-
1
-
-
0029998895
-
Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: Evidence for viral compartmentalization and selection during sexual transmission
-
Zhu T, Wang N, Carr A, Nam DS, Moor-Jankowski R, Cooper DA, Ho DD. Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: evidence for viral compartmentalization and selection during sexual transmission. J Virol 1996; 70:3098-3107.
-
(1996)
J Virol
, vol.70
, pp. 3098-3107
-
-
Zhu, T.1
Wang, N.2
Carr, A.3
Nam, D.S.4
Moor-Jankowski, R.5
Cooper, D.A.6
Ho, D.D.7
-
2
-
-
0037169213
-
Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection
-
Delwart E, Magierowska M, Royz M, Foley B, Peddada L, Smith R, et al. Homogeneous quasispecies in 16 out of 17 individuals during very early HIV-1 primary infection. AIDS 2002; 16:189-195.
-
(2002)
AIDS
, vol.16
, pp. 189-195
-
-
Delwart, E.1
Magierowska, M.2
Royz, M.3
Foley, B.4
Peddada, L.5
Smith, R.6
-
3
-
-
0030031568
-
Distinct but related human immunodeficiency virus type 1 variant populations in genital secretions and blood
-
Overbaugh J, Anderson RJ, Ndinya-Achola JO, Kreiss JK. Distinct but related human immunodeficiency virus type 1 variant populations in genital secretions and blood. AIDS Res Hum Retroviruses 1996; 12:107-115.
-
(1996)
AIDS Res Hum Retroviruses
, vol.12
, pp. 107-115
-
-
Overbaugh, J.1
Anderson, R.J.2
Ndinya-Achola, J.O.3
Kreiss, J.K.4
-
4
-
-
0242331608
-
HIV-1 in genital tract and plasma of women: Compartmentalization of viral sequences, coreceptor usage, and glycosylation
-
Kemal KS, Foley B, Burger H, Anastos K, Minkoff H, Kitchen C, et al. HIV-1 in genital tract and plasma of women: compartmentalization of viral sequences, coreceptor usage, and glycosylation. Proc Natl Acad Sci U S A 2003; 100:12972-12977.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12972-12977
-
-
Kemal, K.S.1
Foley, B.2
Burger, H.3
Anastos, K.4
Minkoff, H.5
Kitchen, C.6
-
5
-
-
10644234595
-
Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: Compartmentalization and intrapatient recombination
-
Philpott S, Burger H, Tsoukas C, Foley B, Anastos K, Kitchen C, Weiser B. Human immunodeficiency virus type 1 genomic RNA sequences in the female genital tract and blood: compartmentalization and intrapatient recombination. J Virol 2005; 79:353-363.
-
(2005)
J Virol
, vol.79
, pp. 353-363
-
-
Philpott, S.1
Burger, H.2
Tsoukas, C.3
Foley, B.4
Anastos, K.5
Kitchen, C.6
Weiser, B.7
-
6
-
-
0027229245
-
Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection
-
Zhang LQ, MacKenzie P, Cleland A, Holmes EC, Brown AJ, Simmonds P. Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection. J Virol 1993; 67:3345-3356.
-
(1993)
J Virol
, vol.67
, pp. 3345-3356
-
-
Zhang, L.Q.1
MacKenzie, P.2
Cleland, A.3
Holmes, E.C.4
Brown, A.J.5
Simmonds, P.6
-
7
-
-
0027422278
-
Genotypic and phenotypic characterization of HIV-1 patients with primary infection
-
Zhu T, Mo H, Wang N, Nam DS, Cao Y, Koup RA, Ho DD. Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 1993; 261:1179-1181.
-
(1993)
Science
, vol.261
, pp. 1179-1181
-
-
Zhu, T.1
Mo, H.2
Wang, N.3
Nam, D.S.4
Cao, Y.5
Koup, R.A.6
Ho, D.D.7
-
8
-
-
0036720436
-
Compartmentalization of surface envelope glycoprotein of human immunodeficiency virus type 1 during acute and chronic infection
-
Zhang L, Rowe L, He T, Chung C, Yu J, Yu W, et al. Compartmentalization of surface envelope glycoprotein of human immunodeficiency virus type 1 during acute and chronic infection. J Virol 2002; 76:9465-9473.
-
(2002)
J Virol
, vol.76
, pp. 9465-9473
-
-
Zhang, L.1
Rowe, L.2
He, T.3
Chung, C.4
Yu, J.5
Yu, W.6
-
9
-
-
12144289425
-
Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission
-
Derdeyn CA, Decker JM, Bibollet-Ruche F, Mokili JL, Muldoon M, Denham SA, et al. Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science 2004; 303:2019-2022.
