
(2001)
Bioorg. Med. Chem. Lett
, vol.11
, pp. 505-507
-
-
Tamilarasu, N.1
Huq, I.2
Rana, T.M.3
-
19
-
-
3042776646
-
Structural mimicry of retroviral Tat proteins by constrained β-hairpin peptidomimetics: Ligands with high affinity and selectivity for viral RNA regulatory elements
-
Athanassiou, Z., Dias, R. L. A., Moehle, K., Dobson, N., Varani, G., and Robinson, J. A. (2004) Structural mimicry of retroviral Tat proteins by constrained β-hairpin peptidomimetics: Ligands with high affinity and selectivity for viral RNA regulatory elements, J. Am. Chem. Soc. 126, 6906-6913.
-
(2004)
J. Am. Chem. Soc
, vol.126
, pp. 6906-6913
-
-
Athanassiou, Z.1
Dias, R.L.A.2
Moehle, K.3
Dobson, N.4
Varani, G.5
Robinson, J.A.6
-
20
-
-
0028864394
-
The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein
-
Aboul-ela, F., Karn, J., and Varani, G. (1995) The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein, J. Mol. Biol. 253, 313-332.
-
(1995)
J. Mol. Biol
, vol.253
, pp. 313-332
-
-
Aboul-ela, F.1
Karn, J.2
Varani, G.3
-
21
-
-
0029852357
-
Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge
-
Aboul-ela, F., Karn, J., and Varani, G. (1996) Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge, Nucleic Acids Res. 24, 3974-3981.
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3974-3981
-
-
Aboul-ela, F.1
Karn, J.2
Varani, G.3
-
22
-
-
0027466447
-
Role of RNA structure in arginine recognition of TAR RNA
-
Puglisi, J. D., Chen, L., Frankel, A. D., and Williamson, J. R. (1993) Role of RNA structure in arginine recognition of TAR RNA, Proc. Natl. Acad. Sci. U.S.A. 90, 3680-3684.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A
, vol.90
, pp. 3680-3684
-
-
Puglisi, J.D.1
Chen, L.2
Frankel, A.D.3
Williamson, J.R.4
-
23
-
-
0028858599
-
Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex
-
Puglisi, J. D., Chen, L., Blanchard, S., and Frankel, A. D. (1995) Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex, Science 270, 1200-1203.
-
(1995)
Science
, vol.270
, pp. 1200-1203
-
-
Puglisi, J.D.1
Chen, L.2
Blanchard, S.3
Frankel, A.D.4
-
24
-
-
0029613238
-
Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA interaction
-
Ye, X., Kumar, R. A., and Patel, D. J. (1995) Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA interaction, Chem. Biol. 2, 827-840.
-
(1995)
Chem. Biol
, vol.2
, pp. 827-840
-
-
Ye, X.1
Kumar, R.A.2
Patel, D.J.3
-
25
-
-
24944500398
-
TAR RNA recognition by a cyclic peptidomimetic of Tat protein
-
Leeper, T. C., Athanassiou, Z., Dias, R. L. A., Robinson, J. A., and Varani, G. (2005) TAR RNA recognition by a cyclic peptidomimetic of Tat protein, Biochemistry 44, 12362-12372.
-
(2005)
Biochemistry
, vol.44
, pp. 12362-12372
-
-
Leeper, T.C.1
Athanassiou, Z.2
Dias, R.L.A.3
Robinson, J.A.4
Varani, G.5
-
26
-
-
0024448151
-
Calculation of protein extinction coefficients from amino acid sequence data
-
Gills, S. C., and von Hippel, P. H. (1989) Calculation of protein extinction coefficients from amino acid sequence data, Anal. Biochem. 182, 319-326.
-
(1989)
Anal. Biochem
, vol.182
, pp. 319-326
-
-
Gills, S.C.1
von Hippel, P.H.2
-
27
-
-
0003423124
-
-
IRL Press, Oxford, U.K
-
Atherton, E., and Sheppard, R. C. (1989) Solid Phase Peptide Synthesis: A practical Approach, IRL Press, Oxford, U.K.
