Primary infections with HIV-1 of women and their offspring in Rwanda: Findings of heterogeneity at seroconversion, coinfection, and recombinants of HIV-1 subtypes A and C

Virology

Volumn 227, Issue 1, 1997, Pages 63-76

  Kampinga, Greetje A ^a,d   Simonon, Arlette ^b,e   Van De Perre, Philippe ^b,e   Karita, Etienne ^b,e   Msellati, Philippe ^c   Goudsmit, Jaap ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b National AIDS Control Program Rwanda   (Rwanda)

^c Institut de Recherche pour le Developpement Abidjan   (Côte d’Ivoire)

^d UNIVERSITY OF GRONINGEN   (Netherlands)

^e CENTRE MURAZ   (Burkina Faso)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHILD; CLINICAL ARTICLE; CONTROLLED STUDY; FEMALE; GENETIC VARIABILITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; RWANDA; SEROCONVERSION; VERTICAL TRANSMISSION; VIRUS RECOMBINANT; VIRUS TRANSMISSION;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0031555638     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.8318     Document Type: Article

References (46)

1. Boom, R, Sol, C. J A., Salimans, M. M. M., Jansen, C. L., Wertheim-van Dillen, P. M. E., and van der Noordaa, J. (1990). Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28, 495-503.
2. Bulterys, M., Chao, A., Dushimimana, A., Habimana, P., Nawrocki, P., Kurawige, J.-B., Musanganire, F., and Saah, A. (1993). Multiple sexual partners and mother-to-child transmission of HIV-1. AIDS 7, 1639-1645.
3. Cichutek, K., Merget, H., Norley, S., Linde, R., Kreuz, W., Gahr, M., and Kurth, R. (1992). Development of a quasispecies of human immunodeficiency virus type 1 in vivo. Proc. Natl. Acad. Sci. USA 89, 7365-7369.
4. Cornelissen, M., Mulder-Kampinga, G., Veenstra, J., Zorgdrager, F., Kuiken, C., Hartman, S., Dekker, J., van der Hoek, L., Sol, C., Coutinho, R., and Goudsmit, J. (1995). Syncytium-inducing (SI) phenotype suppression at seroconversion after intramuscular inoculation of a non-syncytium-inducing/SI phenotypically mixed human immunodeficiency virus population. J. Virol. 69, 1810-1818.
5. Cornelissen, M., Kampinga, G., Zorgdrager, F., Goudsmit, J., and the UNAIDS network for HIV isolation and characterization. (1996). Human immunodeficiency virus type 1 subtypes defined by env show high frequency of recombinant gag genes. J. Virol. 70, 8209-8212.
6. De Jong, J. J., de Ronde, A., Keulen, W., Tersmette, M., and Goudsmit, J. (1992). Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: Analysis by single amino acid substitution. J. Virol. 66, 6777-6780.
7. De Wolf, F., Hogervorst, E., Goudsmit, J., Fenyö, E.-M., Rübsamen-Waigmann, H., Holmes, H., Galvao-Castro, B., Karita, E., Wasi, C., Sempala, S. D. K., Baan, E., Zorgdrager, F., Lukashov, V., Osmanov, S., Kuiken, C., and Cornelissen, M. (1994). Syncytium inducing and non-syncytium inducing capacity of human immunodeficiency virus type 1 subtypes other than B: Phenotypic and genotypic characteristics. AIDS Res. Hum. Retroviruses 10, 1387-1400.
8. Delwart, E. L., Shpaer, E. G., McCutchan, F. E., Louwagie, J., Grez, M., Rübsamen-Waigmann, H., and Mullins, J. I. (1993). Genetic relationships determined by a heteroduplex mobility assay: Analysis of HIV env genes. Science 262, 1257-1261.
