메뉴 건너뛰기




Volumn 22, Issue 3, 2006, Pages 360-363

Formation of a new solo-LTR of the human endogenous retrovirus H family in human chromosome 21

Author keywords

HERV H element; Recombination excision; Retrotransposition; Solo LTR

Indexed keywords

ARTICLE; BIOINFORMATICS; CHIMPANZEE; CHROMOSOME 21Q; CHROMOSOME 22; CHROMOSOME ANALYSIS; COMPARATIVE STUDY; CONTROLLED STUDY; ENDOGENOUS RETROVIRUS; GENETIC VARIABILITY; HOMOLOGOUS RECOMBINATION; HUMAN; HUMAN GENOME; INTERSPERSED REPEAT; LONG TERMINAL REPEAT; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; VIRUS DETECTION;

EID: 33846099629     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped Blast and PSI-BLAST: A new generation of protein database search program
    • Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, W., et al. (1997) Gapped Blast and PSI-BLAST: a new generation of protein database search program. Nucleic Acids Res. 25, 3389-3402.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, W.5
  • 2
    • 25144501550 scopus 로고    scopus 로고
    • Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): Implications for present-day activity
    • Belshaw, R., Dawson, A. L., Woolven-Allen, J., Redding, J., Burt, A., et al. (2005) Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activity. J. Virol. 79, 12507-12514.
    • (2005) J. Virol. , vol.79 , pp. 12507-12514
    • Belshaw, R.1    Dawson, A.L.2    Woolven-Allen, J.3    Redding, J.4    Burt, A.5
  • 3
    • 0032947317 scopus 로고    scopus 로고
    • The long terminal repeats of the HERV-H human endogenous retrovirus contain binding sites for transcriptional regulation by the Myb protein
    • de Parseval, N., Alkabbani, H., and Heidmann, T. (1999) The long terminal repeats of the HERV-H human endogenous retrovirus contain binding sites for transcriptional regulation by the Myb protein. J. Gen. Virol. 80, 841-845.
    • (1999) J. Gen. Virol. , vol.80 , pp. 841-845
    • de Parseval, N.1    Alkabbani, H.2    Heidmann, T.3
  • 4
    • 0025240887 scopus 로고
    • Functional heterogeneity of a large family of human LTR-like promoters and enhancers
    • Feuchter, A. and Mager, D. L. (1990) Functional heterogeneity of a large family of human LTR-like promoters and enhancers. Nucleic Acids Res. 18, 1261-1270.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1261-1270
    • Feuchter, A.1    Mager, D.L.2
  • 5
    • 33748328135 scopus 로고    scopus 로고
    • Molecular phylogeny of the subfamily Tephritinae (Diptera: Tephritidae) based on mitochondrial 16S rDNA sequences
    • Han, H. Y., Ro, K. E., and McPheron, B. A. (2006) Molecular phylogeny of the subfamily Tephritinae (Diptera: Tephritidae) based on mitochondrial 16S rDNA sequences. Mol. Cells 22, 78-88.
    • (2006) Mol. Cells , vol.22 , pp. 78-88
    • Han, H.Y.1    Ro, K.E.2    McPheron, B.A.3
  • 6
    • 0027270872 scopus 로고
    • Presence of env genes in members of the RTVL-H family of human endogenous retrovirus-like elements
    • Hirose, Y., Takamatsu, M., and Harada, F. (1993) Presence of env genes in members of the RTVL-H family of human endogenous retrovirus-like elements. Virology 192, 52-61.
    • (1993) Virology , vol.192 , pp. 52-61
    • Hirose, Y.1    Takamatsu, M.2    Harada, F.3
  • 7
    • 0038517006 scopus 로고    scopus 로고
    • Molecular phylogeny and evolution of the human endogenous retrovirus HERV-W LTR family in hominoid primates
    • Huh, J. W., Hong, K. W., Yi, J. M., Kim, T. H., Takenaka, O., et al. (2003) Molecular phylogeny and evolution of the human endogenous retrovirus HERV-W LTR family in hominoid primates. Mol. Cells 15, 122-126.
    • (2003) Mol. Cells , vol.15 , pp. 122-126
    • Huh, J.W.1    Hong, K.W.2    Yi, J.M.3    Kim, T.H.4    Takenaka, O.5
  • 8
    • 1242319532 scopus 로고    scopus 로고
    • Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: Implications for human and viral evolution
