-
1
-
-
0034703060
-
Global gene expression profiling in Escherichia coli K12. The effects of integration host factor
-
Arfin, S. M., A. D. Long, E. T. Ito, L. Tolleri, M. M. Riehle, E. S. Paegle, and G. W. Hatfield. 2000. Global gene expression profiling in Escherichia coli K12. The effects of integration host factor. J. Biol. Chem. 275:29672-29684.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29672-29684
-
-
Arfin, S.M.1
Long, A.D.2
Ito, E.T.3
Tolleri, L.4
Riehle, M.M.5
Paegle, E.S.6
Hatfield, G.W.7
-
2
-
-
0035899432
-
Iron deficiency induces the formation of an antenna ring around trimeric photosystem I in cyanobacteria
-
Bibby, T. S., J. Nield, and J. Barber. 2001. Iron deficiency induces the formation of an antenna ring around trimeric photosystem I in cyanobacteria. Nature 412:743-745.
-
(2001)
Nature
, vol.412
, pp. 743-745
-
-
Bibby, T.S.1
Nield, J.2
Barber, J.3
-
3
-
-
0035899411
-
A giant chlorophyll-protein complex induced by iron deficiency in cyanobacteria
-
Boekema, E. J., A. Hifney, A. E. Yakushevska, M. Piotrowski, W. Keegstra, S. Berry, K. P. Michel, E. K. Pistorius, and J. Kruip. 2001. A giant chlorophyll-protein complex induced by iron deficiency in cyanobacteria. Nature 412:745-748.
-
(2001)
Nature
, vol.412
, pp. 745-748
-
-
Boekema, E.J.1
Hifney, A.2
Yakushevska, A.E.3
Piotrowski, M.4
Keegstra, W.5
Berry, S.6
Michel, K.P.7
Pistorius, E.K.8
Kruip, J.9
-
4
-
-
0031850630
-
Bacillus subtilis contains multiple Fur homologues: Identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors
-
Bsat, N., A. Herbig, L. Casillas-Martinez, P. Setlow, and J. D. Helmann. 1998. Bacillus subtilis contains multiple Fur homologues: identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors. Mol. Microbiol. 29:189-198.
-
(1998)
Mol. Microbiol.
, vol.29
, pp. 189-198
-
-
Bsat, N.1
Herbig, A.2
Casillas-Martinez, L.3
Setlow, P.4
Helmann, J.D.5
-
5
-
-
0027691224
-
The highly abundant chlorophyll-protein complex of iron-deficient Synechococcus sp. PCC7942 (CP43′) is encoded by the isiA gene
-
Burnap, R. L., T. Troyan, and L. A. Sherman. 1993. The highly abundant chlorophyll-protein complex of iron-deficient Synechococcus sp. PCC7942 (CP43′) is encoded by the isiA gene. Plant Physiol. 103:893-902.
-
(1993)
Plant Physiol.
, vol.103
, pp. 893-902
-
-
Burnap, R.L.1
Troyan, T.2
Sherman, L.A.3
-
6
-
-
0028861959
-
Bacillus subtilis MrgA is a Dps (PexB) homologue: Evidence for metalloregulation of an oxidative-stress gene
-
Chen, L., and J. D. Helmann. 1995. Bacillus subtilis MrgA is a Dps (PexB) homologue: evidence for metalloregulation of an oxidative-stress gene. Mol. Microbiol. 18:295-300.
-
(1995)
Mol. Microbiol.
, vol.18
, pp. 295-300
-
-
Chen, L.1
Helmann, J.D.2
-
7
-
-
0029152774
-
Coordinate regulation of Bacillus subtilis peroxide stress genes by hydrogen peroxide and metal ions
-
Chen, L., L. Keramati, and J. D. Helmann. 1995. Coordinate regulation of Bacillus subtilis peroxide stress genes by hydrogen peroxide and metal ions. Proc. Natl. Acad. Sci. USA 92:8190-8194.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 8190-8194
-
-
Chen, L.1
Keramati, L.2
Helmann, J.D.3
-
8
-
-
0035815274
-
Structural basis of the redox switch in the OxyR transcription factor
-
Choi, H., S. Kim, P. Mukhopadhyay, S. Cho, J. Woo, G. Storz, and S. Ryu. 2001. Structural basis of the redox switch in the OxyR transcription factor. Cell 105:103-113.
