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Volumn 2006, Issue , 2006, Pages 229-240

Exploring I/O strategies for parallel sequence-search tools with S3aSim

Author keywords

[No Author keywords available]

Indexed keywords

CUSTOMIZED COMPUTATIONAL HARDWARE; DATABASE SEGMENTATION;

EID: 33845901845     PISSN: 10828907     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (14)

References (24)
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    • BLAT - The BLAST-like alignment tool
    • W. Kent. BLAT - the BLAST-like alignment tool. Genome Research, 12(4), 2002.
    • (2002) Genome Research , vol.12 , Issue.4
    • Kent, W.1
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    • C. Ltd.
    • C. Ltd. Bioccerator. http://eta.embl-heidelberg.de:8000/, 1994.
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    • 0036202921 scopus 로고    scopus 로고
    • PatternHunter: Faster and more sensitive homology search
    • L. M. Ma B, Tromp J. PatternHunter: faster and more sensitive homology search. Bioinformatics, 18(3):440-445, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.3 , pp. 440-445
    • Ma, L.M.B.1    Tromp, J.2
  • 17
    • 0141506106 scopus 로고    scopus 로고
    • Parallel BLAST on split databases
    • D. R. Mathog. Parallel BLAST on split databases. Bioinfomatics, 19:1865-1866, 2003.
    • (2003) Bioinfomatics , vol.19 , pp. 1865-1866
    • Mathog, D.R.1
  • 18
    • 0005787195 scopus 로고    scopus 로고
    • NCBI. Growth of genbank. http://www.ncbi.nlm.nih.gov/Genbank/ genbankstats.html.
    • Growth of Genbank
  • 19
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • M. J. Ning Z, Cox AJ. SSAHA: A Fast Search Method for Large DNA Databases. Genome Res., 11(10):1725-1729, 2001.
    • (2001) Genome Res. , vol.11 , Issue.10 , pp. 1725-1729
    • Ning, M.J.Z.1    Cox, A.J.2
  • 20
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    • Computational applications for life sciences on sun platforms: Performance overview
    • I. Sharapov. Computational applications for life sciences on sun platforms: Performance overview. Whitepaper, 2001.
    • (2001) Whitepaper
    • Sharapov, I.1
  • 22
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    • The parallel virtual file system 2 (PVFS2). http://www.pvfs.org/pvfs2/.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.