9. Fouchier, R. A. M., Groenink, M., Kootstra, N. A., Tersmette, M., Huisman, H. G., Miedema, F., and Schuitemaker, H. (1992). Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule. J. Virol. 66, 3183-3187.
10. Ho, J. L., He, S., Hu, A., Geng, J., Basile, F. G., Almeida, M. G., Saito, A. Y., Laurence, J., and Johnson, W. D., Jr. (1995). Neutrophils from human immunodeficiency virus (HIV)-seronegative donors induce HIV replication from HIV-infected patients' mononuclear cells and cell lines: An in vitro model of HIV transmission facilitated by Chlamydia trachomatis. J. Exp. Med. 181, 1493-1505.
11. Kimura, M. (1981). Estimation of evolutionary distances between homologous nucleotide sequences. Proc. Natl. Acad. Sci. USA 78, 454-458.
12. Kreiss, J., Willerford, D. M., Hensel, M., Emonyi, W., Plummer, F., Ndinya-Achola, J., Roberts, P. L., Hoskyn, J., Hillier, S., Kiviat, N., and Holmes, K. K. (1994). Association between cervical inflammation and cervical shedding of human immunodeficiency virus DNA. J. Infect. Dis. 170, 1597-1601.
13. Kumar, S., Tamura, K., and Nei, M. (1993). Molecular evolutionary genetics analysis (MEGA), Version 1.01. Institute of Molecular Evolutionary Genetics, Pennsylvania State University, University Park.
14. Lamers, S. L., Sleasman, J. W., Xiong She, J., Barrie, K. A., Pomeroy, S. M., Barrett, D. J., and Goodenow, M. M. (1994). Persistence of multiple maternal genotypes of human immunodeficiency virus type 1 in infants infected by vertical transmission. J. Clin. Invest. 93, 380-390.
15. Leitner, T., Escanilla, D., Marquina, S., Wahlberg, J., Broström, C., Hansson, H. B., Uhlén, M., and Albert, J. (1995). Biological and molecular characterization of subtype D, G and A/D recombinant HIV-1 transmissions in Sweden. Virology 209, 136-146.
16. Lepage, P., Dabis, F., Hitimana, D.-G., Msellati, P., van Goethem, C., Stevens, A.-M., Nsengumuremyi, F., Bazubagira, A., Serufilira, A., De Clercq, A., and van de Perre, P. (1991). Perinatal transmission of HIV-1: Lack of impact of maternal HIV infection on characteristics of livebirths and on neonatal mortality in Kigali, Rwanda. AIDS 5, 295-300.
17. Leroy, V., van de Perre, P., Lepage, P., Saba, J., Nsengumuremyi, F., Simonon, A., Karita, E., Msellati, P., Salamon, R., and Dabis, F. (1994). Seroincidence of HIV-1 infection in African women of reproductive age: A prospective cohort study in Kigali, Rwanda, 1988-1992. AIDS 8, 983-986.
18. Louwagie, J., McCutchan, F. E., Peeters, M., Brennan, T. P., Sanders-Buell, E., Eddy, G. A., van der Groen, G., Fransen, K., Gershy-Damet, G.-M., Deleys, R., and Burke, D. S. (1993). Phylogenetic analysis of gag genes from 70 international HIV-1 isolates provides evidence for multiple genotypes. AIDS 7, 769-780.
19. Louwagie, J., Janssens, W., Mascola, J., Heyndrickx, L., Hegerich, P., van der Groen, G., McCutchan, F. E., and Burke, D. S. (1995). Genetic diversity of the envelope glycoprotein from human immunodeficiency virus type 1 isolates of African origin. J. Virol. 69, 263-271.
20. Lukashov, V. V., Cornelissen, M. T. E., Goudsmit, J., Papuashvilli, M. N., Rytik, P. G., Khaitov, R. M., Karamov, E. V., and de Wolf, F. (1995). Simultaneous introduction of distinct HIV-1 subtypes into different risk groups in Russia, Byelorussia and Luthuania. AIDS 9, 435-439.
21. Lukashov, V. V., Kuiken, C. L., Boer, K., and Goudsmit, J. (1996). HIV-1 subtypes in the Netherlands circulating among women originating from AIDS endemic regions. AIDS Res. Hum. Retroviruses 12, 951-953.