-
(2001)
Cell
, vol.105
, pp. 103-113
-
-
Choi, H.1
Kim, S.2
Mukhopadhyay, P.3
Cho, S.4
Woo, J.5
Storz, G.6
Ryu, S.7
-
9
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
Churchill, G. A. 2002. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32(Suppl.):490-495.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 490-495
-
-
Churchill, G.A.1
-
10
-
-
0030811368
-
Transcriptional and translational regulation of nitrogenase in light-dark- and continuous-light-grown cultures of the unicellular cyanobacterium Cyanothece sp. strain ATCC 51142
-
Colon-Lopez, M. S., D. M. Sherman, and L. A. Sherman. 1997. Transcriptional and translational regulation of nitrogenase in light-dark- and continuous-light-grown cultures of the unicellular cyanobacterium Cyanothece sp. strain ATCC 51142. J. Bacteriol. 179:4319-4327.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4319-4327
-
-
Colon-Lopez, M.S.1
Sherman, D.M.2
Sherman, L.A.3
-
11
-
-
0030052609
-
Permutation tests for multiple loci affecting a quantitative character
-
Doerge, R. W., and G. A. Churchill. 1996. Permutation tests for multiple loci affecting a quantitative character. Genetics 142:285-294.
-
(1996)
Genetics
, vol.142
, pp. 285-294
-
-
Doerge, R.W.1
Churchill, G.A.2
-
12
-
-
0037370308
-
Germline mutations in PRKCSH are associated with autosomal dominant polycystic liver disease
-
Drenth, J. P., R. H. te Morsche, R. Smink, J. S. Bonifacino, and J. B. Jansen. 2003. Germline mutations in PRKCSH are associated with autosomal dominant polycystic liver disease. Nat. Genet. 33:345-347.
-
(2003)
Nat. Genet.
, vol.33
, pp. 345-347
-
-
Drenth, J.P.1
Te Morsche, R.H.2
Smink, R.3
Bonifacino, J.S.4
Jansen, J.B.5
-
13
-
-
0036910689
-
Immunocytochemical localization of the stress-induced DpsA protein in the cyanobacterium Synechococcus sp. strain PCC 7942
-
Durham, K. A., and G. S. Bullerjahn. 2002. Immunocytochemical localization of the stress-induced DpsA protein in the cyanobacterium Synechococcus sp. strain PCC 7942. J. Basic Microbiol. 42:367-372.
-
(2002)
J. Basic Microbiol.
, vol.42
, pp. 367-372
-
-
Durham, K.A.1
Bullerjahn, G.S.2
-
14
-
-
0031446577
-
Expression and mutagenesis of the dpsA gene of Synechococcus sp. PCC 7942, encoding a DNA-binding protein involved in oxidative stress protection
-
Dwivedi, K., A. Sen, and G. S. Bullerjahn. 1997. Expression and mutagenesis of the dpsA gene of Synechococcus sp. PCC 7942, encoding a DNA-binding protein involved in oxidative stress protection. FEMS Microbiol. Lett. 155:85-91.
-
(1997)
FEMS Microbiol. Lett.
, vol.155
, pp. 85-91
-
-
Dwivedi, K.1
Sen, A.2
Bullerjahn, G.S.3
-
15
-
-
0035283138
-
Regulated phase transitions of bacterial chromatin: A non-enzymatic pathway for generic DNA protection
-
Frenkiel-Krispin, D., S. Levin-Zaidman, E. Shimoni, S. G. Wolf, E. J. Wachtel, T. Arad, S. E. Finkel, R. Kolter, and A. Minsky. 2001. Regulated phase transitions of bacterial chromatin: a non-enzymatic pathway for generic DNA protection. EMBO J. 20:1184-1191.
-
(2001)
EMBO J.
, vol.20
, pp. 1184-1191
-
-
Frenkiel-Krispin, D.1
Levin-Zaidman, S.2
Shimoni, E.3
Wolf, S.G.4
Wachtel, E.J.5
Arad, T.6
Finkel, S.E.7
Kolter, R.8
Minsky, A.9
-
16
-
-
0037076330
-
The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative
-
Fuangthong, M., and J. D. Helmann. 2002. The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative. Proc. Natl. Acad. Sci. USA 99:6690-6695.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6690-6695
-
-
Fuangthong, M.1
Helmann, J.D.2
-
17
-
-
0036267391
-
Regulation of the Bacillus subtilis fur and perR genes by PerR: Not all members of the PerR regulon are peroxide inducible
-
Fuangthong, M., A. F. Herbig, N. Bsat, and J. D. Helmann. 2002. Regulation of the Bacillus subtilis fur and perR genes by PerR: not all members of the PerR regulon are peroxide inducible. J. Bacteriol. 184:3276-3286.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3276-3286
-
-
Fuangthong, M.1
Herbig, A.F.2
Bsat, N.3
Helmann, J.D.4
-
18
-
-
0031959912
-
The crystal structure of Dps, a ferritin homolog that binds and protects DNA
-
Grant, R. A., D. J. Filman, S. E. Finkel, R. Kolter, and J. M. Hogle. 1998. The crystal structure of Dps, a ferritin homolog that binds and protects DNA. Nat. Struct. Biol. 5:294-303.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 294-303
-
-
Grant, R.A.1
Filman, D.J.2
Finkel, S.E.3
Kolter, R.4
Hogle, J.M.5
-
19
-
-
0021351203
-
Oxygen toxicity, oxygen radicals, transition metals and disease
-
Halliwell, B., and J. M. Gutteridge. 1984. Oxygen toxicity, oxygen radicals, transition metals and disease. Biochem. J. 219:1-14.
