메뉴 건너뛰기




Volumn 354, Issue 1, 2007, Pages 246-252

Quantification of low-expressed mRNA using 5′ LNA-containing real-time PCR primers

Author keywords

Hybridization; Interleukin 6 (IL6); LNA primer design; Locked nucleic acid (LNA); Low expressed mRNA; Polymerase chain reaction (PCR)

Indexed keywords

GENOMIC DNA; LOCKED NUCLEIC ACID; MESSENGER RNA; PRIMER DNA;

EID: 33846322849     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.12.194     Document Type: Article
Times cited : (13)

References (23)
  • 1
    • 24944534978 scopus 로고    scopus 로고
    • Real-time PCR for mRNA quantitation
    • Wong M.L., and Medrano J.F. Real-time PCR for mRNA quantitation. Biotechniques 39 (2005) 75-85
    • (2005) Biotechniques , vol.39 , pp. 75-85
    • Wong, M.L.1    Medrano, J.F.2
  • 2
    • 0032091098 scopus 로고    scopus 로고
    • Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification
    • 960, 962
    • Morrison T.B., Weis J.J., and Wittwer C.T. Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification. Biotechniques 24 (1998) 954-958 960, 962
    • (1998) Biotechniques , vol.24 , pp. 954-958
    • Morrison, T.B.1    Weis, J.J.2    Wittwer, C.T.3
  • 3
    • 0025230558 scopus 로고
    • DNA damage promotes jumping between templates during enzymatic amplification
    • Paabo S., Irwin D.M., and Wilson A.C. DNA damage promotes jumping between templates during enzymatic amplification. J. Biol. Chem. 265 (1990) 4718-4721
    • (1990) J. Biol. Chem. , vol.265 , pp. 4718-4721
    • Paabo, S.1    Irwin, D.M.2    Wilson, A.C.3
  • 5
    • 23744445909 scopus 로고    scopus 로고
    • Fibre type specificity of IL-6 gene transcription during muscle contraction in RAT: association with calcineurin activity
    • Banzet S., Koulmann N., Simler N., Birot O., Sanchez H., Chapot R., Peinnequin A., and Bigard X. Fibre type specificity of IL-6 gene transcription during muscle contraction in RAT: association with calcineurin activity. J. Physiol. 566 (2005) 839-847
    • (2005) J. Physiol. , vol.566 , pp. 839-847
    • Banzet, S.1    Koulmann, N.2    Simler, N.3    Birot, O.4    Sanchez, H.5    Chapot, R.6    Peinnequin, A.7    Bigard, X.8
  • 6
    • 0032473890 scopus 로고    scopus 로고
    • LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition
    • Koshkin A.A., Singh S.K., Nielsen P., Rajwanshi V.K., Kumar R., Meldgaard M., Olsen C.E., and Wengel J. LNA (locked nucleic acids): synthesis of the adenine, cytosine, guanine, 5-methylcytosine, thymine and uracil bicyclonucleoside monomers, oligomerisation, and unprecedented nucleic acid recognition. Tetrahedron 54 (1998) 3607-3630
    • (1998) Tetrahedron , vol.54 , pp. 3607-3630
    • Koshkin, A.A.1    Singh, S.K.2    Nielsen, P.3    Rajwanshi, V.K.4    Kumar, R.5    Meldgaard, M.6    Olsen, C.E.7    Wengel, J.8
  • 7
    • 0032560835 scopus 로고    scopus 로고
    • Stability and structural features of the duplexes containing nucleoside analogues with a fixed N-type conformation, 2′-O,4′-C-methylene ribonucleosides
    • Obika S., Nanbu D., Hari Y., Andoh J., Morio K., Doi T., and Imanishi T. Stability and structural features of the duplexes containing nucleoside analogues with a fixed N-type conformation, 2′-O,4′-C-methylene ribonucleosides. Tetrahedron Lett. 39 (1998) 5401-5404
    • (1998) Tetrahedron Lett. , vol.39 , pp. 5401-5404
    • Obika, S.1    Nanbu, D.2    Hari, Y.3    Andoh, J.4    Morio, K.5    Doi, T.6    Imanishi, T.7
  • 8
    • 0035113736 scopus 로고    scopus 로고
    • Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA
    • Braasch D.A., and Corey D.R. Locked nucleic acid (LNA): fine-tuning the recognition of DNA and RNA. Chem. Biol. 8 (2001) 1-7
    • (2001) Chem. Biol. , vol.8 , pp. 1-7
    • Braasch, D.A.1    Corey, D.R.2
  • 9
    • 0035868358 scopus 로고    scopus 로고
    • Stopped-flow kinetics of locked nucleic acid (LNA)-oligonucleotide duplex formation: studies of LNA-DNA and DNA-DNA interactions
    • Christensen U., Jacobsen N., Rajwanshi V.K., Wengel J., and Koch T. Stopped-flow kinetics of locked nucleic acid (LNA)-oligonucleotide duplex formation: studies of LNA-DNA and DNA-DNA interactions. Biochem. J. 354 (2001) 481-484
    • (2001) Biochem. J. , vol.354 , pp. 481-484
    • Christensen, U.1    Jacobsen, N.2    Rajwanshi, V.K.3    Wengel, J.4    Koch, T.5
  • 10
    • 17244381206 scopus 로고    scopus 로고
    • Locked nucleic acid inhibits amplification of contaminating DNA in real-time PCR
    • Hummelshoj L., Ryder L.P., Madsen H.O., and Poulsen L.K. Locked nucleic acid inhibits amplification of contaminating DNA in real-time PCR. Biotechniques 38 (2005) 605-610