22. Moss, G. B., Overbaugh, J., Welch, M., Reilly, M., Bwayo, J., Plummer, F. A., Ndinya-Achola, J. O., Malisa, M. A., and Kreiss, J. K. (1995). Human immunodeficiency virus DNA in urethral secretions in men: Association with gonococcal urethritis and CD4 cell depletion. J. Infect. Dis. 171, 1469-1474.
23. Mulder-Kampinga, G. A., Kuiken, C., Dekker, J., Scherpbier, H. J., Boer, K., and Goudsmit, J. (1993). Genomic human immunodeficiency virus type 1 RNA variation in mother and child following intra-uterine virus transmission. J. Gen. Virol. 74, 1747-1756.
24. Mulder-Kampinga, G. A., Simonon, A., Kuiken, C. L., Dekker, J., Scherpbier, H. J., van de Perre, P., Boer, K., and Goudsmit, J. (1995). Similarity in env and gag genes between genomic RNAs of human immunodeficiency virus type 1 (HIV-1) from mother and infant is unrelated to the time of HIV-1 RNA positivity in the child. J. Virol. 69, 2285-2296.
25. Myers, G., Korber, B., Berzofsky, J. A., Smith, R. F., and Pavlakis, G. N. (1990). Human retroviruses and AIDS. In "Theoretical Biology and Biophysics." Los Alamos National Laboratory, Los Alamos, NM.
26. Myers, G., Korber, B., Wain-Hobson, S., Jeang, K.-T., Henderson, L. E., and Pavlakis, G. N. (1994). Human retroviruses and AIDS. In "Theoretical Biology and Biophysics." Los Alamos National Laboratory, Los Alamos, NM.
27. Ou, C.-Y., Kwok, S., Mitchell, S. W., Mack, D. H., Sninsky, J. J., Krebs, J. W., Feorino, P., Warfield, D., and Schochetman, G. (1988). DNA amplification for direct detection of HIV-1 in DNA of peripheral blood mononuclear cells. Science 239, 295-297.
28. Pang, S., Shlesinger, Y., Daar, E. S., Moudgil, T., Ho, D. D., and Chen, I. S. Y. (1992). Rapid generation of sequence variation during primary HIV-1 infection. AIDS 6, 453-460.
29. Poss, M., Martin, H. L., Kreiss, J. K., Granville, L., Chohan, B., Nyange, P., Mandaliya, K., and Overbaugh, J. (1995). Diversity in virus populations from genital secretions and peripheral blood from women recently infected with human immunodeficiency virus type 1. J. Virol. 69, 8118-8122.
30. Robertson, D. L., Hahn, B. H., and Sharp, P. M. (1995). Recombination in AIDS viruses. J. Mol. Evol. 40, 249-259.
31. Sabino, E. C., Shpaer, E. G., Morgado, M. G., Korber, B. T. M., Diaz, R. S., Bongertz, V., Cavalcante, S., Galvao-Castro, B., Mullins, J. I., and Mayer, A. (1994). Identification of human immunodeficiency virus type 1 envelope genes recombinant between subtypes B and F in two epidemiologically linked individuals from Brazil. J. Virol. 68, 6340-6346.
32. Saitou, N., and Nei, M. (1987). The neighbor-joining method: A new method for constructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
33. Scarlatti, G., Leitner, T., Halapi, E., Wahlberg, J., Marchisio, P., Clerici-Schoeller, M. A., Wigzell, H., Fenyö, E.-M., Albert, J., Uhlén, M., and Rossi, P. (1993). Comparison of variable region 3 sequences of human immunodeficiency virus type 1 from infected children with the RNA and DNA sequences of the virus populations of their mothers. Proc. Natl. Acad. Sci. USA 90, 1721-1725.