-
(1984)
Biochem. J.
, vol.219
, pp. 1-14
-
-
Halliwell, B.1
Gutteridge, J.M.2
-
20
-
-
0037215627
-
The global transcriptional response of Bacillus subtilis to peroxide stress is coordinated by three transcription factors
-
Helmann, J. D., M. F. Wu, A. Gaballa, P. A. Kobel, M. M. Morshedi, P. Fawcett, and C. Paddon. 2003. The global transcriptional response of Bacillus subtilis to peroxide stress is coordinated by three transcription factors. J. Bacteriol. 185:243-253.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 243-253
-
-
Helmann, J.D.1
Wu, M.F.2
Gaballa, A.3
Kobel, P.A.4
Morshedi, M.M.5
Fawcett, P.6
Paddon, C.7
-
21
-
-
0035723780
-
Roles of metal ions and hydrogen peroxide in modulating the interaction of the Bacillus subtilis PerR peroxide regulon repressor with operator DNA
-
Herbig, A. F., and J. D. Helmann. 2001. Roles of metal ions and hydrogen peroxide in modulating the interaction of the Bacillus subtilis PerR peroxide regulon repressor with operator DNA. Mol. Microbiol. 41:849-859.
-
(2001)
Mol. Microbiol.
, vol.41
, pp. 849-859
-
-
Herbig, A.F.1
Helmann, J.D.2
-
22
-
-
0035037364
-
DNA microarray analysis of cyanobacterial gene expression during acclimation to high light
-
Hihara, Y., A. Kamei, M. Kanehisa, A. Kaplan, and M. Ikeuchi. 2001. DNA microarray analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell 13:793-806.
-
(2001)
Plant Cell
, vol.13
, pp. 793-806
-
-
Hihara, Y.1
Kamei, A.2
Kanehisa, M.3
Kaplan, A.4
Ikeuchi, M.5
-
23
-
-
0037369852
-
DNA microarray analysis of redox-responsive genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803
-
Hihara, Y., K. Sonoike, M. Kanehisa, and M. Ikeuchi. 2003. DNA microarray analysis of redox-responsive genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803. J. Bacteriol. 185:1719-1725.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1719-1725
-
-
Hihara, Y.1
Sonoike, K.2
Kanehisa, M.3
Ikeuchi, M.4
-
24
-
-
0035013928
-
PerR controls oxidative stress resistance and iron storage proteins and is required for virulence in Staphylococcus aureus
-
Horsburgh, M. J., M. O. Clements, H. Crossley, E. Ingham, and S. J. Foster. 2001. PerR controls oxidative stress resistance and iron storage proteins and is required for virulence in Staphylococcus aureus. Infect. Immun. 69:3744-3754.
-
(2001)
Infect. Immun.
, vol.69
, pp. 3744-3754
-
-
Horsburgh, M.J.1
Clements, M.O.2
Crossley, H.3
Ingham, E.4
Foster, S.J.5
-
25
-
-
0035150765
-
In Staphylococcus aureus, Fur is an interactive regulator with PerR, contributes to virulence, and is necessary for oxidative stress resistance through positive regulation of catalase and iron homeostasis
-
Horsburgh, M. J., E. Ingham, and S. J. Foster. 2001. In Staphylococcus aureus, Fur is an interactive regulator with PerR, contributes to virulence, and is necessary for oxidative stress resistance through positive regulation of catalase and iron homeostasis. J. Bacteriol. 183:468-475.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 468-475
-
-
Horsburgh, M.J.1
Ingham, E.2
Foster, S.J.3
-
26
-
-
0035733752
-
The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster
-
Jin, W., R. M. Riley, R. D. Wolfinger, K. P. White, G. Passador-Gurgel, and G. Gibson. 2001. The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster. Nat. Genet. 29:389-395.
-
(2001)
Nat. Genet.
, vol.29
, pp. 389-395
-
-
Jin, W.1
Riley, R.M.2
Wolfinger, R.D.3
White, K.P.4
Passador-Gurgel, G.5
Gibson, G.6
-
27
-
-
0036289674
-
Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803
-
Kanesaki, Y., I., Suzuki, S. I. Allakhverdiev, K. Mikami, and N. Murata. 2002. Salt stress and hyperosmotic stress regulate the expression of different sets of genes in Synechocystis sp. PCC 6803. Biochem. Biophys. Res. Commun. 290:339-348.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.290
, pp. 339-348
-
-
Kanesaki, Y.1
Suzuki, I.2
Allakhverdiev, S.I.3
Mikami, K.4
Murata, N.5
-
28
-
-
0033517138
-
RsrA, an anti-sigma factor regulated by redox change
-
Kang, J. G., M. S. Paget, Y. J. Seok, M. Y. Hahn, J. B. Bae, J. S. Hahn, C. Kleanthous, M. J. Buttner, and J. H. Roe. 1999. RsrA, an anti-sigma factor regulated by redox change. EMBO J. 18:4292-4298.
