Biodegradation of methyl parathion and p-nitrophenol: Evidence for the presence of a p-nitrophenol 2-hydroxylase in a Gram-negative Serratia sp. strain DS001

Applied Microbiology and Biotechnology

Volumn 73, Issue 6, 2007, Pages 1452-1462

  Pakala, Suresh B ^a   Gorla, Purushotham ^a   Pinjari, Aleem Basha ^a   Krovidi, Ravi Kumar ^b   Baru, Rajasekhar ^b   Yanamandra, Mahesh ^b   Merrick, Mike ^c   Siddavattam, Dayananda ^a  

^a UNIVERSITY OF HYDERABAD   (India)

^b DR REDDY'S LABORATORIES LTD   (India)

^c JOHN INNES CENTRE   (United Kingdom)

Author keywords

Biodegradation; Catabolomics; p Nitrophenol hydroxylase component A; Parathion hydrolase; Serratia sp

Indexed keywords

BACTERIA; BIODEGRADATION; CELLS; ENZYME KINETICS; INORGANIC ACIDS; RNA;

ENERGY SOURCES; GRAM POSITIVE BACTERIA; HYDROQUINONE; METHYL PARATHION; SERRATIA;

INSECTICIDES;

4 NITROPHENOL; CARBON; HYDROQUINONE; OXYGENASE; PARATHION METHYL;

BACTERIUM; BIODEGRADATION; CATABOLISM; ENZYME; SOIL MICROORGANISM;

ARTICLE; BACTERIUM ISOLATION; BIODEGRADATION; ENZYME ASSAY; GAS CHROMATOGRAPHY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; OXYGEN CONSUMPTION; SERRATIA; TWO DIMENSIONAL GEL ELECTROPHORESIS;

BACTERIAL PROTEINS; BIODEGRADATION, ENVIRONMENTAL; CYTOCHROME P-450 CYP2E1; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; METHYL PARATHION; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NITROPHENOLS; OXYGEN; PHYLOGENY; SERRATIA; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; POSIBACTERIA; SERRATIA; SERRATIA SP.;

EID: 33846170936     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-006-0595-z     Document Type: Article

References (42)