-
(1989)
Solid Phase Peptide Synthesis: A practical Approach
-
-
Atherton, E.1
Sheppard, R.C.2
-
28
-
-
0023651444
-
Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
-
Milligan, J. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates, Nucleic Acids Res. 15, 8733-8798.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 8733-8798
-
-
Milligan, J.1
-
29
-
-
0343459675
-
The program XEASY for computer-supported NMR spectral analyis of biological macromolecules
-
Bartels, C., Xia, T.-h., Billeter, M., Güntert, P., and Wüthrich, K. (1995) The program XEASY for computer-supported NMR spectral analyis of biological macromolecules, J. Biomol. NMR 6, 1-10.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 1-10
-
-
Bartels, C.1
Xia, T.-H.2
Billeter, M.3
Güntert, P.4
Wüthrich, K.5
-
30
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Guntert, P., Mumenthale, C., and Wuthrich, K. (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA, J. Mol. Biol. 273, 283-298.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 283-298
-
-
Guntert, P.1
Mumenthale, C.2
Wuthrich, K.3
-
31
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., Billeter, M., and Wuthrich, K. (1996) MOLMOL: A program for display and analysis of macromolecular structures, J. Mol. Graphics 14, 51-55.
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
32
-
-
0033536659
-
Dissecting the stability of a β-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the β-turn and β-strand contributions to folding
-
Griffiths-Jones, S. R., Maynard, A. J., and Searle, M. S. (1999) Dissecting the stability of a β-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the β-turn and β-strand contributions to folding, J. Mol. Biol. 292, 1051-1069.
-
(1999)
J. Mol. Biol
, vol.292
, pp. 1051-1069
-
-
Griffiths-Jones, S.R.1
Maynard, A.J.2
Searle, M.S.3
-
33
-
-
0032507251
-
Origin of β-hairpin stability in solution: Structural and thermodynamic analysis of the folding of a model peptide supports hydrophobic stabilization in water
-
Maynard, A. J., Sharman, G. J., and Searle, M. S. (1998) Origin of β-hairpin stability in solution: Structural and thermodynamic analysis of the folding of a model peptide supports hydrophobic stabilization in water, J. Am. Chem. Soc. 120, 1996-2007.
-
(1998)
J. Am. Chem. Soc
, vol.120
, pp. 1996-2007
-
-
Maynard, A.J.1
Sharman, G.J.2
Searle, M.S.3
-
34
-
-
0026410969
-
Relationship between nuclear magnetic resonance chemical shift and protein secondary structure
-
Wishart, D. S., Sykes, B. D., and Richards, F. M. (1991) Relationship between nuclear magnetic resonance chemical shift and protein secondary structure, J. Mol. Biol. 222, 311-333.
-
(1991)
J. Mol. Biol
, vol.222
, pp. 311-333
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
35
-
-
0026597879
-
The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy
-
Wishart, D. S., Sykes, B. D., and Richards, F. M. (1992) The chemical shift index: A fast and simple method for the assignment of protein secondary structure through NMR spectroscopy, Biochemistry 31, 1647-1651.
-
(1992)
Biochemistry
, vol.31
, pp. 1647-1651
-
-
Wishart, D.S.1
Sykes, B.D.2
Richards, F.M.3
-
36
-
-
0141866666
-
Discovery of a small molecule Tat-TAR RNA antagonist that potently inhibits HIV-1 replication
-
Hwang, S., Tamilarasu, N., Kibler, K., Cao, H., Ali, A. m., Ping, Y., Jeang, K., and Rana, T. (2003) Discovery of a small molecule Tat-TAR RNA antagonist that potently inhibits HIV-1 replication, J. Biol. Chem. 40, 39092-39103.
-
(2003)
J. Biol. Chem
, vol.40
, pp. 39092-39103
-
-
Hwang, S.1
Tamilarasu, N.2
Kibler, K.3
Cao, H.4
Ali, A.M.5
Ping, Y.6
Jeang, K.7
Rana, T.8
-
37
-
-
0029008284
-
A peptide interaction in the major groove of RNA resembles protein interactions in the minor groove of DNA
-
Chen, L., and Frankel, A. D. (1995) A peptide interaction in the major groove of RNA resembles protein interactions in the minor groove of DNA, Proc. Natl. Acad. Sci. U.S.A. 92, 5077-5081.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A
, vol.92
, pp. 5077-5081
-
-
Chen, L.1
Frankel, A.D.2
-
38
-
-
4143070403
-
Design of β-sheet systems for understanding the thermodynamics and kinetics of protein folding
-
Searle, M. S., and Ciani, B. (2004) Design of β-sheet systems for understanding the thermodynamics and kinetics of protein folding, Curr. Opin. Struct. Biol 14, 458-464.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 458-464
-
-
Searle, M.S.1
Ciani, B.2
|