Molecular phylogeny of the subfamily tephritinae (Diptera: Tephritidae) based on mitochondrial 16S rDNA sequences

Molecules and Cells

Volumn 22, Issue 1, 2006, Pages 78-88

  Han, Ho Yeon ^a   Ro, Kyung Eui ^a   McPheron, Bruce A ^b  

^a Yonsei University Wonju   (South Korea)

^b PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

16S rRNA; Classification; Diptera; Phylogeny; Tephritidae; Tephritinae

Indexed keywords

DNA 16S; MITOCHONDRIAL DNA;

ARTICLE; DNA EXTRACTION; DNA SEQUENCE; GENE AMPLIFICATION; MOLECULAR PHYLOGENY; MONOPHYLY; NONHUMAN; NUCLEOTIDE SEQUENCE; RNA GENE; STATISTICAL ANALYSIS; TAXONOMY; TEPHRITIDAE;

ANIMALS; BASE SEQUENCE; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; TEPHRITIDAE;

CECIDOCHARINI; DIPTERA; DITHRYCINI; EUTRETINI; MYOPITINI; NEASPILOTA; NOEETINI; TEPHRITIDAE; TEPHRITINAE; TEPHRITINI; TERELLIINI;

EID: 33748328135     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1747-0285.2005.00324.x     Document Type: Article

References (46)

