Crystal structure of the human AAA+ protein RuvBL1

Journal of Biological Chemistry

Volumn 281, Issue 50, 2006, Pages 38918-38929

  Matias, Pedro M ^a   Gorynia, Sabine ^a,b   Donner, Peter ^b   Carrondo, Maria Arménia ^a  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

^b BAYER PHARMA AG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN REMODELING; HEXAMER; MOLECULAR MOTOR; SIGNALING PATHWAYS;

BACTERIA; CRYSTAL STRUCTURE; DNA; HYDROLYSIS; MONOMERS; RNA;

PROTEINS;

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; ATPASE ASSOCIATED WITH DIVERSE CELLULAR ACTIVITIES; MONOMER; PROTEIN; PROTEIN RUVBL1; UNCLASSIFIED DRUG;

ARTICLE; COMPLEX FORMATION; CRYSTAL STRUCTURE; DNA BINDING; ENZYME ACTIVITY; HYDROLYSIS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CARRIER PROTEINS; CRYSTALLOGRAPHY, X-RAY; DNA HELICASES; DNA PRIMERS; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACIDS; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 33846007717     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M605625200     Document Type: Article

References (67)

1. Bauer, A., Huber, O., and Kemler, R. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 14787-14792
2. Shen, X., Mizuguchi, G., Hamiche, A., and Wu, C. (2000) Nature 406, 541-544
3. Ikura, T., Ogryzko, V. V., Grigoriev, M., Groisman, R., Wang, J., Horikoshi, M., Scully, R., Qin, J., and Nakatani, Y. (2000) Cell 102, 463-473
4. Kanemaki, M., Makino, Y., Yoshida, T., Kishimoto, T., Koga, A., Yamamoto, K., Yamamoto, M., Moncollin, V., Egly, J. M., Muramatsu, M., and Tamura, T. (1997) Biochem. Biophys. Res. Commun. 235, 64-68
5. Jonsson, Z. O., Dhar, S. K., Narlikar, G. J., Auty, R., Wagle, N., Pellman, D., Pratt, R. E., Kingston, R., and Dutta, A. (2001) J. Biol. Chem. 276, 16279-16288
6. Qiu, X. B., Lin, Y. L., Thome, K. C., Pian, P., Schlegel, B. P., Weremowicz, S., Parvin, J. D., and Dutta, A. (1998) J. Biol. Chem. 273, 27786-27793
7. Bauer, A., Chauvet, S., Huber, O., Usseglio, F., Rothbacher, U., Aragnol, D., Kemler, R., and Pradel, J. (2000) EMBO J. 19, 6121-6130
8. Jonsson, Z. O., Jha, S., Wohlschlegel, J. A., and Dutta, A. (2004) Mol. Cell 16, 465-477
9. Fuchs, M., Gerber, J., Drapkin, R., Sif, S., Ikura, T., Ogryzko, V., Lane, W. S., Nakatani, Y., and Livingston, D. M. (2001) Cell 106, 297-307
10. Teixeira, M. T., Dujon, B., and Fabre, E. (2002) J. Mol. Biol. 321, 551-561
11. Khorasanizadeh, S. (2004) Cell 116, 259-272
12. Stein, G. S., Zaidi, S. K., Braastad, C. D., Montecino, M., van Wijnen, A. J., Choi, J. Y., Stein, J. L., Lian, J. B., and Javed, A. (2003) Trends Cell Biol. 13, 584-592
13. Kusch, T., Florens, L., Macdonald, W. H., Swanson, S. K., Glaser, R. L., Yates, J. R., III, Abmayr, S. M., Washburn, M. P., and Workman, J. L. (2004) Science 306, 2084-2087
14. Wood, M. A., McMahon, S. B., and Cole, M. D. (2000) Mol. Cell 5, 321-330
15. Dugan, K. A., Wood, M. A., and Cole, M. D. (2002) Oncogene 21, 5835-5843
16. Feng, Y., Lee, N., and Fearon, E. R. (2003) Cancer Res. 63, 8726-8734
17. Newman, D. R., Kuhn, J. F., Shanab, G. M., and Maxwell, E. S. (2000) RNA 6, 861-879
18. King, T. H., Decatur, W. A., Bertrand, E., Maxwell, E. S., and Fournier, M. J. (2001) Mol. Cell. Biol. 21, 7731-7746
19. Gartner, W., Rossbacher, J., Zierhut, B., Daneva, T., Base, W., Weissel, M., Waldhausl, W., Pasternack, M. S., and Wagner, L. (2003) Cell Motil. Cytoskeleton 56, 79-93
20. Neuwald, A. F., Aravind, L., Spouge, J. L., and Koonin, E. V. (1999) Genome Res. 9, 27-43
21. Gorbalenya, A. E., Koonin, E. V., Donchenko, A. P., and Blinov, V. M. (1989) Nucleic Acids Res. 17, 4713-4730
22. Schmid, S. R., and Linder, P. (1992) Mol. Microbiol. 6, 283-291
23. Patel, S., and Latterich, M. (1998) Trends Cell Biol. 8, 65-71
24. Putnam, C. D., Clancy, S. B., Tsuruta, H., Gonzalez, S., Wetmur, J. G., and Tainer, J. A. (2001) J. Mol. Biol. 311, 297-310
25. Yamada, K., Kunishima, N., Mayanagi, K., Ohnishi, T., Nishino, T., Iwasaki, H., Shinagawa, H., and Morikawa, K. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 1442-1447
26. Tsaneva, I. R., Muller, B., and West, S. C. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 1315-1319