-
(1999)
EMBO J.
, vol.18
, pp. 4292-4298
-
-
Kang, J.G.1
Paget, M.S.2
Seok, Y.J.3
Hahn, M.Y.4
Bae, J.B.5
Hahn, J.S.6
Kleanthous, C.7
Buttner, M.J.8
Roe, J.H.9
-
29
-
-
0000884487
-
Experimental design for gene expression microarrays
-
Kerr, M. K., and G. A. Churchill. 2001. Experimental design for gene expression microarrays. Biostatistics 2:183-201.
-
(2001)
Biostatistics
, vol.2
, pp. 183-201
-
-
Kerr, M.K.1
Churchill, G.A.2
-
30
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
Kerr, M. K., and G. A. Churchill. 2001. Statistical design and the analysis of gene expression microarray data. Genet. Res. 77:123-128.
-
(2001)
Genet. Res.
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
31
-
-
0032450522
-
Inactivation by gene disruption of 2-cysteine-peroxiredoxin in Synechocystis sp. PCC 6803 leads to increased stress sensitivity
-
Klughammer, B., M. Baier, and K. J. Dietz. 1998. Inactivation by gene disruption of 2-cysteine-peroxiredoxin in Synechocystis sp. PCC 6803 leads to increased stress sensitivity. Physiol. Plant. 104:699-706.
-
(1998)
Physiol. Plant.
, vol.104
, pp. 699-706
-
-
Klughammer, B.1
Baier, M.2
Dietz, K.J.3
-
32
-
-
0023750780
-
Isolation, sequence analysis, and transcriptional studies of the flavodoxin gene from Anacystis nidulans R2
-
Laudenbach, D. E., M. E. Reith, and N. A. Straus. 1988. Isolation, sequence analysis, and transcriptional studies of the flavodoxin gene from Anacystis nidulans R2. J. Bacteriol. 170:258-265.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 258-265
-
-
Laudenbach, D.E.1
Reith, M.E.2
Straus, N.A.3
-
33
-
-
0024109919
-
Characterization of a cyanobacterial iron stress-induced gene similar to psbC
-
Laudenbach, D. E., and N. A. Straus. 1988. Characterization of a cyanobacterial iron stress-induced gene similar to psbC. J. Bacteriol. 170:5018-5026.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 5018-5026
-
-
Laudenbach, D.E.1
Straus, N.A.2
-
34
-
-
0037334843
-
Global characterization of disulfide stress in Bacillus subtilis
-
Leichert, L. I., C. Scharf, and M. Hecker. 2003. Global characterization of disulfide stress in Bacillus subtilis. J. Bacteriol. 185:1967-1975.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1967-1975
-
-
Leichert, L.I.1
Scharf, C.2
Hecker, M.3
-
35
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
-
Long, A. D., H. J. Mangalam, B. Y. Chan, L. Tolleri, G. W. Hatfield, and P. Baldi. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem. 276:19937-19944.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19937-19944
-
-
Long, A.D.1
Mangalam, H.J.2
Chan, B.Y.3
Tolleri, L.4
Hatfield, G.W.5
Baldi, P.6
-
36
-
-
0030795074
-
Enhanced hydrogen peroxide sensitivity and altered stress protein expression in iron-starved Mycobacterium smegmatis
-
Lundrigan, M. D., J. E. Arceneaux, W. Zhu, and B. R. Byers. 1997. Enhanced hydrogen peroxide sensitivity and altered stress protein expression in iron-starved Mycobacterium smegmatis. Biometals 10:215-225.
-
(1997)
Biometals
, vol.10
, pp. 215-225
-
-
Lundrigan, M.D.1
Arceneaux, J.E.2
Zhu, W.3
Byers, B.R.4
-
37
-
-
0041305844
-
Identification of histidine kinases that act as sensors in the perception of salt stress in Synechocystis sp. PCC 6803
-
Marin, K., I. Suzuki, K. Yamaguchi, K. Ribbeck, H. Yamamoto, Y. Kanesaki, M. Hagemann, and N. Murata. 2003. Identification of histidine kinases that act as sensors in the perception of salt stress in Synechocystis sp. PCC 6803. Proc. Natl. Acad. Sci. USA 100:9061-9066.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 9061-9066
-
-
Marin, K.1
Suzuki, I.2
Yamaguchi, K.3
Ribbeck, K.4
Yamamoto, H.5
Kanesaki, Y.6
Hagemann, M.7
Murata, N.8
-
38
-
-
0033947901
-
Circumventing multiple testing: A multilocus Monte Carlo approach to testing for association
-
McIntyre, L. M., E. R. Martin, K. L. Simonsen, and N. L. Kaplan. 2000. Circumventing multiple testing: a multilocus Monte Carlo approach to testing for association. Genet. Epidemiol. 19:18-29.