-
(2004)
Science
, vol.303
, pp. 2019-2022
-
-
Derdeyn, C.A.1
Decker, J.M.2
Bibollet-Ruche, F.3
Mokili, J.L.4
Muldoon, M.5
Denham, S.A.6
-
10
-
-
0028783755
-
Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1
-
Poss M, Martin HL, Kreiss JK, Granville L, Chohan B, Nyange P, et al. Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1. J Virol 1996; 69:8118-8122.
-
(1996)
J Virol
, vol.69
, pp. 8118-8122
-
-
Poss, M.1
Martin, H.L.2
Kreiss, J.K.3
Granville, L.4
Chohan, B.5
Nyange, P.6
-
11
-
-
0033805754
-
Interactions between Herpes simplex virus type 2 and HIV-1 infection in African women: Opportunities for intervention
-
Mbopi Keou F-X, Gresenguet G, Mayaud P, Weiss HA, Gopal R, Matta M, et al. Interactions between Herpes simplex virus type 2 and HIV-1 infection in African women: opportunities for intervention. J Infect Dis 2000; 182:1090-1096.
-
(2000)
J Infect Dis
, vol.182
, pp. 1090-1096
-
-
Mbopi Keou, F.-X.1
Gresenguet, G.2
Mayaud, P.3
Weiss, H.A.4
Gopal, R.5
Matta, M.6
-
12
-
-
0028835905
-
Dilution assessment of cervicovaginal secretions obtained by vaginal washing for immunological assays
-
Belec L, Meillet D, Levy M, Georges A, Tevi-Benissan C, Pillot J. Dilution assessment of cervicovaginal secretions obtained by vaginal washing for immunological assays. Clin Diagn Lab Immunol 1995; 2:57-61.
-
(1995)
Clin Diagn Lab Immunol
, vol.2
, pp. 57-61
-
-
Belec, L.1
Meillet, D.2
Levy, M.3
Georges, A.4
Tevi-Benissan, C.5
Pillot, J.6
-
13
-
-
0033914449
-
Selection of drug-resistant variants in the female genital tract of human immunodeficiency virus type 1-infected women receiving antiretroviral therapy
-
Si-Mohamed A, Kazatchkine MD, Heard I, Goujon C, Prazuck T, Aymard G, et al. Selection of drug-resistant variants in the female genital tract of human immunodeficiency virus type 1-infected women receiving antiretroviral therapy. J Infect Dis 2000; 182:112-122.
-
(2000)
J Infect Dis
, vol.182
, pp. 112-122
-
-
Si-Mohamed, A.1
Kazatchkine, M.D.2
Heard, I.3
Goujon, C.4
Prazuck, T.5
Aymard, G.6
-
14
-
-
0035853420
-
Polymerase chain reaction for Y chromosome to detect semen in cervicovaginal fluid: A prerequisite to assess HIV-specific vaginal immunity and HIV genital shedding
-
Chomont N, Gresenguet G, Hocini H, Becquart P, Matta M, Andreoletti L, et al. Polymerase chain reaction for Y chromosome to detect semen in cervicovaginal fluid: a prerequisite to assess HIV-specific vaginal immunity and HIV genital shedding. AIDS 2001; 15:801-802.
-
(2001)
AIDS
, vol.15
, pp. 801-802
-
-
Chomont, N.1
Gresenguet, G.2
Hocini, H.3
Becquart, P.4
Matta, M.5
Andreoletti, L.6
-
15
-
-
0032484908
-
An African HIV-1 sequence from 1959 and implications for the origin of the epidemic
-
Zhu T, Korber BT, Nahmias AJ, Hooper E, Sharp PM, Ho DD. An African HIV-1 sequence from 1959 and implications for the origin of the epidemic. Nature 1998; 391:594-597.
-
(1998)
Nature
, vol.391
, pp. 594-597
-
-
Zhu, T.1
Korber, B.T.2
Nahmias, A.J.3
Hooper, E.4
Sharp, P.M.5
Ho, D.D.6
-
16
-
-
0035139698
-
Assessment of antibody assays for identifying and distinguishing recent from long-term HIV type 1 infection
-
Parekh BS, Pau CP, Kennedy MS, Dobbs TL, McDougal JS. Assessment of antibody assays for identifying and distinguishing recent from long-term HIV type 1 infection. AIDS Res Hum Retroviruses 2001; 17:137-146.
