Multiple testing methods for ChIP-Chip high density oligonucleotide array data

Journal of Computational Biology

Volumn 13, Issue 3, 2006, Pages 579-613

  Keleş, Sündüz ^a,d   Van Der Laan, Mark J ^b   Dudoit, Sandrine ^b   Cawley, Simon E ^c  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c Thermo Fisher Scientific   (United States)

^d University of Wisconsin Madison   (United States)

Author keywords

Binding site; ChIP Chip data; Chromatin immunoprecipitation; Cross validation; False discovery rate; Familywise error rate; Multiple testing; p53; Scan statistic; Tail probability of the proportion of false positives; Tiling array; Transcription factor

Indexed keywords

DNA BINDING PROTEIN; OLIGONUCLEOTIDE; PROTEIN P53; TRANSCRIPTION FACTOR;

5' UNTRANSLATED REGION; ARTICLE; BINDING SITE; CHIP CHIP HIGH DENSITY OLIGONUCLEOTIDE ARRAY; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME 21; CHROMOSOME 22; CODON; CONSENSUS SEQUENCE; CPG ISLAND; DNA HYBRIDIZATION; DNA MICROARRAY; FALSE DISCOVERY RATE; FALSE POSITIVE RESULT; GENE IDENTIFICATION; PRIORITY JOURNAL; SIMULATION; START CODON; STATISTICAL ANALYSIS; STOP CODON;

5' UNTRANSLATED REGIONS; BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 21; CHROMOSOMES, HUMAN, PAIR 22; CPG ISLANDS; GENE EXPRESSION PROFILING; GENOME, HUMAN; HUMANS; MODELS, GENETIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BINDING; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; TUMOR SUPPRESSOR PROTEIN P53;

EID: 33744473305     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2006.13.579     Document Type: Article

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