-
(2000)
Genet. Epidemiol.
, vol.19
, pp. 18-29
-
-
McIntyre, L.M.1
Martin, E.R.2
Simonsen, K.L.3
Kaplan, N.L.4
-
39
-
-
0031403405
-
Temporal changes in state transitions and photosystem organization in the unicellular, diazotrophic cyanobacterium Cyanothece sp. ATCC 51142
-
Meunier, P. C., M. S. Colon-Lopez, and L. A. Sherman. 1997. Temporal changes in state transitions and photosystem organization in the unicellular, diazotrophic cyanobacterium Cyanothece sp. ATCC 51142. Plant Physiol. 115:991-1000.
-
(1997)
Plant Physiol.
, vol.115
, pp. 991-1000
-
-
Meunier, P.C.1
Colon-Lopez, M.S.2
Sherman, L.A.3
-
40
-
-
0036047508
-
Regulation of inducible peroxide stress responses
-
Mongkolsuk, S., and J. D. Helmann. 2002. Regulation of inducible peroxide stress responses. Mol. Microbiol. 45:9-15.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 9-15
-
-
Mongkolsuk, S.1
Helmann, J.D.2
-
41
-
-
0041411451
-
Quantitative comparison of image analysis software
-
S. Shah and G. Kamberova (ed.). DNA Press, Eagleville, Pa
-
Moody, D., B. Fadlia, A. Singh, S. Shah, and L. M. McIntyre. 2002. Quantitative comparison of image analysis software, p. 155-166. In S. Shah and G. Kamberova (ed.), Microarray image analysis-nuts & bolts. DNA Press, Eagleville, Pa.
-
(2002)
Microarray Image Analysis - Nuts & Bolts
, pp. 155-166
-
-
Moody, D.1
Fadlia, B.2
Singh, A.3
Shah, S.4
McIntyre, L.M.5
-
42
-
-
0030221380
-
The cyanobacterial thioredoxin gene is required for both photoautotrophic and heterotrophic growth
-
Navarro, F., and F. J. Florencio. 1996. The cyanobacterial thioredoxin gene is required for both photoautotrophic and heterotrophic growth. Plant Physiol. 111:1067-1075.
-
(1996)
Plant Physiol.
, vol.111
, pp. 1067-1075
-
-
Navarro, F.1
Florencio, F.J.2
-
43
-
-
0035886704
-
Oxidative stress inhibits the repair of photodamage to the photosynthetic machinery
-
Nishiyama, Y., H. Yamamoto, S. I. Allakhverdiev, M. Inaba, A. Yokota, and N. Murata. 2001. Oxidative stress inhibits the repair of photodamage to the photosynthetic machinery. EMBO J. 20:5587-5594.
-
(2001)
EMBO J.
, vol.20
, pp. 5587-5594
-
-
Nishiyama, Y.1
Yamamoto, H.2
Allakhverdiev, S.I.3
Inaba, M.4
Yokota, A.5
Murata, N.6
-
44
-
-
0036789519
-
Variation in gene expression within and among natural populations
-
Oleksiak, M. F., G. A. Churchill, and D. L. Crawford. 2002. Variation in gene expression within and among natural populations. Nat. Genet. 32:261-266.
-
(2002)
Nat. Genet.
, vol.32
, pp. 261-266
-
-
Oleksiak, M.F.1
Churchill, G.A.2
Crawford, D.L.3
-
45
-
-
0007094134
-
Organization of pigment proteins in the photosystem II complex of the cyanobacterium Anacystis nidulans R2
-
Pakrasi, H. B., H. C. Riethman, and L. A. Sherman. 1985. Organization of pigment proteins in the photosystem II complex of the cyanobacterium Anacystis nidulans R2. Proc. Natl. Acad. Sci. USA 82:6903-6907.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 6903-6907
-
-
Pakrasi, H.B.1
Riethman, H.C.2
Sherman, L.A.3
-
46
-
-
0029082683
-
The DpsA protein of Synechococcus sp. strain PCC7942 is a DNA-binding hemoprotein. Linkage of the Dps and bacterioferritin protein families
-
Pena, M. M., and G. S. Bullerjahn. 1995. The DpsA protein of Synechococcus sp. strain PCC7942 is a DNA-binding hemoprotein. Linkage of the Dps and bacterioferritin protein families. J. Biol. Chem. 270:22478-22482.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22478-22482
-
-
Pena, M.M.1
Bullerjahn, G.S.2
-
47
-
-
0347621463
-
Statistical implications of pooling RNA samples for microarray experiments
-
Peng, X., C. L. Wood, E. M. Blalock, K. C. Chen, P. W. Landfield, and A. J. Stromberg. 2003. Statistical implications of pooling RNA samples for microarray experiments. BMC Bioinformatics 4:26.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 26
-
-
Peng, X.1
Wood, C.L.2
Blalock, E.M.3
Chen, K.C.4
Landfield, P.W.5
Stromberg, A.J.6
-
49
-
-
0035283587
-
Redox-operated genetic switches: The SoxR and OxyR transcription factors
-
Pomposiello, P. J., and B. Demple. 2001. Redox-operated genetic switches: the SoxR and OxyR transcription factors. Trends Biotechnol. 19:109-114.