1. Barnes H, Folkard AR (1951) The determination of nitrites. Analyst 76:599-603
2. Benning MM, Kuo JM, Raushel FM, Holden HM (1994) Three-dimensional structure of phosphotriesterase: an enzyme capable of detoxifying organophosphate nerve agents. Biochemistry 33:15001-15007
3. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254
4. Brown KA (1980) Phosphotriesterases of Flavobacterium sp. Soil Biol Biochem 12:105-112
5. Cassidy MB, Lee H, Trevors JT, Zablotowicz RB (1999) Chlorophenol and nitrophenol metabolism by Sphingomonas sp. UG 30. J Ind Microbiol Biotechnol 23:232-241
6. Chaudhry GR, Ali AN, Wheeler WB (1988) Isolation of a methyl parathion-degrading Pseudomonas sp. that possesses DNA homologous to the opd gene from a Flavobacterium sp. Appl Environ Microbiol 54:288-293
7. Chauhan A, Samanta SK, Jain RK (2000) Degradation of 4-nitrocatechol by Burkholderia cepacia: a plasmid-encoded novel pathway. J Appl Microbiol 88:764-772
8. Chen WX, Tan ZY, Gao JL, Li Y, Wang ET (1997) Rhizobium hainanense sp. nov., isolated from tropical legumes. Int J Syst Bacteriol 47:870-873
9. Cho CM, Mulchandani A, Chen W (2004) Altering the substrate specificity of organophosphorus hydrolase for enhanced hydrolysis of chlorpyrifos. Appl Environ Microbiol 70:4681-4685
10. Daubaras DL, Saido K, Chakrabarty AM (1996) Purification of Hydroxyquinol 1,2-dioxygenase and Maleylacetate reductase: the lower pathway of 2,4,5-trichlorophenoxyacetic acid metabolism by Burkholderia cepacia AC1100. Appl Environ Microbiol 62:4276-4279
11. Duffes F, Jenoe P, Boyaval P (2000) Use of two-dimensional electrophoresis to study differential protein expression in divercin V41-resistant and wild-type strains of Listeria monocytogenes. Appl Environ Microbiol 66:4318-4324
12. Errampalli D, Tresse O, Lee H, Trevors JT (1999) Bacterial survival and mineralization of p-nitrophenol in soil by green fluorescent protein-marked Moraxella sp. G21 encapsulated cells. FEMS Microbiol Ecol 30:229-236
13. Harper LL, Mcdaniel CS, Miller CE, Wild JR (1988) Dissimilar plasmids isolated from Pseudomonas diminuta MG and a Flavobacterium sp. (ATCC 27551) contain identical opd genes. Appl Environ Microbiol 54:2586-2589
14. Hayatsu M, Hirano M, Tokuda S (2000) Involvement of two plasmids in Fenitrothion degradation by Burkholderia sp. strain NF100. Appl Environ Microbiol 66:1737-1740
15. Jain RK, Dreisbach JH, Spain JC (1994) Biodegradation of zp-nitrophenol via 1,2,4-benzenetriol by an Arthrobacter sp. Appl Environ Microbiol 60:3030-3032
16. Kadiyala V, Spain JC (1998) A two-component monooxygenase catalyzes both the hydroxylation of p-nitrophenol and the oxidative release of nitrite from 4-nitrocatechol in Bacillus sphaericus JS905. Appl Environ Microbiol 64:2479-2484
17. Kitagawa W, Kimura N, Kamagata Y (2004) A novel p-nitrophenol degradation gene cluster from a gram-positive bacterium, Rhodococcus opacus SAO101. J Bacteriol 186:4894-4902
18. Leung KT, Tresse O, Errampalli D, Lee H, Trevors JT (1997) Mineralization of p-nitrophenol by pentachlorophenol-degrading Sphingomonas spp. FEMS Microbiol Lett 155:107-114
19. Leung KT, Campbell S, Gan Y, White DC, Lee H, Trevors JT (1999) The role of the Sphingomonas species UG 30 pentachlorophenol-4-monooxygenase in p-nitrophenol degradation. FEMS Microbiol Lett 173:247-253
20. Liu H, Zhang J, Wang S, Zhang X, Zhou N (2005) Plasmid-borne catabolism of methylparathion and p-nitrophenol in Pseudomonas sp. strain WBC-3. Biochem Biophys Res Commun 334:1107-1114
21. Loper JC (1968) Histidinol dehydrogenase from Salmonella typhimurium. Crystallization and composition studies. J Biol Chem 243:3264-3272
22. Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, New York
23. Mcdaniel CS, Harper LL, Wild JR (1988) Cloning and sequencing of a plasmid-borne gene (opd) encoding a phosphotriesterase. J Bacteriol 170:2306-2311
24. Mitra D, Vaidyanathan CS (1984) A new 4-nitrophenol 2-hydroxylase from a Nocardia sp. Biochem Int 8:609-615
25. Mulbry WW, Karns JS (1989) Purification of three parathion hydrolases from gram-negative bacterial strains. Appl Environ Microbiol 55:289-293
26. Mulbry WW, Karns JS, Kearney PC, Nelson JO, Mcdaniel CS, Wild JR (1986) Identification of a plasmid-borne parathion hydrolase gene from Flavobacterium sp. by southern hybridization with opd from Pseudomonas diminuta. Appl Environ Microbiol 51:926-930
27. Muller DM, Schlomann M, Reineke W (1996) Maleylacetate reductases in chloroaromatic-degrading bacteria using the modified ortho pathway: comparison of catalytic properties. J Bacteriol 178:298-300
28. Munnecke DM, Hsieh DP (1976) Pathways of microbial metabolism of parathion. Appl Environ Microbiol 31:63-69
29. Murray KC, Duggleby J, Sala-Trepat JM, Williams PA (1972) The metabolism of benzoate and methylbenzoates via the meta-cleavage pathway by Pseudomonas arvilla mt-2. Eur J Biochem 28:301-310
30. Prakash D, Chauhan A, Jain RK (1996) Plasmid-encoded degradation of p-nitrophenol by Pseudomonas cepacia. Biochem Biophys Res Commun 224:375-381
31. Ramanathan MP, Lalithakumari D (1999) Complete mineralization of methylparathion by Pseudomonas sp. A3. Appl Biochem Biotechnol 80:1-12
32. Rani NL, Lalithakumari D (1994) Degradation of methyl parathion by Pseudomonas putida. Can J Microbiol 40:1000-1006
33. Roldan MD, Blasco R, Caballero FJ, Castillo F (1998) Degradation of p-nitrophenol by the phototrophic bacterium Rhodobacter capsulatus. Arch Microbiol 169:36-42
34. Serdar CM, Murdock DC, Rohde MF (1989) Parathion hydrolase gene from Pseudomonas diminuta MG: subcloning, complete nucleotide sequence, and expression of the mature portion of the enzyme in Escherichia coli. Biotechnology 7:1151-1155
35. Siddaramappa R, Rajaram KP, Sethunathan N (1973) Degradation of parathion by bacteria isolated from flooded soil. Appl Microbiol 26:846-849
36. Singh BK, Walker A (2006) Microbial degradation of organophosphorus compounds. FEMS Microbiol Rev 30:428-471
37. Somara S, Siddavattam D (1995) Plasmid mediated organophosphate pesticide degradation by Flavobacterium balustinum. Biochem Mol Biol Int 36:627-631
38. Spain JC, Gibson DT (1991) Pathway for biodegradation of p-nitrophenol in a Moraxella sp. Appl Environ Microbiol 57:812-819
39. Takeo M, Yasukawa T, Abe Y, Nihara S, Marda Y, Negoro S (2003) Cloning and characterization of a 4-nitrophenol hydroxylase gene cluster from Rhodococcus sp. PN1. J Biosci Bioeng 95:139-145
40. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
41. Weigent DA, Nester EW (1976) Purification and properties of two aromatic aminotransferases in Bacillus subtilis. J Biol Chem 251:6974-6980
42. Zhang R, Cui Z, Jaindong J, Jain H, Xiangyang G, Sphunpeng L (2005) Diversity of organophosphorus pesticide degrading bacteria in a polluted soil and conservation of their organophosphorus hydrolase genes. Can J Microbiol 51:337-343