-
(2001)
AIDS Res Hum Retroviruses
, vol.17
, pp. 137-146
-
-
Parekh, B.S.1
Pau, C.P.2
Kennedy, M.S.3
Dobbs, T.L.4
McDougal, J.S.5
-
17
-
-
0035132181
-
Antibody avidity: Use for the diagnosis of HIV early infection
-
Le Guillou H, Le Meur A, Bourdon S, Riou M, Loison J, Fialaire P, et al. Antibody avidity: use for the diagnosis of HIV early infection. Ann Biol Clin (Paris) 2001; 59:41-47.
-
(2001)
Ann Biol Clin (Paris)
, vol.59
, pp. 41-47
-
-
Le Guillou, H.1
Le Meur, A.2
Bourdon, S.3
Riou, M.4
Loison, J.5
Fialaire, P.6
-
18
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
19
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
Felsenstein J. Phylogenies from molecular sequences: inference and reliability. Annu Rev Genet 1988; 22:521-565.
-
(1988)
Annu Rev Genet
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
20
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
21
-
-
0036138443
-
Reconstitution of spontaneous neutralizing antibody response against autologous human immunodeficiency virus during highly active antiretroviral therapy
-
Kimura T, Yoshimura K, Nishihara K, Maeda Y, Matsumi S, Koito A, Matsushita S. Reconstitution of spontaneous neutralizing antibody response against autologous human immunodeficiency virus during highly active antiretroviral therapy. J Infect Dis 2002; 185:53-60.
-
(2002)
J Infect Dis
, vol.185
, pp. 53-60
-
-
Kimura, T.1
Yoshimura, K.2
Nishihara, K.3
Maeda, Y.4
Matsumi, S.5
Koito, A.6
Matsushita, S.7
-
22
-
-
0024341852
-
A cladistic measure of gene flow inferred from the phylogenies of alleles
-
Slatkin M, Maddison WP. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 1989; 123:603-613.
-
(1989)
Genetics
, vol.123
, pp. 603-613
-
-
Slatkin, M.1
Maddison, W.P.2
-
23
-
-
0031694637
-
-
Poss M, Rodrigo AG, Gosink JJ, Learn GH, de Vange Panteleeff D, Martin HL Jr, et al. Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1. J Virol 1998; 72:8240-8251.
-
Poss M, Rodrigo AG, Gosink JJ, Learn GH, de Vange Panteleeff D, Martin HL Jr, et al. Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type 1. J Virol 1998; 72:8240-8251.
-
-
-
-
25
-
-
33845961174
-
-
Swofford DL. PAUP: Phylogenetic Analysis using Parsimony, version 3.1.1. Illinois Natural History Survey, Champaign. 1993
-
Swofford DL. PAUP: Phylogenetic Analysis using Parsimony, version 3.1.1. Illinois Natural History Survey, Champaign. 1993.
-
-
-
-
26
-
-
0036382905
-
Compartmentalization of HIV-1 between breast milk and blood of HIV-infected mothers
-
Becquart P, Chomont N, Roques P, Ayouba A, Kazatchkine MD, Belec L, Hocini H. Compartmentalization of HIV-1 between breast milk and blood of HIV-infected mothers. Virology 2002; 300:109-117.
-
(2002)
Virology
, vol.300
, pp. 109-117
-
-
Becquart, P.1
Chomont, N.2
Roques, P.3
Ayouba, A.4
Kazatchkine, M.D.5
Belec, L.6
Hocini, H.7
-
27
-
-
0035884899
-
Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks
-
Resch W, Hoffman N, Swanstrom R. Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks. Virology 2001; 288:51-62.
-
(2001)
Virology
, vol.288
, pp. 51-62
-
-
Resch, W.1
Hoffman, N.2
Swanstrom, R.3
-
28
-
-
0026606727
-
Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule
-
Fouchier RA, Groenink M, Kootstra NA, Tersmette M, Huisman HG, Miedema F, Schuitemaker H. Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J Virol 1992; 66:3183-3187.
-
(1992)
J Virol
, vol.66
, pp. 3183-3187
-
-
Fouchier, R.A.1
Groenink, M.2
Kootstra, N.A.3
Tersmette, M.4
Huisman, H.G.5
Miedema, F.6
Schuitemaker, H.7
-
29
-
-
0028950499
-
Simple determination of human immunodeficiency virus type 1 syncytium-inducing V3 genotype by PCR
-
Fouchier RA, Brouwer M, Broersen SM, Schuitemaker H. Simple determination of human immunodeficiency virus type 1 syncytium-inducing V3 genotype by PCR. J Clin Microbiol 1995; 33:906-911.