-
(2001)
Trends Biotechnol.
, vol.19
, pp. 109-114
-
-
Pomposiello, P.J.1
Demple, B.2
-
50
-
-
9444248636
-
The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy
-
Postier, B. L., H. L. Wang, A. Singh, L. Impson, H. L. Andrews, J. Klahn, H. Li, G. Risinger, D. Pesta, M. Deyholos, D. W. Galbraith, L. A. Sherman, and R. L. Burnap. 2003. The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy. BMC Genomics 4:23.
-
(2003)
BMC Genomics
, vol.4
, pp. 23
-
-
Postier, B.L.1
Wang, H.L.2
Singh, A.3
Impson, L.4
Andrews, H.L.5
Klahn, J.6
Li, H.7
Risinger, G.8
Pesta, D.9
Deyholos, M.10
Galbraith, D.W.11
Sherman, L.A.12
Burnap, R.L.13
-
51
-
-
0038957365
-
Transcriptional regulation of glutaredoxin and thioredoxin pathways and related enzymes in response to oxidative stress
-
Prieto-Alamo, M. J., J. Jurado, R. Gallardo-Madueno, F. Monje-Casas, A. Holmgren, and C. Pueyo. 2000. Transcriptional regulation of glutaredoxin and thioredoxin pathways and related enzymes in response to oxidative stress. J. Biol. Chem. 275:13398-13405.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 13398-13405
-
-
Prieto-Alamo, M.J.1
Jurado, J.2
Gallardo-Madueno, R.3
Monje-Casas, F.4
Holmgren, A.5
Pueyo, C.6
-
52
-
-
0025342916
-
Bacterial RNA isolation with one hour centrifugation in a table-top ultracentrifuge
-
Reddy, K. J., R. Webb, and L. A. Sherman. 1990. Bacterial RNA isolation with one hour centrifugation in a table-top ultracentrifuge. BioTechniques 8:250-251.
-
(1990)
BioTechniques
, vol.8
, pp. 250-251
-
-
Reddy, K.J.1
Webb, R.2
Sherman, L.A.3
-
53
-
-
0036619365
-
Occurence and biochemistry of hydroperoxidases in oxygenic phototrophic prokaryotes (cyanobacteria)
-
Regelsberger, G., C. Jakopitsch, L. Plasser, H. Schwaiger, P. G. Furtmuller, G. A. Peschek, M. Zamocky, and C. Obinger. 2002. Occurence and biochemistry of hydroperoxidases in oxygenic phototrophic prokaryotes (cyanobacteria). Plant Physiol. Biochem. 40:479-490.
-
(2002)
Plant Physiol. Biochem.
, vol.40
, pp. 479-490
-
-
Regelsberger, G.1
Jakopitsch, C.2
Plasser, L.3
Schwaiger, H.4
Furtmuller, P.G.5
Peschek, G.A.6
Zamocky, M.7
Obinger, C.8
-
54
-
-
0034770083
-
Roles of thiol-redox pathways in bacteria
-
Ritz, D., and J. Beckwith. 2001. Roles of thiol-redox pathways in bacteria. Annu. Rev. Microbiol. 55:21-48.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 21-48
-
-
Ritz, D.1
Beckwith, J.2
-
55
-
-
0037834629
-
Evidence that peroxiredoxins are novel members of the thioredoxin fold superfamily
-
Schroder, E., and C. P. Ponting. 1998. Evidence that peroxiredoxins are novel members of the thioredoxin fold superfamily. Protein Sci. 7:2465-2468.
-
(1998)
Protein Sci.
, vol.7
, pp. 2465-2468
-
-
Schroder, E.1
Ponting, C.P.2
-
56
-
-
0034044843
-
Growth phase and metal-dependent regulation of the dpsA gene in Synechococcus sp. strain PCC 7942, USA
-
Sen, A., K. Dwivedi, K. A. Rice, and G. S. Bullerjahn. 2000. Growth phase and metal-dependent regulation of the dpsA gene in Synechococcus sp. strain PCC 7942, USA. Arch. Microbiol. 173:352-357.