    • (2005) Biotechniques , vol.38 , pp. 605-610
    • Hummelshoj, L.1    Ryder, L.P.2    Madsen, H.O.3    Poulsen, L.K.4
  • 11
    • 0037839761 scopus 로고    scopus 로고
    • Multiplex allele-specific PCR with optimized locked nucleic acid primers
    • 1154, 1158
    • Latorra D., Hopkins D., Campbell K., and Hurley J.M. Multiplex allele-specific PCR with optimized locked nucleic acid primers. Biotechniques 34 (2003) 1150-1152 1154, 1158
    • (2003) Biotechniques , vol.34 , pp. 1150-1152
    • Latorra, D.1    Hopkins, D.2    Campbell, K.3    Hurley, J.M.4
  • 13
    • 12344301971 scopus 로고    scopus 로고
    • Use of locked nucleic acid oligonucleotides as hybridization/FRET probes for quantification of 16S rDNA by real-time PCR
    • Goldenberg O., Landt O., Schumann R.R., Gobel U.B., and Hamann L. Use of locked nucleic acid oligonucleotides as hybridization/FRET probes for quantification of 16S rDNA by real-time PCR. Biotechniques 38 32 (2005) 29-30
    • (2005) Biotechniques , vol.38 , Issue.32 , pp. 29-30
    • Goldenberg, O.1    Landt, O.2    Schumann, R.R.3    Gobel, U.B.4    Hamann, L.5
  • 14
    • 0242352640 scopus 로고    scopus 로고
    • Design considerations and effects of LNA in PCR primers
    • Latorra D., Arar K., and Hurley J.M. Design considerations and effects of LNA in PCR primers. Mol. Cell. Probes 17 (2003) 253-259
    • (2003) Mol. Cell. Probes , vol.17 , pp. 253-259
    • Latorra, D.1    Arar, K.2    Hurley, J.M.3
  • 15
    • 33845599045 scopus 로고    scopus 로고
    • Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers
    • Levin J.D., Fiala D., Samala M.F., Kahn J.D., and Peterson R.J. Position-dependent effects of locked nucleic acid (LNA) on DNA sequencing and PCR primers. Nucleic Acids Res. 34 (2006) e142
    • (2006) Nucleic Acids Res. , vol.34
    • Levin, J.D.1    Fiala, D.2    Samala, M.F.3    Kahn, J.D.4    Peterson, R.J.5
  • 17
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia Jr. J. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad Sci. USA 95 (1998) 1460-1465
    • (1998) Proc. Natl. Acad Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 18
    • 0034771194 scopus 로고    scopus 로고
    • Oligonucleotide melting temperatures under PCR conditions: nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas
    • Von Ahsen N., Wittwer C.T., and Schutz E. Oligonucleotide melting temperatures under PCR conditions: nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas. Clin. Chem. 47 (2001) 1956-1961
    • (2001) Clin. Chem. , vol.47 , pp. 1956-1961
    • Von Ahsen, N.1    Wittwer, C.T.2    Schutz, E.3
  • 19
    • 2442496406 scopus 로고    scopus 로고
    • Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation
    • McTigue P.M., Peterson R.J., and Kahn J.D. Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation. Biochemistry 43 (2004) 5388-5405
    • (2004) Biochemistry , vol.43 , pp. 5388-5405
    • McTigue, P.M.1    Peterson, R.J.2    Kahn, J.D.3
  • 20
    • 21244434706 scopus 로고    scopus 로고
    • Mesenchymal stem cells rescue CD34(+) cells from radiation-induced apoptosis and sustain hematopoietic reconstitution after coculture and cografting in lethally irradiated baboons: is autologous stem cell therapy in nuclear accident settings hype or reality?
    • Drouet M., Mourcin F., Grenier N., Delaunay C., Mayol J.F., Lataillade J.J., Peinnequin A., and Herodin F. Mesenchymal stem cells rescue CD34(+) cells from radiation-induced apoptosis and sustain hematopoietic reconstitution after coculture and cografting in lethally irradiated baboons: is autologous stem cell therapy in nuclear accident settings hype or reality?. Bone Marrow Transplant. 35 (2005) 1201-1209
    • (2005) Bone Marrow Transplant. , vol.35 , pp. 1201-1209
    • Drouet, M.1    Mourcin, F.2    Grenier, N.3    Delaunay, C.4    Mayol, J.F.5    Lataillade, J.J.6    Peinnequin, A.7    Herodin, F.8
  • 22
    • 0025944267 scopus 로고
    • DNA probes: applications of the principles of nucleic acid hybridization
    • Wetmur J.G. DNA probes: applications of the principles of nucleic acid hybridization. Crit. Rev. Biochem. Mol. Biol. 26 (1991) 227-259
    • (1991) Crit. Rev. Biochem. Mol. Biol. , vol.26 , pp. 227-259
    • Wetmur, J.G.1
  • 23
    • 0024341521 scopus 로고
    • Hybrid DNA artifact from PCR of closely related target sequences
    • Shuldiner A.R., Nirula A., and Roth J. Hybrid DNA artifact from PCR of closely related target sequences. Nucleic Acids Res. 17 (1989) 4409
    • (1989) Nucleic Acids Res. , vol.17 , pp. 4409
    • Shuldiner, A.R.1    Nirula, A.2    Roth, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.