    • Hughes, J. F. and Coffin, J. M. (2004) Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: implications for human and viral evolution. Proc. Natl. Acad. Sci. USA 101, 1668-1672.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 1668-1672
    • Hughes, J.F.1    Coffin, J.M.2
  • 9
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 10
    • 0034284437 scopus 로고    scopus 로고
    • Repbase update: A database and an electronic journal of repetitive elements
    • Jurka, J. (2000) Repbase update: a database and an electronic journal of repetitive elements. Trends Genet. 16, 418-420.
    • (2000) Trends Genet. , vol.16 , pp. 418-420
    • Jurka, J.1
  • 11
    • 0141561907 scopus 로고    scopus 로고
    • Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
    • van de Lagemaat, L. N., Landry, J. R., Mager, D. L., and Medstrand, P. (2003) Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions, Trends Genet. 19, 530-536.
    • (2003) Trends Genet. , vol.19 , pp. 530-536
    • van de Lagemaat, L.N.1    Landry, J.R.2    Mager, D.L.3    Medstrand, P.4
  • 12
    • 3543069877 scopus 로고    scopus 로고
    • Human endogenous retrovirus family HERV-K(HML-5): Status, evolution, and reconstruction of an ancient betaretrovirus in the human genome
    • Lavie, L., Medstrand, P., Schempp, W., Meese, E., and Mayer, J. (2004) Human endogenous retrovirus family HERV-K(HML-5): status, evolution, and reconstruction of an ancient betaretrovirus in the human genome. J. Virol. 78, 8788-8798.
    • (2004) J. Virol. , vol.78 , pp. 8788-8798
    • Lavie, L.1    Medstrand, P.2    Schempp, W.3    Meese, E.4    Mayer, J.5
  • 13
    • 0029938821 scopus 로고    scopus 로고
    • The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences
    • Lower, R., Lower, J., and Kurth, R. (1996) The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences. Proc. Natl. Acad. Sci. USA 93, 5177-5184.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5177-5184
    • Lower, R.1    Lower, J.2    Kurth, R.3
  • 14
    • 0028820282 scopus 로고
    • HERV-H endogenous retroviruses: Presence in the New World branch but amplification in the Old World primate lineage
    • Mager, D. L. and Freeman, J. D. (1995) HERV-H endogenous retroviruses: presence in the New World branch but amplification in the Old World primate lineage. Pirology 213, 395-404.
    • (1995) Pirology , vol.213 , pp. 395-404
    • Mager, D.L.1    Freeman, J.D.2
  • 15
    • 0033180333 scopus 로고    scopus 로고
    • Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3)
    • Mager, D. L., Hunter, D. G., Schertzer, M., and Freeman, J. D. (1999) Endogenous retroviruses provide the primary polyadenylation signal for two new human genes (HHLA2 and HHLA3). Genomics 59, 255-263.
    • (1999) Genomics , vol.59 , pp. 255-263
    • Mager, D.L.1    Hunter, D.G.2    Schertzer, M.3    Freeman, J.D.4
  • 16
    • 2942657397 scopus 로고    scopus 로고
    • Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome
    • Mamedov, I. Z., Lebedev, Y. B., and Sverdlov, E. D. (2004) Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome. J. Gen. Virol. 85, 1485-1488.
    • (2004) J. Gen. Virol. , vol.85 , pp. 1485-1488
    • Mamedov, I.Z.1    Lebedev, Y.B.2    Sverdlov, E.D.3
  • 17
    • 0031797726 scopus 로고    scopus 로고
    • Human-specific integrations of the HERV-K endogenous retrovirus family
    • Medstrand, P. and Mager, D. L. (1998) Human-specific integrations of the HERV-K endogenous retrovirus family. J. Virol. 72, 9782-9787.
    • (1998) J. Virol. , vol.72 , pp. 9782-9787
    • Medstrand, P.1    Mager, D.L.2
  • 18
    • 0342545919 scopus 로고    scopus 로고
    • Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
    • Mi, S., Lee, X., Li, X., Veldman, G. M., Finnerty, H., et al. (2000) Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature 403, 785-789.
    • (2000) Nature , vol.403 , pp. 785-789
    • Mi, S.1    Lee, X.2    Li, X.3    Veldman, G.M.4    Finnerty, H.5
  • 19
    • 0029999370 scopus 로고    scopus 로고