-
(2000)
Arch. Microbiol.
, vol.173
, pp. 352-357
-
-
Sen, A.1
Dwivedi, K.2
Rice, K.A.3
Bullerjahn, G.S.4
-
57
-
-
1642506307
-
Microarray analysis and redox control of gene expression in the cyanobacterium Synechocystis sp. PCC 6803
-
Singh, A. K., H. Li, and L. A. Sherman. 2004. Microarray analysis and redox control of gene expression in the cyanobacterium Synechocystis sp. PCC 6803. Physiol. Plant. 120:27-35.
-
(2004)
Physiol. Plant.
, vol.120
, pp. 27-35
-
-
Singh, A.K.1
Li, H.2
Sherman, L.A.3
-
58
-
-
0042466180
-
Microarray analysis of the genome-wide response to iron deficiency and iron reconstitution in the cyanobacterium Synechocystis sp. PCC 6803
-
Singh, A. K., L. M. McIntyre, and L. A. Sherman. 2003. Microarray analysis of the genome-wide response to iron deficiency and iron reconstitution in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiol. 132:1825-1839.
-
(2003)
Plant Physiol.
, vol.132
, pp. 1825-1839
-
-
Singh, A.K.1
McIntyre, L.M.2
Sherman, L.A.3
-
59
-
-
0037019798
-
Characterization of a stress-responsive operon in the cyanobacterium Synechocystis sp. strain PCC 6803
-
Singh, A. K., and L. A. Sherman. 2002. Characterization of a stress-responsive operon in the cyanobacterium Synechocystis sp. strain PCC 6803. Gene 297:11-19.
-
(2002)
Gene
, vol.297
, pp. 11-19
-
-
Singh, A.K.1
Sherman, L.A.2
-
61
-
-
0002463721
-
Oxidative stress
-
G. Storz and R. Hengge-Aronis (ed.). ASM Press, Washington, D.C.
-
Storz, G., and M. Zheng. 2000. Oxidative stress, p. 47-59. In G. Storz and R. Hengge-Aronis (ed.), Bacterial stress response. ASM Press, Washington, D.C.
-
(2000)
Bacterial Stress Response
, pp. 47-59
-
-
Storz, G.1
Zheng, M.2
-
62
-
-
0034944405
-
Complex regulation of the organic hydroperoxide resistance gene (ohr) from Xanthomonas involves OhrR, a novel organic peroxide-inducible negative regulator, and posttranscriptional modifications
-
Sukchawalit, R., S. Loprasert, S. Atichartpongkul, and S. Mongkolsuk. 2001. Complex regulation of the organic hydroperoxide resistance gene (ohr) from Xanthomonas involves OhrR, a novel organic peroxide-inducible negative regulator, and posttranscriptional modifications. J. Bacteriol. 183:4405-4412.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 4405-4412
-
-
Sukchawalit, R.1
Loprasert, S.2
Atichartpongkul, S.3
Mongkolsuk, S.4
-
63
-
-
0032987969
-
In vivo role of catalase-peroxidase in Synechocystis sp. strain PCC 6803
-
Tichy, M., and W. Vermaas. 1999. In vivo role of catalase-peroxidase in Synechocystis sp. strain PCC 6803. J. Bacteriol. 181:1875-1882.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1875-1882
-
-
Tichy, M.1
Vermaas, W.2
-
64
-
-
0347364625
-
Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide
-
Tottey, S., M. A. Block, M. Allen, T. Westergren, C. Albrieux, H. V. Scheller, S. Merchant, and P. E. Jensen. 2003. Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide. Proc. Natl. Acad. Sci. USA 100:16119-16124.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 16119-16124
-
-
Tottey, S.1
Block, M.A.2
Allen, M.3
Westergren, T.4
Albrieux, C.5
Scheller, H.V.6
Merchant, S.7
Jensen, P.E.8
-
65
-
-
0032716842
-
Campylobacter jejuni contains two Fur homologs: Characterization of iron-responsive regulation of peroxide stress defense genes by the PerR repressor
-
van Vliet, A. H., M. L. Baillon, C. W. Penn, and J. M. Ketley. 1999. Campylobacter jejuni contains two Fur homologs: characterization of iron-responsive regulation of peroxide stress defense genes by the PerR repressor. J. Bacteriol. 181:6371-6376.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 6371-6376
-
-
Van Vliet, A.H.1
Baillon, M.L.2
Penn, C.W.3
Ketley, J.M.4
-
66
-
-
0032719331
-
Identification of salt-regulated genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803 by subtractive RNA hybridization
-
Vinnemeier, J., and M. Hagemann. 1999. Identification of salt-regulated genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803 by subtractive RNA hybridization. Arch. Microbiol. 172:377-386.
