SCA: Symmetry-based center assignment of 2D projections of symmetric 3D objects

Journal of Structural Biology

Volumn 157, Issue 2, 2007, Pages 339-347

  Estrozi, Leandro Farias ^a   Trapani, Stefano ^a   Navaza, Jorge ^a  

^a CEA GRENOBLE   (France)

Author keywords

3D reconstruction; Center assignment; Cryo electron microscopy; EM methodology; Fourier Bessel transform; Symmetry adapted functions

Indexed keywords

ARTICLE; CRYOELECTRON MICROSCOPY; FOURIER ANALYSIS; IMAGE ANALYSIS; MATHEMATICAL MODEL; METHODOLOGY; NOISE; PRIORITY JOURNAL;

CRYOELECTRON MICROSCOPY; FOURIER ANALYSIS; GROEL PROTEIN; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; INFECTIOUS BURSAL DISEASE VIRUS; PATTERN RECOGNITION, AUTOMATED;

EID: 33846385659     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2006.08.004     Document Type: Article

References (19)

1. Adiga U., Baxter W., Hall R., Rockel B., Rath B., Frank J., and Glaeser R. Particle picking by segmentation: a comparative study with spider-based manual particle picking. J. Struct. Biol. 152 3 (2005) 211-220
2. Borissenko L., and Groll M. Crystal structure of tet protease reveals complementary protein degradation pathways in prokaryotes. J. Mol. Biol. 346 5 (2005) 1207-1219
3. Chevalier C., Galloux M., Pous J., Henry C., Denis J., Da Costa B., Navaza J., Lepault J., and Delmas B. Structural peptides of a nonenveloped virus are involved in assembly and membrane translocation. J. Virol. 79 19 (2005) 12253-12263
4. Conway J.F., and Steven A.C. Methods for reconstructing density maps of single particles from cryoelectron micrographs to subnanometer resolution. J. Struct. Biol. 128 1 (1999) 106-118
5. Coulibaly F., Chevalier C., Gutsche I., Pous J., Navaza J., Bressanelli S., Delmas B., and Rey F.A. The birnavirus crystal structure reveals structural relationships among icosahedral viruses. Cell 120 6 (2005) 761-772
6. Doerschuk P., and Johnson J. Ab initio reconstruction and experimental design for cryo electron microscopy. IEEE Trans. Inform. Theory 46 5 (2000) 1714-1729
7. Glaeser R.M., and Nicholson W.V. Review: automatic particle detection in electron microscopy. J. Struct. Biol. 133 (2001) 90-101
8. Huang Z., and Penczek P. Application of template matching technique to particle detection in electron micrographs. J. Struct. Biol. 145 1-2 (2004) 29-40
9. Kumar V., Heikkonen J., Engelhardt P., and Kaski K. Robust filtering and particle picking in micrograph images towards 3d reconstruction of purified proteins with cryo-electron microscopy. J. Struct. Biol. 145 1-2 (2004) 41-51
10. Landau L., and Lifschitz E. Mecanique Quantique (1967), Editions MIR, Moscow
11. Navaza J. On the three-dimensional reconstruction of icosahedral particles. J. Struct. Biol. 144 1-2 (2003) 13-23
12. Ogura T., and Sato C. Auto-accumulation method using simulated annealing enables fully automatic particle pickup completely free from a matching template or learning data. J. Struct. Biol. 146 3 (2004) 344-358
13. Provencher S., and Vogel R. Three-dimensional reconstruction from electron micrographs of disordered specimens. i-method. Ultramicroscopy 25 3 (1988) 209-221
14. Rath B., and Frank J. Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study. J. Struct. Biol. 145 1-2 (2004) 84-90
15. Roseman A. Particle finding in electron micrographs using a fast local correlation algorithm. Ultramicroscopy 94 3-4 (2003) 225-236
16. Saibil, H., 2006. What is biophysics?: Electron microscopy-British Biophysical Society. URL http://www.cryst.bbk.ac.uk/BBS/whatis/bbsem.html.
17. Sigworth F. Classical detection theory and the cryo-em particle selection problem. J. Struct. Biol. 145 1-2 (2004) 111-122
18. Volkmann N. An approach to automated particle picking from electron micrographs based on reduced representation templates. J. Struct. Biol. 145 1-2 (2004) 152-156
19. Wong H., Chen J., Mouche F., Rouiller I., and Bern M. Model-based particle picking for cryo-electron microscopy. J. Struct. Biol. 145 1-2 (2004) 157-167