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Volumn 153, Issue 1, 2007, Pages 160-168

Rickettsiae phylogeny: A multigenic approach

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA AMINO 5 TERT BUTYL 3 HYDROXY 4 ISOXAZOLEPROPIONIC ACID; OUTER MEMBRANE PROTEIN A; PROTEIN DNAK; REPLICATION INITIATOR PROTEIN DNAA; VIRB PROTEIN;

EID: 33846305776     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2006/001149-0     Document Type: Article
Times cited : (55)

References (39)
  • 1
    • 23144435334 scopus 로고    scopus 로고
    • The multilocus sequence typing network: Mlst.net
    • (Web Server issue)
    • Aanensen, D. M. & Spratt, B. G. (2005). The multilocus sequence typing network: mlst.net. Nucleic Acids Res 33 (Web Server issue), W728-W733.
    • (2005) Nucleic Acids Res , vol.33
    • Aanensen, D.M.1    Spratt, B.G.2
  • 4
    • 3242695950 scopus 로고    scopus 로고
    • Data partitions and complex models in Bayesian analysis: The phylogeny of gymnophthalmid lizards
    • Castoe, T. A., Doan, T. M. & Parkinson, C. L. (2004). Data partitions and complex models in Bayesian analysis: the phylogeny of gymnophthalmid lizards. Syst Biol 53, 448-469.
    • (2004) Syst Biol , vol.53 , pp. 448-469
    • Castoe, T.A.1    Doan, T.M.2    Parkinson, C.L.3
  • 5
    • 3342926241 scopus 로고    scopus 로고
    • Multilocus sequence typing - What is resolved?
    • Cooper, J. E. & Feil, E. J. (2004). Multilocus sequence typing - what is resolved? Trends Microbiol 12, 373-377.
    • (2004) Trends Microbiol , vol.12 , pp. 373-377
    • Cooper, J.E.1    Feil, E.J.2
  • 6
    • 0029096506 scopus 로고
    • Sampling properties of DNA sequence data in phylogenetic analysis
    • Cummings, M. P., Otto, S. P. & Wakeley, J. (1995). Sampling properties of DNA sequence data in phylogenetic analysis. Mol Biol Evol 12, 814-822.
    • (1995) Mol Biol Evol , vol.12 , pp. 814-822
    • Cummings, M.P.1    Otto, S.P.2    Wakeley, J.3
  • 7
    • 0030816742 scopus 로고    scopus 로고
    • Can three incongruence tests predict when data should be combined?
    • Cunningham, C. W. (1997). Can three incongruence tests predict when data should be combined? Mol Biol Evol 14, 733-740.
    • (1997) Mol Biol Evol , vol.14 , pp. 733-740
    • Cunningham, C.W.1
  • 8
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (Version 3.2)
    • Felsenstein, J. (1989). PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5, 164-166.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 9
    • 0031827675 scopus 로고    scopus 로고
    • Phylogenetic analysis of the spotted fever Rickettsiae by study of the outer surface protein rOmpA
    • Fournier, P. E., Roux, V. & Raoult D. (1998). Phylogenetic analysis of the spotted fever Rickettsiae by study of the outer surface protein rOmpA. Int J Syst Bacteriol 48, 839-849.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 839-849
    • Fournier, P.E.1    Roux, V.2    Raoult, D.3
  • 10
    • 0347480119 scopus 로고    scopus 로고
    • Gene sequence-based criteria for identification of new Rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov
    • Fournier, P. E., Dumler, J. S., Greub, G., Zhang, J., Wu, Y. & Raoult, D. (2003). Gene sequence-based criteria for identification of new Rickettsia isolates and description of Rickettsia heilongjiangensis sp. nov. J Clin Microb 41, 5456-5465.
    • (2003) J Clin Microb , vol.41 , pp. 5456-5465
    • Fournier, P.E.1    Dumler, J.S.2    Greub, G.3    Zhang, J.4    Wu, Y.5    Raoult, D.6
  • 11
    • 84907133065 scopus 로고
    • Staining Rickettsiae in yolk-sac cultures
    • Gimenez, D. F. (1964). Staining Rickettsiae in yolk-sac cultures. Stain Technol 39, 135-140.
    • (1964) Stain Technol , vol.39 , pp. 135-140
    • Gimenez, D.F.1
  • 12
    • 0034351387 scopus 로고    scopus 로고
    • Likelihood-based tests of topologies in phylogenetics
    • Goldman, N., Anderson, J. P. & Rodrigo, A. G. (2000). Likelihood-based tests of topologies in phylogenetics. Syst Biol 49, 652-670.
    • (2000) Syst Biol , vol.49 , pp. 652-670
    • Goldman, N.1    Anderson, J.P.2    Rodrigo, A.G.3
  • 14
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa, M., Kishino, H. & Yano, T. (1985). Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22, 160-174.
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 15
    • 0034849408 scopus 로고    scopus 로고