-
(1999)
Arch. Microbiol.
, vol.172
, pp. 377-386
-
-
Vinnemeier, J.1
Hagemann, M.2
-
67
-
-
0032449840
-
Transcriptional analysis of the isiAB operon in salt-stressed cells of the cyanobacterium Synechocystis sp. PCC 6803
-
Vinnemeier, J., A. Kunert, and M. Hagemann. 1998. Transcriptional analysis of the isiAB operon in salt-stressed cells of the cyanobacterium Synechocystis sp. PCC 6803. FEMS Microbiol. Lett. 169:323-330.
-
(1998)
FEMS Microbiol. Lett.
, vol.169
, pp. 323-330
-
-
Vinnemeier, J.1
Kunert, A.2
Hagemann, M.3
-
68
-
-
0037069380
-
Combining mapping and arraying: An approach to candidate gene identification
-
Wayne, M. L., and L. M. McIntyre. 2002. Combining mapping and arraying: an approach to candidate gene identification. Proc. Natl. Acad. Sci. USA 99:14903-14906.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14903-14906
-
-
Wayne, M.L.1
McIntyre, L.M.2
-
69
-
-
0004156776
-
-
John Wiley & Sons, Inc., Somerset, N.J.
-
Westfall, P. H., and S. S. Young. 1993. Resampling-based multiple testing: examples and methods for p-value adjustment. John Wiley & Sons, Inc., Somerset, N.J.
-
(1993)
Resampling-Based Multiple Testing: Examples and Methods for p-Value Adjustment
-
-
Westfall, P.H.1
Young, S.S.2
-
70
-
-
0035687554
-
Assessing gene significance from cDNA microarray expression data via mixed models
-
Wolfinger, R. D., G. Gibson, E. D. Wolfinger, L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, and R. S. Paules. 2001. Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8:625-637.
-
(2001)
J. Comput. Biol.
, vol.8
, pp. 625-637
-
-
Wolfinger, R.D.1
Gibson, G.2
Wolfinger, E.D.3
Bennett, L.4
Hamadeh, H.5
Bushel, P.6
Afshari, C.7
Paules, R.S.8
-
71
-
-
0032971732
-
Thioredoxin peroxidase in the cyanobacterium Synechocystis sp. PCC 6803
-
Yamamoto, H., C. Miyake, K. J. Dietz, K. Tomizawa, N. Murata, and A. Yokota. 1999. Thioredoxin peroxidase in the cyanobacterium Synechocystis sp. PCC 6803. FEBS Lett. 447:269-273.
-
(1999)
FEBS Lett.
, vol.447
, pp. 269-273
-
-
Yamamoto, H.1
Miyake, C.2
Dietz, K.J.3
Tomizawa, K.4
Murata, N.5
Yokota, A.6
-
72
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang, Y. H., and T. Speed. 2002. Design issues for cDNA microarray experiments. Nat. Rev. Genet. 3:579-588.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
73
-
-
0347625655
-
Comparative analysis of idiA and isiA transcription under iron starvation and oxidative stress in Synechococcus elongatus PCC 7942 wild-type and selected mutants
-
Yousef, N., E. K. Pistorius, and K. P. Michel. 2003. Comparative analysis of idiA and isiA transcription under iron starvation and oxidative stress in Synechococcus elongatus PCC 7942 wild-type and selected mutants. Arch. Microbiol. 180:471-483.
-
(2003)
Arch. Microbiol.
, vol.180
, pp. 471-483
-
-
Yousef, N.1
Pistorius, E.K.2
Michel, K.P.3
-
74
-
-
0035872073
-
An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression
-
Yue, H., P. S. Eastman, B. B. Wang, J. Minor, M. H. Doctolero, R. L. Nuttall, R. Stack, J. W. Becker, J. R. Montgomery, M. Vainer, and R. Johnston. 2001. An evaluation of the performance of cDNA microarrays for detecting changes in global mRNA expression. Nucleic Acids Res. 29:e41.
-
(2001)
Nucleic Acids Res.
, vol.29
-
-
Yue, H.1
Eastman, P.S.2
Wang, B.B.3
Minor, J.4
Doctolero, M.H.5
Nuttall, R.L.6
Stack, R.7
Becker, J.W.8
Montgomery, J.R.9
Vainer, M.10
Johnston, R.11
-
75
-
-
0032513362
-
Activation of the OxyR transcription factor by reversible disulfide bond formation
-
Zheng, M., F. Aslund, and G. Storz. 1998. Activation of the OxyR transcription factor by reversible disulfide bond formation. Science 279:1718-1721.
-
(1998)
Science
, vol.279
, pp. 1718-1721
-
-
Zheng, M.1
Aslund, F.2
Storz, G.3
|