Parallel BLAST on split databases

Bioinformatics

Volumn 19, Issue 14, 2003, Pages 1865-1866

  Mathog, David R ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; COMPUTER ANALYSIS; COMPUTER MEMORY; COMPUTER PROGRAM; COMPUTER SYSTEM; DATA BASE; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; MACHINE; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DATABASE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE;

EID: 0141506106     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg250     Document Type: Article

References (4)

1. Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
3. Grant,J.D., Dunbrack,R.L., Manion,F.J. and Ochs,M.F. (2002) Beo-Blast: distributed BLAST and PSI-BLAST on a Beowulf cluster, Bioinformatics, 18, 765-766.
4. Marchler-Bauer,A., Panchenko,A.R., Shoemaker,B.A., Thiessen,P.A., Geer,L.Y. and Bryant,S.H. (2002) CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res., 30, 281-283.