-
(1995)
J Clin Microbiol
, vol.33
, pp. 906-911
-
-
Fouchier, R.A.1
Brouwer, M.2
Broersen, S.M.3
Schuitemaker, H.4
-
30
-
-
0033978489
-
Gender differences in HIV-1 diversity at time of infection [see comments]
-
Long EM, Martin HL Jr, Kreiss JK, Rainwater SM, Lavreys L, Jackson DJ, et al. Gender differences in HIV-1 diversity at time of infection [see comments]. Nat Med 2000; 6:71-75.
-
(2000)
Nat Med
, vol.6
, pp. 71-75
-
-
Long, E.M.1
Martin Jr, H.L.2
Kreiss, J.K.3
Rainwater, S.M.4
Lavreys, L.5
Jackson, D.J.6
-
31
-
-
0031555638
-
Primary infections with HIV-1 of women and their offspring in Rwanda: Findings of heterogeneity at seroconversion, coinfection, and recombinants of HIV-1 subtypes A and C
-
Kampinga GA, Simonon A, Van de Perre P, Karita E, Msellati P, Goudsmit J. Primary infections with HIV-1 of women and their offspring in Rwanda: findings of heterogeneity at seroconversion, coinfection, and recombinants of HIV-1 subtypes A and C. Virology 1997; 227:63-76.
-
(1997)
Virology
, vol.227
, pp. 63-76
-
-
Kampinga, G.A.1
Simonon, A.2
Van de Perre, P.3
Karita, E.4
Msellati, P.5
Goudsmit, J.6
-
32
-
-
0032928773
-
Detection and quantification of HIV-1 in semen: Identification of a subpopulation of men at high potential risk of viral sexual transmission
-
Tachet A, Dulioust E, Salmon D, De Almeida M, Rivalland S, Finkielsztejn L, et al. Detection and quantification of HIV-1 in semen: identification of a subpopulation of men at high potential risk of viral sexual transmission. AIDS 1999; 13:823-831.
-
(1999)
AIDS
, vol.13
, pp. 823-831
-
-
Tachet, A.1
Dulioust, E.2
Salmon, D.3
De Almeida, M.4
Rivalland, S.5
Finkielsztejn, L.6
-
33
-
-
0026476474
-
Relationship of human immunodeficiency virus type 1 sequence heterogeneity to stage of disease
-
McNearney T, Hornickova Z, Markham R, Birdwell A, Arens M, Saah A, Ratner L. Relationship of human immunodeficiency virus type 1 sequence heterogeneity to stage of disease. Proc Natl Acad Sci U S A 1992; 89:10247-10251.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 10247-10251
-
-
McNearney, T.1
Hornickova, Z.2
Markham, R.3
Birdwell, A.4
Arens, M.5
Saah, A.6
Ratner, L.7
-
34
-
-
0033509562
-
Analysis of HIV-1 in the cervicovaginal secretions and blood of pregnant and nonpregnant women
-
Shaheen F, Sison AV, McIntosh L, Mukhtar M, Pomerantz RJ. Analysis of HIV-1 in the cervicovaginal secretions and blood of pregnant and nonpregnant women. J Hum Virol 1999; 2:154-166.
-
(1999)
J Hum Virol
, vol.2
, pp. 154-166
-
-
Shaheen, F.1
Sison, A.V.2
McIntosh, L.3
Mukhtar, M.4
Pomerantz, R.J.5
-
35
-
-
0032818767
-
Compartmentalization of the IgG immune response to HIV-1 in breast milk
-
Becquart P, Hocini H, Garin B, Sepou A, Kazatchkine MD, Bélec L. Compartmentalization of the IgG immune response to HIV-1 in breast milk. AIDS 1999; 13:1323-1331.
-
(1999)
AIDS
, vol.13
, pp. 1323-1331
-
-
Becquart, P.1
Hocini, H.2
Garin, B.3
Sepou, A.4
Kazatchkine, M.D.5
Bélec, L.6
-
36
-
-
21644455405
-
Propagation and dissemination of infection after vaginal transmission of simian immunodeficiency virus
-
Miller CJ, Li Q, Abel K, Kim EY, Ma ZM, Wietgrefe S, et al. Propagation and dissemination of infection after vaginal transmission of simian immunodeficiency virus. J Virol 2005; 79:9217-9227.
-
(2005)
J Virol
, vol.79
, pp. 9217-9227
-
-
Miller, C.J.1
Li, Q.2
Abel, K.3
Kim, E.Y.4
Ma, Z.M.5
Wietgrefe, S.6
|