34. Simonon, A., Lepage, P., Karita, E., Hitimana, D.-G., Dabis, F., Msellati, P., van Goethem, C., Nsengumuremyi, F., Bazubagira, A., and van de Perre, P. (1994). An assessment of the timing of mother-to-child transmission of human immunodeficiency virus type 1 by means of polymerase chain reaction. J. AIDS 7, 952-957.
35. Soto-Ramirez, L. E., Renjifo, B., McLane, M. F., Marlink, R., O'Hara, C., Sutthent, R., Wasi, C., Vithayasai, P., Vithayasai, V., Apichartpiyakul, C., Auewarakul, P., Peña Cruz, V., Chui, D.-S., Osathanondh, R., Mayer, K., Lee, T.-H., and Essex, M. (1996). HIV-1 Langerhans' cell tropism associated with heterosexual transmission of HIV. Science 271, 1291-1293.
36. Spira, A. I., Marx, P. A., Patterson, B. K., Mahoney, J., Koup, R. A., Wolinsky, S. M., and Ho, D.D. (1996). Cellular targets of infection and route of viral dissemination after an intravaginal inoculation of simian immunodeficiency virus into rhesus macaques. J. Exp. Med. 183, 215-225.
37. Van de Perre, P., Simonon, A., Msellati, P., Hitimana, D.-G., Vaira, D., Bazubagira, A., van Goethem, C., Stevens, A.-M., Karita, E., Sondag-Thull, D., Dabis, F., and Lepage, P. (1991). Postnatal transmission of human immunodeficiency virus type 1 from mother to infant. N. Engl. J. Med. 325, 593-598.
38. Van de Perre, P., Hitimana, D.-G., Simonon, A., Dabis, F., Msellati, P., Karita, E., and Lepage, P. (1992). Postnatal transmission of HIV-1 associated with breast abscess. Lancet 339, 1490-1491.
39. Van 't Wout, A. B., Kootstra, N. A., Mulder-Kampinga, G. A., Albrechtvan Lent, N., Scherpbier, H. J., Veenstra, J., Boer, K., Coutinho, R. A., Miedema, F., and Schuitemaker, H. (1994). Macrophage-tropic variants initiate human immunodeficiency virus type 1 infection after sexual, parenteral and vertical transmission. J. Clin. Invest. 94, 2060-2067.
40. WHO Network for HIV Isolation and Characterization. (1994). HIV type 1 variation in World Health Organization-sponsored vaccine evaluation sites: Genetic screening, sequence analysis, and preliminary biological characterization of selected viral strains. AIDS Res. Hum. Retroviruses 11, 1327-1343.
41. Wolfs, T. F. W., Zwart, G., Bakker, M., Valk, M., Kuiken, C. L., and Goudsmit, J. (1991). Naturally occurring mutations within HIV-1 V3 genomic RNA lead to antigenic variation dependent on a single amino acid substitution. Virology 185, 195-205.
42. Wolfs, T. F. W., Zwart, G., Bakker, M., and Goudsmit, J. (1992). HIV-1 genomic RNA diversification following sexual and parental virus transmission. Virology 189, 103-110.
43. Wolinsky, S. M., Wike, C. M., Korber, B. T. M., Hutto, C., Parks, W. P., Rosenblum, L. L., Kunstman, K. J., Furtado, M. R., and Muñoz, J. L. (1992). Selective transmission of human immunodeficiency virus type-1 variants from mothers to infants. Science 255, 1134-1137.
44. Zhang, L. Q., MacKenzie, P., Cleland, A., Holmes, E. C., Leigh Brown, A. J., and Simmonds, P. (1993). Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection. J. Virol. 67, 3345-3356.
45. Zhu, T., Mo, H., Wang, N., Nam, D. S., Cao, Y., Koup, R. A., and Ho, D. D. (1993). Genotypic and phenotypic characterization of HIV-1 in patients with primary infection. Science 261, 1179-1181.
46. Zhu, T., Wang, N., Carr, A., Nam, D.S., Moor-Jankowski, R., Cooper, D. A., and Ho, D. D. (1996). Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: Evidence for compartmentalization and selection during sexual transmission. J. Virol. 70, 3098-3107.