27. Gorynia, S., Matias, P. M., Gonçalves, S., Coelho, R., Thomaz, M., Haendler, B., Donner, P., and Carrondo, M. A. (2006) Acta Crystallogr. Sect. F 62, 61-66
28. Kabsch, W. (1993) J. Appl. Crystallogr. 26, 795-800
29. Collaborative Computational Project Number 4 (1994) Acta Crystallogr. Sect. D 50, 760-763
30. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect A 47, 110-119
31. Roussel, A., Fontecilla-Camps, J. C., and Cambillau, C. (1990) in XV IUCr Congress Abstracts, pp. 66-67, International Union of Crystallography Bordeaux, France
32. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D 53, 240-255
33. Schomaker, V., and Trueblood, K. N. (1968) Acta Crystallogr. Sect. B 24, 63-76
34. Lamzin, V. S., and Wilson, K. S. (1993) Acta Crystallogr. Sect. D 49, 129-147
35. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
36. Ramachandran, G. N., and Sasisekharan, V. (1968) Adv. Prot. Chem. 23, 283-438
37. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) Nucleic Acids Res. 28, 235-242
38. Lenzen, C. U., Steinmann, D., Whiteheart, S. W., and Weis, W. I. (1998) Cell 94, 525-536
39. Li, D., Zhao, R., Lilyestrom, W., Gai, D., Zhang, R., DeCaprio, J. A., Fanning, E., Jochimiak, A., Szakonyi, G., and Chen, X. S. (2003) Nature 423, 512-518
40. Gai, D., Zhao, R., Li, D., Finkielstein, C. V., and Chen, X. S. (2004) Cell 119, 47-60
41. Enemark, E. J., and Joshua-Tor, L. (2006) Nature 442, 270-275
42. Rappas, M., Schumacher, J., Niwa, H., Buck, M., and Zhang, X. (2006) J. Mol. Biol. 357, 481-492
43. Mancini, E. J., Kainov, D. E., Grimes, J. M., Tuma, R., Bamford, D. H., and Stuart, D. I. (2004) Cell 118, 743-755
44. Holm, L., and Sander, C. (1993) J. Mol. Biol. 233, 123-138
45. Bochkarev, A., Pfuetzner, R. A., Edwards, A. M., and Frappier, L. (1997) Nature 385, 176-181
46. Sullivan, C. S., and Pipas, J. M. (2002) Microbiol. Mol. Biol. Rev. 66, 179-202
47. Borowiec, J. A., Dean, F. B., Bullock, P. A., and Hurwitz, J. (1990) Cell 60, 181-184
48. Niedenzu, T., Roleke, D., Bains, G., Scherzinger, E., and Saenger, W. (2001) J. Mol. Biol. 306, 479-487
49. Singleton, M. R., Sawaya, M. R., Ellenberger, T., and Wigley, D. B. (2000) Cell 101, 589-600
50. Fletcher, R. J., Bishop, B. E., Leon, R. P., Sclafani, R. A., Ogata, C. M., and Chen, X. S. (2003) Nat. Struct. Biol. 10, 160-167
51. Ahnert, P., and Patel, S. S. (1997) J. Biol. Chem. 272, 32267-32273
52. Kaplan, D. L., and Steitz, T. A. (1999) J. Biol. Chem. 274, 6889-6897
53. Yu, X., Hingorani, M. M., Patel, S. S., and Egelman, E. H. (1996) Nat. Struct. Biol. 3, 740-743
54. Makino, Y., Kanemaki, M., Kurokawa, Y., Koji, T., and Tamura, T. (1999) J. Biol. Chem. 274, 15329-15335
55. Carlson, M. L., Wilson, E. T., and Prescott, S. M. (2003) Mol. Cancer 2, 42
56. Watkins, N. J., Lemm, I., Ingelfinger, D., Schneider, C., Hossbach, M., Urlaub, H., and Luhrmann, R. (2004) Mol. Cell 16, 789-798
57. Allen, G. C., Jr., and Kornberg, A. (1991) J. Biol. Chem. 266, 22096-22101
58. Ayora, S., Stasiak, A., and Alonso, J. C. (1999) J. Mol. Biol. 288, 71-85
59. Tarumi, K., and Yonesaki, T. (1995) J. Biol. Chem. 270, 2614-2619
60. Ustav, M., Ustav, E., Szymanski, P., and Stenlund, A. (1991) EMBO J. 10, 4321-4329
61. Friedberg, E. C., Walker, G. C., Siede, W., Wood, R. D., Schultz, R. A., and Ellenberger, T. (2005) DNA Repair and Mutagenesis, 2nd Ed., pp. 569-613, American Society for Microbiology, Washington, D. C.
62. Grant, P. A., Schieltz, D., Pray-Grant, M. G., Steger, D. J., Reese, J. C., Yates, J. R., III, and Workman, J. L. (1998) Cell 94, 45-53
63. Ogryzko, V. V., Kotani, T., Zhang, X., Schiltz, R. L., Howard, T., Yang, X. J., Howard, B. H., Qin, J., and Nakatani, Y. (1998) Cell 94, 35-44
64. Wallace, A. C., Laskowski, R. A., and Thornton, J. M. (1995) Protein Eng. 8, 127-134
65. Sanner, M. F., Olson, A. J., and Spehner, J. C. (1996) Biopolymers 38, 305-320
66. Hubbard, S. J., and Thornton, J. M. (1993) NACCESS, Department of Biochemistry and Molecular Biology, University College, London
67. McDonald, I. K., and Thornton, J. M. (1994) J. Mol. Biol. 238, 777-793