    • Gain of Sp1 sites and loss of repressor sequences associated with a young, transcriptionally active subset of HERV-H endogenous long terminal repeats
    • Nelson, D. T., Goodchild, N. L., and Mager, D. L. (1996) Gain of Sp1 sites and loss of repressor sequences associated with a young, transcriptionally active subset of HERV-H endogenous long terminal repeats. Virology 220, 213-218.
    • (1996) Virology , vol.220 , pp. 213-218
    • Nelson, D.T.1    Goodchild, N.L.2    Mager, D.L.3
  • 20
    • 27144482418 scopus 로고    scopus 로고
    • Genetic variation of KAP13.3 and 13.4 genes in primates
    • Park, E. S., Huh, J. W., and Kim, H. S. (2005) Genetic variation of KAP13.3 and 13.4 genes in primates. Korean J. Genet. 27, 253-259.
    • (2005) Korean J. Genet. , vol.27 , pp. 253-259
    • Park, E.S.1    Huh, J.W.2    Kim, H.S.3
  • 21
    • 0031975368 scopus 로고    scopus 로고
    • Reconstructing hominoid Y evolution: X-homologous block, created by X-Y transposition, was distrupted by Yp inversion through LINE-LINE recombination
    • Schwartz, A., Chan, D. C., Brown, L. G., Alagappan, R., Pettay, D., et al. (1998) Reconstructing hominoid Y evolution: X-homologous block, created by X-Y transposition, was distrupted by Yp inversion through LINE-LINE recombination. Hum. Mol. Genet. 7, 1-11.
    • (1998) Hum. Mol. Genet. , vol.7 , pp. 1-11
    • Schwartz, A.1    Chan, D.C.2    Brown, L.G.3    Alagappan, R.4    Pettay, D.5
  • 22
    • 0035915999 scopus 로고    scopus 로고
    • Cell type-specific expression and promoter activity of human endogenous retroviral long terminal repeats
    • Schon, U., Seifarth, W., Baust, C., Hohenadl, C., Erfle, V., et al. (2001) Cell type-specific expression and promoter activity of human endogenous retroviral long terminal repeats. Virology 279, 280-291.
    • (2001) Virology , vol.279 , pp. 280-291
    • Schon, U.1    Seifarth, W.2    Baust, C.3    Hohenadl, C.4    Erfle, V.5
  • 23
    • 0033964662 scopus 로고    scopus 로고
    • Retroviruses and primate evolution
    • Sverdlov, E. D. (2000) Retroviruses and primate evolution. Bioessays 22, 161-171.
    • (2000) Bioessays , vol.22 , pp. 161-171
    • Sverdlov, E.D.1
  • 24
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 25
    • 0034108733 scopus 로고    scopus 로고
    • Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database
    • Tristem, M. (2000) Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database. J. Virol. 74, 3715-3730.
    • (2000) J. Virol. , vol.74 , pp. 3715-3730
    • Tristem, M.1
  • 26
    • 0035797901 scopus 로고    scopus 로고
    • Insertional polymorphisms of full-length endogenous retroviruses in humans
    • Turner, G., Barbulescu, M., Su, M., Jensen-Seaman, M. I., Kidd, K. K., et al. (2001) Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr. Biol. 11, 1531-1535.
    • (2001) Curr. Biol. , vol.11 , pp. 1531-1535
    • Turner, G.1    Barbulescu, M.2    Su, M.3    Jensen-Seaman, M.I.4    Kidd, K.K.5
  • 27
    • 2642575083 scopus 로고    scopus 로고
    • DNA sequence and comparative analysis of chimpanzee chromosome 22
    • Watanabe, H., Fujiyama, A., Hattori, M., Taylor, T. D., Toyoda, A., et al. (2004) DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature 429, 382-328.
    • (2004) Nature , vol.429 , pp. 328-382
    • Watanabe, H.1    Fujiyama, A.2    Hattori, M.3    Taylor, T.D.4    Toyoda, A.5
  • 28
    • 7544230404 scopus 로고    scopus 로고
    • Human endogenous retroviral elements belonging to the HERV-S family from human tissues, cancer cells, and primates: Expression, structure, phylogeny and evolution
    • Yi, J. M., Kim, T. H., Huh, J. W., Park, K. S., Jang, S. B., et al. (2004) Human endogenous retroviral elements belonging to the HERV-S family from human tissues, cancer cells, and primates: expression, structure, phylogeny and evolution. Gene 342, 283-292.
    • (2004) Gene , vol.342 , pp. 283-292
    • Yi, J.M.1    Kim, T.H.2    Huh, J.W.3    Park, K.S.4    Jang, S.B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.