TurboBLAST®: A parallel implementation of blast built on the turbohub

Proceedings - International Parallel and Distributed Processing Symposium, IPDPS 2002

Volumn , Issue , 2002, Pages 183-190

  Bjornson, R D ^a   Sherman, A H ^a   Weston, S B ^a   Willard, N ^a   Wing, J ^a  

^a TurboGenomics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84966565294     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IPDPS.2002.1016583     Document Type: Conference Paper

References (15)

1. Altschul, S.F. & Gish, W., "Local alignment statistics." Meth. Enzymol. 266:460-480 (1996).
2. Altschul, S.F., et al., "Basic local alignment search tool." J. Mol. Biol. 215:403-410 (1990).
3. Altschul, S.F., et al., "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs." Nucleic Acids Res. 25:3389-3402 (1997).
4. Baxevanis, A.D. and Ouellette, B.F., eds., Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Wiley-Interscience (1998).
5. Braun, R.C., et al., in Future Generation Computer Systems 17:745-754 (2001).
6. Camp, N. "High Throughput BLAST." Technical Report, Silicon Graphics, Inc. (1998).
7. Durbin, R. et al., Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press (1998).
8. Kaminsky, D., Adaptive Parallelism with Piranha, Ph.D. Dissertation, Yale University, 1994.
9. Karlin, S. & Altschul, S.F., "Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes." Proc. Natl. Acad. Sci. USA 87:2264-2268 (1990).
10. Karlin, S. & Altschul, S.F., "Applications and statistics for multiple high-scoring segments in molecular sequences." Proc. Natl. Acad. Sci. USA 90:5873-5877 (1993).
11. Lipman, D.J. and Pearson, W.R., "Rapid and sensitive protein similarity searches," Science 227:1435-1441 (1985).
12. Pearson, W.R. and Lipman, D.J., "Improved tools for biological sequence comparison," Proc. Natl. Acad. Sci., Vol. 85:2444-2448 (1988).
13. Pedretti, K.T., et al., in Lecture Notes in Computer Science, 1662:271-282 (1999).
14. Scientific Computing Associates, Inc., Paradise User's Guide & Reference Manual (Version 4.0). New Haven, CT, 1996.
15. TurboGenomics, Inc., TurboBLAST User's Guide (Version 1.1). New Haven, CT, 2001.