1. Bush, G. L. (1966) Female heterogamety in the family Tephritidae (Acalyptratae, Diptera). Am. Nat. 100, 119-126.
2. Castresana, J. (2002) GBLOCKS: selection of conserved blocks from multiple alignments for their use in phylogenetic analysis, Version 0.91b. Copyrighted by J. Castresana, EMBL.
3. Cogan, B. H. and Munro, H. K. (1980) Family Tephritidae, in Catalogue of the Diptera of the Afrotropical Region, Crosskey, R. W., Cogan, B. H., Freeman, P., Pont, A. C., Smith, K. G. V., and Oldroyd, H. (eds.), pp. 518-554, British Museum (Natural History), London.
4. Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Foote, R. H., Blanc, F. L., and Norrbom, A. L. (1993) Handbook of the Fruit Flies (Diptera: Tephritidae) of America North of Mexico, Comstock Publishing Associates, Ithaca.
6. Freidberg, A. (2002) Systematics of Schistopterini (Diptera: Tephritidae: Tephritidae), with descriptions of new genera and species. Syst. Entomol. 27, 1-29.
7. Freidberg, A. and Kugler, J. (1989) Fauna Palaestina. Insecta IV. Diptera: Tephritidae. Israel Academy of Sciences and Humanities, Jerusalem.
8. Freidberg, A. and Mathis, W. N. (1986) Studies of Terelliinae (Diptera: Tephritidae): a revision of the genus Neaspilota Osten Sacken. Smithson. Contrib. Zool. 439, 1-75.
9. Freidberg, A. and Norrbom, A. L. (1999) A generic reclassification and phylogeny of the tribe Myopitini; in Fruit Flies (Tephritidde): Phylogeny and Evolution of Behavior, Aluja, M. and Norrbom, A. L. (eds.), pp. 581-627, CRC Press.
10. Frias, L. D. (1992) Aspectos de la biologia evolutiva de especies de Tephritidae (Diptera) de distribucion chilena. (Some aspects of the evolutive biology of Chilean species of Tephritidae (Diptera)). Acta Entomol. Chilena 17, 69-79.
11. Gu, X., Fu, Y.-X., and Li, W.-H. (1995) Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites. Mol. Biol. Evol. 12, 546-557.
12. Hall, T. A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41, 95-98.
13. Han, H.-Y. (2000) Molecular phylogenetic study of the tribe Trypetini (Diptera: Tephritidae), using mitochondrial 16S ribosomal DNA sequences. Biochem. Syst. Ecol. 28, 501-513.
14. Han, H.-Y. and McPheron, B. A. (1997) Molecular phylogenetic study of Tephritidae (Insecta: Diptera) using partial sequences of the mitochondrial 16S ribosomal DNA. Mol. Phylogent. Evol. 7, 17-32.
15. Han, H.-Y. and McPheron, B. A. (1999) Nucleotide sequence data as a tool to test phylogenetic relationships among higher groups of Tephritidae: a case study using mitochondrial ribosomal DNA; in Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, Aluja, M. and Norrbom, A. L. (eds.), pp. 115-132, CRC Press.
16. Han, H.-Y. and Ro, K.-E. (2002) Molecular systematics of Tephritidae (Insecta: Diptera): testing phylogenetic position of Korean Acidiella spp. (Trypetini) using mitochondrial 16S rDNA sequences. Korean J. Biol. Sci. 6, 13-18.
17. Han, H.-Y. and Ro, K.-E. (2005) Molecular phylogeny of the superfamily Tephritoidea (Insecta: Diptera): new evidence from the mitochondrial 12S, 16S, and COII genes. Mol. Phylogent. Evol. 39, 416-430.
18. Han, H.-Y., Ro, K.-E., Choi, D.-S., and Kim, S.-K. (2002) Molecular systematics of the Tephritoidea (Insecta: Diptera): phylogenetic signal in 16S and 28S rDNAs for inferring relationships among families. Korean J. Biol. Sci. 6, 145-151.
19. Hancock, D. L. (2001) Systematic notes on the genera of Australian and some non-Australian Tephritinae (Diptera: Tephritidae). Aust. Entomol. 28, 111-116.
20. Hancock, D. L. (2004) A review of the fruit fly tribe Pliomelaenini (Diptera: Tephritidae: Tephritinae) in the Indo-Australian Region. Aust. Entomol. 31, 133-136.
21. Hardy, D. E. (1977) Family Tephritidae (Trypetidae,Trupaneidae); in A Catalog of the Diptera of the Oriental Region, Volume III, Suborder Cyclorrhapha, (excluding Division Aschiza), Delfinado, M. D. and Hardy, D. E. (eds.), pp. 44-134, University of Hawaii Press, Honolulu.
22. Hendel, F. G. (1927) Trypetidae; in Die Fliegen der palaearktischen Region, Lidner, E. (ed.), 5(16-19), pp. 1-221, E. Schweizerbart, Verlag (Erwin Nagele), Stuttgart.
23. Hering, E. M. (1947) Neue Gattungen und Arten der Fruchtfliegen. Siruna Seva 6, 1-16.
24. Huelsenbeck, J. P. and Rannala, B. (2004) Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Syst. Biol. 53, 904-913.
25. Huelsenbeck, J. P. and Ronquist, F. R. (2001) MrBayes: Bayesian inference of phylogeny. Bioinformatics 17, 754.
26. Huelsenbeck, J. P., Larget, B., Miller, R. E., and Ronquist, F. R. (2002) Potential applications and pitfalls of Bayesian inference of phylogeny. Syst. Biol. 51, 673-688.
27. Kimura, M. (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
28. Kitto, G. B. (1983) An immunological approach to the phylogeny of the Tephritidae; in Fruit Flies of Economic Importance, Proceedings of the CEC/IOBC International Symposium, Athens, Greece, 1982, Cavalloro, R. (ed.), pp. 203-211, A. A. Balkema, Rotterdam.
29. Korneyev, V. A. (1995) New records and synonymy in Xyphosiini and Tephritini (Diptera: Tephritidae: Tephritinae) from the Far East Russia. Rus. Entomol. J. 4, 3-10.
30. Korneyev, V A. (1996) Reclassification of Palearctic, Tephritidae (Diptera). Communication 3. Vestn. Zool. 1995 (5-6), 25-48.
31. Korneyev, V. A. (1999) Phylogenetic relationships among the families of the superfamily Tephritoidea; in Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, Aluja, M. and Norrbom, A. L. (eds.), pp. 3-22, CRC Press.
32. Kumar, S., Tamura, K., and Nei, M. (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5, 150-163.
33. Lanave, C. G., Preparata, C., Saccone, C., and Serio, G. (1984) A new method for calculating evolutionary substitution rates, J. Mol. Evol. 20, 86-93.
34. Merz, B. M. (1999) Phylogeny of the Palearctic and Afrotropical genera of the Tephritis group (Tephritinae: Tephritini); in Fruit Flies (Tephritidae): Phylogeny and Evolution of Behavior, Aluja, M. and Norrbom, A. L. (eds.), pp. 629-669, CRC Press.
35. Munro, H. K. (1957) Sphenella and some allied genera (Trypetidae, Diptera). J. Entomol. Soc. South. Af 20, 14-57.
36. Nei, M. (1991) Relative efficiencies of different tree-making methods for molecular data; in Phylogenetic Analysis of DNA Sequences, Miyamoto, M. M. and Cracraft, J. (eds.), pp. 90-129, Oxford Univ. Press, New York.
37. Nei, M. (1996) Phylogenetic analysis in molecular evolutionary genetics. Annu. Rev. Genet. 30, 371-403.
38. Norrbom, A. L., Carroll, L. E., Thompson, F. C., White, I. M., and Freidberg, A. (1999) Systematic database of name; in Fruit Fly Expert System and Systematic Information Database, Thompson, F. C. (ed.), pp. 65-251, Diptera Data Dissemination Disk 1 & Myia.
39. Park, Y. C., Kitade, O., Schwarz, M., Kim, J. P., and Kim, W. (2006) Intraspecific molecular phylogeny, genetic variation and phylogeography of Reticulitermes speratus (Isoptera: Rhinotermitidae). Mol. Cells 21, 89-103.
40. Posada, D. and Crandall, K. A. (1998) Modeltest: Testing the model of DNA substitution. Bioinformatics 14, 817-818.
41. Radhakrishnan, C. (1984) A new Tephrella (Diptera: Tephritidae) from Meghalaya, India. Bull. Zool. Surv. India 6, 27-29.
42. Rzhetsky, A. and Nei, M. (1992) A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9, 945-967.
43. Sheppard, W. S., Steck, G. J., and McPheron, B. A. (1992) Geographic populations of the medfly may be differentiated by mitochondrial DNA variation. Experientia 49, 1010-1013.
44. Swofford, D. L. (2002) PAUP*, Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
45. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1997) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acid Res. 22, 4673-4680.
46. Xiong, B. and Kocher, T. D. (1991) Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae). Genome 34, 306-311.