Sulfur mobilization in cyanobacteria: The catalytic mechanism of L-cystine C-S lyase (C-DES) from Synechocystis

Journal of Biological Chemistry

Volumn 281, Issue 50, 2006, Pages 38769-38780

  Campanini, Barbara ^a   Schiaretti, Francesca ^a   Abbruzzetti, Stefania ^a   Kessler, Dorothea ^b   Mozzarelli, Andrea ^a,c  

^a UNIVERSITY OF PARMA   (Italy)

^b UNIVERSITY OF HEIDELBERG   (Germany)

^c Dept of Biochemistry and Molecular Biology ^*  (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CYANOBACTERIA; CYANOBACTERIUM SYNECHOCYSTIS; CYSTEINE DESULFURASES; SULFUR MOBILIZATION;

AMINES; AMMONIA; GENES; PROTEINS;

BACTERIA;

AMMONIA; BACTERIAL ENZYME; CYSTEINE DERIVATIVE; CYSTEINE LYASE; CYSTINE; DEHYDROALANINE; LYASE; PYRUVIC ACID; SCHIFF BASE; SULFUR; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CONTROLLED STUDY; CYANOBACTERIUM; ENZYME ANALYSIS; ENZYME KINETICS; ENZYME SUBSTRATE; ISOMERISM; MOBILIZATION; NONHUMAN; PRIORITY JOURNAL; STEADY STATE; SYNECHOCYSTIS;

AMINO ACID SEQUENCE; CARBON-SULFUR LYASES; CATALYSIS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROPHOTOMETRY, ULTRAVIOLET; SULFUR; SYNECHOCYSTIS;

CYANOBACTERIA; SYNECHOCYSTIS; SYNECHOCYSTIS SP.; SYNECHOCYSTIS SP. PCC 6714;

EID: 33846020960     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M607098200     Document Type: Article

References (85)