    • MrBayes: Bayesian inference of phylogenetic trees
    • Huelsenbeck, J. P. & Ronquist F. R. (2091). MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755.
    • (2091) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.R.2
  • 16
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • Huelsenbeck, J. P., Ronquist F., Nielsen, R. & Bollback, J. P. (2001). Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294, 2310-2314.
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 17
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetic Analysis and sequence alignment
    • Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetic Analysis and sequence alignment. Brief Bioinform 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 18
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • Lanave, C., Preparate, G., Saccone, C. & Serlo, G. (1984). A new method for calculating evolutionary substitution rates. J Mol Evol 20, 86-93.
    • (1984) J Mol Evol , vol.20 , pp. 86-93
    • Lanave, C.1    Preparate, G.2    Saccone, C.3    Serlo, G.4
  • 19
    • 0022507362 scopus 로고
    • Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M. & Gojobori, T. (1986). Simple methods for estimating the number of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3, 418-426.
    • (1986) Mol Biol Evol , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 20
    • 33644768306 scopus 로고    scopus 로고
    • Scal, a previously undescribed paralog from autotransporter protein-encoding genes in Rickettsia species
    • Ngwamidiba, M., Blanc, G., Raoult, D. & Fournier, P.-E. (2006). Scal, a previously undescribed paralog from autotransporter protein-encoding genes in Rickettsia species. BMC Microbiol 20, 6-12.
    • (2006) BMC Microbiol , vol.20 , pp. 6-12
    • Ngwamidiba, M.1    Blanc, G.2    Raoult, D.3    Fournier, P.-E.4
  • 22
    • 23944507559 scopus 로고    scopus 로고
    • The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite
    • Ogata, H., Renesto, P., Audic, S., Robert C., Blanc, G., Fournier, P. E., Parinello, H., Claverie, J. M. & Raoult, D. (2005). The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite. PLoS Biol 3, e248.
    • (2005) PLoS Biol , vol.3
    • Ogata, H.1    Renesto, P.2    Audic, S.3    Robert, C.4    Blanc, G.5    Fournier, P.E.6    Parinello, H.7    Claverie, J.M.8    Raoult, D.9
  • 23
  • 24
    • 0020681263 scopus 로고
    • Rickettsia bellii sp. nov., a tick-borne rickettsia, widely distributed in the United States, that is distinct from the spotted fever and typhus biogroups
    • Philip, R. N., Casper, E. A., Anacker, R. L., Cory, J., Hayes, S. F., Burgdorfer, W. & Yunker, C. E. (1983). Rickettsia bellii sp. nov., a tick-borne rickettsia, widely distributed in the United States, that is distinct from the spotted fever and typhus biogroups. Int J Syst Bacteriol 33, 94-106.
    • (1983) Int J Syst Bacteriol , vol.33 , pp. 94-106
    • Philip, R.N.1    Casper, E.A.2    Anacker, R.L.3    Cory, J.4    Hayes, S.F.5    Burgdorfer, W.6    Yunker, C.E.7
  • 25
    • 20744436282 scopus 로고    scopus 로고
    • Tick-borne rickettsioses around the world: Emerging diseases challenging old concepts
    • Parola, P., Paddock, C. D. & Raoult, D. (2005). Tick-borne rickettsioses around the world: emerging diseases challenging old concepts. Clin Microbiol Rev 18, 719-756.
    • (2005) Clin Microbiol Rev , vol.18 , pp. 719-756
    • Parola, P.1    Paddock, C.D.2    Raoult, D.3
  • 26
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 27
    • 0030713440 scopus 로고    scopus 로고
    • Rickettsioses as paradigms of new or emerging infectious diseases
    • Raoult D. & Roux, V. (1997). Rickettsioses as paradigms of new or emerging infectious diseases. Clin Microbiol Rev 10, 694-719.
    • (1997) Clin Microbiol Rev , vol.10 , pp. 694-719
    • Raoult, D.1    Roux, V.2
  • 28
    • 0026022458 scopus 로고
    • Genotypic identification of Rickettsiae and estimation of interspecies sequence divergence for portions of two rickettsial genes
    • Regnery, R. L., Spruill, C. L & Plikaytis, B. D. (1991). Genotypic identification of Rickettsiae and estimation of interspecies sequence divergence for portions of two rickettsial genes. J Bacteriol 173, 1576-1589.
    • (1991) J Bacteriol , vol.173 , pp. 1576-1589
    • Regnery, R.L.1    Spruill, C.L.2    Plikaytis, B.D.3
  • 29
    • 0029027527 scopus 로고
    • Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing
    • Roux, V. & Raoult, D. (1995). Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing. Res Microbiol 146, 385-396.
    • (1995) Res Microbiol , vol.146 , pp. 385-396
    • Roux, V.1    Raoult, D.2
  • 30
    • 0033859965 scopus 로고    scopus 로고
    • Phylogenetic analysis of members of the genus Rickettsia using the gene encoding the outer-membrane protein rOmpB (ompB)
    • Roux, V. & Raoult, D. (2000). Phylogenetic analysis of members of the genus Rickettsia using the gene encoding the outer-membrane protein rOmpB (ompB). Int J Syst Evol Microbiol 50, 1449-1455.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 1449-1455
    • Roux, V.1    Raoult, D.2
  • 31
    • 0030894532 scopus 로고    scopus 로고
    • Citrate synthase gene comparison, a new tool for phylogenetic analysis and its application for the Rickettsiae
    • Roux, V., Rydkina, E., Eremeeva, M. & Raoult, D. (1997). Citrate synthase gene comparison, a new tool for phylogenetic analysis and its application for the Rickettsiae. Int J Syst Bacteriol 47, 252-262.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 252-262
    • Roux, V.1    Rydkina, E.2    Eremeeva, M.3    Raoult, D.4
  • 32
    • 0034921729 scopus 로고    scopus 로고
    • Phylogeny of Rickettsia spp. inferred by comparing sequences of 'gene D'. which encodes an intracytoplasmic protein
    • Sekeyova, Z., Roux, V. & Raoult, D. (2001). Phylogeny of Rickettsia spp. inferred by comparing sequences of 'gene D'. which encodes an intracytoplasmic protein. Int J Syst Evol Microbiol 51, 1353-1360.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 1353-1360
    • Sekeyova, Z.1    Roux, V.2    Raoult, D.3
  • 34
    • 0028097449 scopus 로고
    • Ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia and antiquity of the genus Rickettsia
    • Stothard, D. R., Clark J. B. & Fuerst, P. A. (1994). Ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia and antiquity of the genus Rickettsia. Int J Syst Bacteriol 44, 798-804.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 798-804
    • Stothard, D.R.1    Clark, J.B.2    Fuerst, P.A.3
  • 35
    • 0004248459 scopus 로고    scopus 로고
    • PAUP* - Phylogenetic Analysis Using Parsimony and other methods (software)
    • Sunderland, MA: Sinauer Associates
    • Swofford, D. L (2000). PAUP* - Phylogenetic Analysis Using Parsimony and other methods (software). Sunderland, MA: Sinauer Associates.
    • (2000)
    • Swofford, D.L.1
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTALX-Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tool
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1997). The CLUSTALX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tool. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0038051486 scopus 로고    scopus 로고
    • rRNA intergenic spacer regions for phylogenetic analysis of Rickettsia species
    • Vitorino, L., Zé-Zé, L., Sousa, A., Bacellar, F. & Tenreiro, R. (2003). rRNA intergenic spacer regions for phylogenetic analysis of Rickettsia species. Ann N Y Acad Sci 990, 726-733.
    • (2003) Ann N Y Acad Sci , vol.990 , pp. 726-733
    • Vitorino, L.1    Zé-Zé, L.2    Sousa, A.3    Bacellar, F.4    Tenreiro, R.5
  • 38
    • 0037622377 scopus 로고
    • Introduction to the Rickettsiales and other parasitic or mutualistic prokaryotes
    • In 2nd edn, Edited by A. Balows, H. G. Trüper, M. Dworking, W. Harder & K.-H. Schleifer. New York. Springer
    • Weiss, E. & Dasch, G. A. (1991). Introduction to the Rickettsiales and other parasitic or mutualistic prokaryotes. In The Prokaryotes, 2nd edn, pp. 2402-2406. Edited by A. Balows, H. G. Trüper, M. Dworking, W. Harder & K.-H. Schleifer. New York. Springer.
    • (1991) The Prokaryotes , pp. 2402-2406
    • Weiss, E.1    Dasch, G.A.2
  • 39
    • 17944366378 scopus 로고    scopus 로고
    • Proposal to create subspecies of Rickettsia conorii based on multi-locus sequence typing and an emended description of Rickettsia conorii
    • Zhu, Y., Fournier, P.-E., Eremeeve, M. & Raoult, D. (2005). Proposal to create subspecies of Rickettsia conorii based on multi-locus sequence typing and an emended description of Rickettsia conorii. BMC Microbiol 5, 11.
    • (2005) BMC Microbiol , vol.5 , pp. 11
    • Zhu, Y.1    Fournier, P.-E.2    Eremeeve, M.3    Raoult, D.4


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