Genome-wide dynamic transcriptional profiling of the light-to-dark transition in Synechocystis sp. strain PCC 6803

Journal of Bacteriology

Volumn 184, Issue 13, 2002, Pages 3671-3681

  Gill, Ryan T ^a   Katsoulakis, Eva ^a   Schmitt, William ^a   Taroncher Oldenburg, Gaspar ^a   Misra, Jatin ^a   Stephanopoulos, Gregory ^a  

^a Massachusetts Institute of Technology Cambridge   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; CYANOBACTERIUM; DNA MICROARRAY; LIGHT DARK CYCLE; NONHUMAN; PHOTOSYNTHESIS; PRIORITY JOURNAL;

CYANOBACTERIA; DARKNESS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; IMAGE PROCESSING, COMPUTER-ASSISTED; LIGHT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); MARTES PENNANTI; PROKARYOTA; SYNECHOCYSTIS; SYNECHOCYSTIS SP.;

EID: 0036286617     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.184.13.3671-3681.2002     Document Type: Article

References (67)

1. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
2. Expression of two nblA-homologous genes is required for phycobilisome degradation in nitrogen starved Synechocystis sp. PCC6803
3. Light regulation of type IV pilus-dependent motility by chemosensor-like elements in Synechocystis PCC6803
4. Isolation of regulated genes of the cyanobacterium Synechocystis sp. strain PCC6803 by differential display
5. The "anchor polypeptide" of cyanobacterial phycobilisomes. Molecular characterization of the Synechococcus sp. PCC6301 apce gene
6. Nucleotide sequence of psbC, the gene encoding the CP-43 chlorophyll a-binding protein of Photosystem II, in the cyanobacterium Synechocystis 6803
7. Molecular cloning of the genes encoding two chaperone proteins of the cyanobacterium Synechocystis sp. PCC6803
8. Molecular cloning and targeted mutagenesis of the gene psaF encoding subunit III of photosystem I from the cyanobacterium Synechocystis sp. PCC 6803
9. Targeted inactivation of the gene psaL encoding a subunit of photosystem I of the cyanobacterium Synechocystis sp. PCC6803
10. A genome-wide transcriptional analysis of the mitotic cell cycle
11. Separate photosensory pathways coregulated blue light/ltraviolet-A-activated psbD-psbC transcription and light-induced D2 and CP43 degradation in barley chloroplasts
12. A small polypeptide triggers complete degradation of light-harvesting phycobiliproteins in nutrient-deprived cyanobacteria
13. Exploring the metabolic and genetic control of gene expression on a genomic scale
14. Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays
15. Regulation of psbA and psaE expression by light quality in Synechocystis species PCC 6803. A redox control mechanism
16. Cloning and transcription analysis of the ndh(AIGE) gene cluster and the ndhD gene of the cyanobacterium Synechocystis sp. PCC6803
17. Light control of plant development
18. Characterization of the light-regulated operon encoding the phycoerythrin-associated linker proteins from the cyanobacterium Fremyella diplosiphon
19. Phototropism
20. Light-directed, spatially addressable parallel chemical synthesis
21. Chaperonin genes of the Synechocystis PCC 6803 are differentially regulated under light-dark transition during heat stress
22. Light harvesting by phycobilisomes
23. Light response
24. Response of cyanobacteria to light
25. The phycobilisome, a light-harvesting complex resonsive to environmental conditions
26. Orchestrated transcription of key pathways in arabidopsis by the circadian clock
27. The high light-inducible polypeptides in Synechocystis PCC6803. Expression and function in high light
28. DNA micro-array analysis of cyanobacterial gene expression during acclimation to high light
29. Type 2 NADH dehydrogenases in the cyanobacterium Synechocystis sp. strain PCC6803 are involved in regulation rather than respiration
30. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803 II. Sequence determination of the entire genome and assignment of potential protein-coding regions
31. DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
32. Light-induced expression of fatty acid desaturase genes
33. Nucleotide sequence of the petB gene encoding cytochrome b6 from the mesophilic cyanobacterium Synechocystis PCC 6803: Implications for evolution and function
34. Global analysis of the genetic network controlling a bacterial cell cycle
35. Regulation of gene expression by light
36. Enhancer activity of light-responsive regulatory elements in the untranslated leader regions of cyanobacterial psbA genes
37. The atpl and atp2 operons of the cyanobacterium Synechocystis sp. PCC6803
38. High density synthetic oligonucleotide arrays
39. Expression monitoring by hybridization to high-density oligonucleotide arrays
40. Primary structure of the psbN-psbH-petCpetA gene cluster of the cyanobacterium Synechocystis PCC6803
41. Nucleotide sequence of the psbA3 gene from the cyanobacterium Synechocystis PCC 6803
42. Temporal changes in state transitions and photosystem organization in the unicellular, diazotrophic cyanobacterium Cyanothece sp. ATCC51142
43. Differential expression of the psbA genes in the cyanobacterium Synechocystis 6803
44. Influence of light on accumulation of phtosynthesis-specific transcripts in the cyanobacterium Synechocystis 6803
45. How do cyanobacteria sense and respond to light?
46. Targeted inactivation of the gene psaI encoding a subunit of photosystem I of the cyanobacterium Synechocystis sp. PCC6803
47. A gene (ccmA) required for carboxysome formation in the cyanobacterium Synechocystis sp. strain PCC6803
48. Two types of functionally distinct NAD(P)H dehydrogenases in Synechocystis sp. strain PCC6803
49. Heterologous assembly and rescue of stranded phycocyanin subunits by expression of a foreign cpcBA operon in Synechocystis sp. strain 6803
50. Nucleotide sequence of a second psbA gene from the unicellular canobacterium Synechocystis 6803
51. Genomewide expression profiling in Escherichia coli K-12
52. Activation of the silent psbA1 gene in the cyanobacterium Synechocystis sp. strain 6803 produces a novel and functional D1 protein
53. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
54. Diurnal rhythms in metabolism: A day in the life of a unicellular diazotrophic cyanobacterium
55. Phycobilisome and phycobiliprotein structures
56. Identification of iron-responsive, differential gene expression in the cyanobacterium Synechocystis sp. strain PCC6803 with a customized amplification library
57. Expression of photosynthesis genes in cyanobacterium Synechocystis sp. PCC6803: psaA-B and psbA transcripts accumulate in dark-grown cells
58. Comprehensive identification of cell cycle regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
59. Identification of a second psaC gene in the cyanobacterium Synechocystis sp. PCC6803
60. Mapping physiological states from microarray expression measurements
61. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
62. Multiple rpoD-related genes of cyanobacteria
63. Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
64. Light-regulated transcription
65. Genome-wide expression monitoring in Saccharomyces cerevisiae