1. Mihara, H., and Esaki, N. (2002) Appl. Microbiol. Biotechnol. 60, 12-23
2. Kessler, D. (2006) FEMS Microbiol. Rev. 30, 825-840
3. Beinert, H. (2000) Eur. J. Biochem. 267, 5657-5664
4. Mueller, E. G. (2006) Nat. Chem. Biol. 2, 185-194
5. Toohey, J. I. (1989) Biochem. J. 264, 625-632
6. Palenchar, P. M., Buck, C. J., Cheng, H., Larson, T. J., and Mueller, E. G. (2000) J. Biol. Chem. 275, 8283-8286
7. Cavallini, D., Federici, G., and Barboni, E. (1970) Eur. J. Biochem. 14, 169-174
8. Clausen, T., Kaiser, J. T., Steegborn, C., Huber, R., and Kessler, D. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 3856-3861
9. Zheng, L., and Dean, D. R. (1994) J. Biol. Chem. 269, 18723-18726
10. Grishin, N. V., Phillips, M. A., and Goldsmith, E. J. (1995) Protein Sci. 4, 1291-1304
11. Mihara, H., Kurihara, T., Yoshimura, T., Soda, K., and Esaki, N. (1997) J. Biol. Chem. 272, 22417-22424
12. Behshad, E., Parkin, S. E., and Bollinger, J. M., Jr. (2004) Biochemistry (Mosc.) 43, 12220-12226
13. Zheng, L., White, R. H., Cash, V. L., and Dean, D. R. (1994) Biochemistry (Mosc.) 33, 4714-4720
14. Tirupati, B., Vey, J. L., Drennan, C. L., and Bollinger, J. M., Jr. (2004) Biochemistry (Mosc.) 43, 12210-12219
15. Mihara, H., Kurihara, T., Yoshimura, T., and Esaki, N. (2000) J. Biochem. (Tokyo) 127, 559-567
16. Smith, A. D., Jameson, G. N., Dos Santos, P. C., Agar, J. N., Naik, S., Krebs, C., Frazzon, J., Dean, D. R., Huynh, B. H., and Johnson, M. K. (2005) Biochemistry (Mosc.) 44, 12955-12969
17. Yuvaniyama, P., Agar, J. N., Cash, V. L., Johnson, M. K., and Dean, D. R. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 599-604
18. Nishio, K., and Nakai, M. (2000) J. Biol. Chem. 275, 22615-22618
19. Ouzounis, C., Bork, P., and Sander, C. (1994) Trends Biochem. Sci. 19, 199-200
20. Smith, A. D., Agar, J. N., Johnson, K. A., Frazzon, J., Amster, I. J., Dean, D. R., and Johnson, M. K. (2001) J. Am. Chem. Soc. 123, 11103-11104
21. Urbina, H. D., Silberg, J. J., Hoff, K. G., and Vickery, L. E. (2001) J. Biol. Chem. 276, 44521-44526
22. Kato, S., Mihara, H., Kurihara, T., Takahashi, Y., Tokumoto, U., Yoshimura, T., and Esaki, N. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 5948-5952
23. Loiseau, L., Ollagnier-de-Choudens, S., Nachin, L., Fontecave, M., and Barras, F. (2003) J. Biol. Chem. 278, 38352-38359
24. Outten, F. W., Wood, M. J., Munoz, F. M., and Storz, G. (2003) J. Biol. Chem. 278, 45713-45719
25. Goldsmith-Fischman, S., Kuzin, A., Edstrom, W. C., Benach, J., Shastry, R., Xiao, R., Acton, T. B., Honig, B., Montelione, G. T., and Hunt, J. F. (2004) J. Mol. Biol. 344, 549-565
26. Tokumoto, U., Nomura, S., Minami, Y., Mihara, H., Kato, S., Kurihara, T., Esaki, N., Kanazawa, H., Matsubara, H., and Takahashi, Y. (2002) J. Biochem. (Tokyo) 131, 713-719
27. Li, H., Singh, A. K., McIntyre, L. M., and Sherman, L. A. (2004) J. Bacteriol. 186, 3331-3345
28. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., Kimura, T., Hosouchi, T., Matsuno, A., Muraki, A., Nakazaki, N., Naruo, K., Okumura, S., Shimpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M., and Tabata, S. (1996) DNA Res. 3, 109-136
29. Burja, A. M., Dhamwichukorn, S., and Wright, P. C. (2003) Trends Biotechnol. 21, 504-511
30. Seidler, A., Jaschkowitz, K., and Wollenberg, M. (2001) Biochem. Soc. Trans. 29, 418-421
31. Kessler, D., and Papenbrock, J. (2005) Photosynth. Res. 86, 391-407
32. Jaschkowitz, K., and Seidler, A. (2000) Biochemistry (Mosc.) 39, 3416-3423
33. Kato, S., Mihara, H., Kurihara, T., Yoshimura, T., and Esaki, N. (2000) Biosci. Biotechnol. Biochem. 64, 2412-2419
34. Kessler, D. (2004) Biochem. Biophys. Res. Commun. 320, 571-577
35. Leon, S., Touraine, B., Ribot, C., Briat, J. F., and Lobreaux, S. (2003) Biochem. J. 371, 823-830
36. Leibrecht, I., and Kessler, D. (1997) J. Biol. Chem. 272, 10442-10447
37. Bui, B. T., Escalettes, F., Chottard, G., Florentin, D., and Marquet, A. (2000) Eur. J. Biochem. 267, 2688-2694
38. Lang, T., and Kessler, D. (1999) J. Biol. Chem. 274, 189-195
39. Kaiser, J. T., Bruno, S., Clausen, T., Huber, R., Schiaretti, F., Mozzarelli, A., and Kessler, D. (2003) J. Biol. Chem. 278, 357-365
40. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
41. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
42. Gouet, P., Courcelle, E., Stuart, D. I., and Metoz, F. (1999) Bioinformatics (Oxf.) 15, 305-308
43. Henry, E. R., and Hofrichter, J. (1992) Methods Enzymol. 210, 129-192
44. Henry, E. R. (1997) Biophys. J. 72, 652-673
45. Hendler, R. W., and Shrager, R. I. (1994) J. Biochem. Biophys. Methods 28, 1-33
46. Ouzounis, C., and Sander, C. (1993) FEBS Lett. 322, 159-164
47. Binkowski, T. A., Naghibzadeh, S., and Liang, J. (2003) Nucleic Acids Res. 31, 3352-3355
48. Pioselli, B., Bettati, S., Demidkina, T. V., Zakomirdina, L. N., Phillips, R. S., and Mozzarelli, A. (2004) Protein Sci. 13, 913-924
49. Vazquez, M. A., Munoz, F., Donoso, J., and Garcia Blanco, F. (1991) Biochem. J. 279, 759-767
50. Donoso, J., Munoz, F., and Garcia Blanco, F. (1993) Biochem. J. 292, 225-229
51. Kallen, R. G., Korpella, T., Martell, D. E., Matsushima, Y., Metzler, C. M., Metzler, D. E., Morozov, Y. M., Ralson, I. M., Sanvin, F., Torchinsky, Y. M., and Ueno, H. (1985) in Transaminases (Christen, P., and Metzler, D. E., eds) pp. 37-108, Wiley InterScience, New York
52. Jones, P. R., Manabe, T., Awazuhara, M., and Saito, K. (2003) J. Biol. Chem. 278, 10291-10296
53. Fujii, T., Maeda, M., Mihara, H., Kurihara, T., Esaki, N., and Hata, Y. (2000) Biochemistry (Mosc.) 39, 1263-1273
54. Ramirez, E. C., and Whitaker, J. R. (1998) J. Food Biochem. 22, 427-440
55. Hamamoto, A., and Mazelis, M. (1986) Plant Physiol. 80, 702-706
56. Ukai, K., and Sekiya, J. (1997) Biosci. Biotechnol. Biochem. 61, 1890-1895
57. Lancaster, J. E., Shaw, M. L., Joyce, M. D., McCallum, J. A., and McManus, M. T. (2000) Plant Physiol. 122, 1269-1279
58. Breitinger, U., Clausen, T., Ehlert, S., Huber, R., Laber, B., Schmidt, F., Pohl, E., and Messerschmidt, A. (2001) Plant Physiol. 126, 631-642
59. Allakhverdiev, S. I., Nishiyama, Y., Miyairi, S., Yamamoto, H., Inagaki, N., Kanesaki, Y., and Murata, N. (2002) Plant Physiol. 130, 1443-1453
60. Gill, R. T., Katsoulakis, E., Schmitt, W., Taroncher-Oldenburg, G., Misra, J., and Stephanopoulos, G. (2002) J. Bacteriol. 184, 3671-3681
61. Hihara, Y., Kamei, A., Kanehisa, M., Kaplan, A., and Ikeuchi, M. (2001) Plant Cell 13, 793-806
62. Huang, L., McCluskey, M. P., Ni, H., and LaRossa, R. A. (2002) J. Bacteriol. 184, 6845-6858
63. Hihara, Y., Sonoike, K., Kanehisa, M., and Ikeuchi, M. (2003) J. Bacteriol. 185, 1719-1725
64. Singh, A. K., McIntyre, L. M., and Sherman, L. A. (2003) Plant Physiol. 132, 1825-1839
65. Tai, C. H., and Cook, P. F. (2000) Adv. Enzymol. Relat. Areas Mol. Biol. 74, 185-234
66. Miles, E. W. (1979) Adv. Enzymol. Relat. Areas Mol. Biol. 49, 127-186
67. Woehl, E. U., Tai, C. H., Dunn, M. F., and Cook, P. F. (1996) Biochemistry (Mosc.) 35, 4776-4783
68. Roy, M., Miles, E. W., Phillips, R. S., and Dunn, M. F. (1988) Biochemistry (Mosc.) 27, 8661-8669
69. Maniscalco, S. J., Tally, J. F., and Fisher, H. F. (2004) Arch. Biochem. Biophys. 425, 165-172
70. Bernasconi, C. F. (1976) Relaxation Kinetics, pp. 141-157, Academic Press, Inc., New York
71. Flint, D. H., Tuminello, J. F., and Miller, T. J. (1996) J. Biol. Chem. 271, 16053-16067
72. Jenkins, W. T., Yphantis, D. A., and Sizer, I. W. (1959) J. Biol. Chem. 234, 51-57
73. Jenkins, W. T., and Sizer, I. W. (1959) J. Biol. Chem. 234, 1179-1181
74. Goldberg, J. M., Swanson, R. V., Goodman, H. S., and Kirsch, J. F. (1991) Biochemistry (Mosc.) 30, 305-312
75. Hester, G., Stark, W., Moser, M., Kallen, J., Markovic-Housley, Z., and Jansonius, J. N. (1999) J. Mol. Biol. 286, 829-850
76. Kaiser, J. T., Clausen, T., Bourenkow, G. P., Bartunik, H. D., Steinbacher, S., and Huber, R. (2000) J. Mol. Biol. 297, 451-464
77. Cupp-Vickery, J. R., Urbina, H., and Vickery, L. E. (2003) J. Mol. Biol. 330, 1049-1059
78. Iciek, M., and Wlodek, L. (2001) Pol. J. Pharmacol. 53, 215-225
79. Everett, S. A., and Wardman, P. (1995) Methods Enzymol. 251, 55-69
80. Zheng, L., White, R. H., Cash, V. L., Jack, R. F., and Dean, D. R. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 2754-2758
81. Miles, E. W. (1991) Adv. Enzymol. Relat. Areas Mol. Biol. 64, 93-172
82. Banerjee, R., Evande, R., Kabil, O., Ojha, S., and Taoka, S. (2003) Biochim. Biophys. Acta 1647, 30-35
83. Miles, E. W., and Kraus, J. P. (2004) J. Biol. Chem. 279, 29871-29874
84. Phillips, R. S., Demidkina, T. V., and Faleev, N. G. (2003) Biochim. Biophys. Acta 1647, 167-172
85. Stal, L. J. (1995) New Phytol. 131, 1-32