메뉴 건너뛰기




Volumn 64, Issue 1, 2007, Pages 50-60

Evaluating neanderthal genetics and phylogeny

Author keywords

Ancient DNA; Bayesian inference; DNA damage; Human evolution; Neanderthal DNA; PCR artifacts

Indexed keywords

MITOCHONDRIAL DNA;

EID: 33845900965     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-006-0017-y     Document Type: Article
Times cited : (14)

References (70)
  • 2
    • 1342309210 scopus 로고    scopus 로고
    • Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
    • Altekar G, Dwarkadas S, Huelsenbeck JP, Ronquist F (2004) Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20:407-415
    • (2004) Bioinformatics , vol.20 , pp. 407-415
    • Altekar, G.1    Dwarkadas, S.2    Huelsenbeck, J.P.3    Ronquist, F.4
  • 7
    • 0000507992 scopus 로고    scopus 로고
    • Mitochondrial DNA analysis and the place of Neanderthals in Homo
    • Caldararo N, Gabow S (2000) Mitochondrial DNA analysis and the place of Neanderthals in Homo. Ancient Biomol 3:135-158
    • (2000) Ancient Biomol , vol.3 , pp. 135-158
    • Caldararo, N.1    Gabow, S.2
  • 8
    • 0028975575 scopus 로고
    • Revival and identification of bacterial spores in 25- to 40-million year-old Dominican amber
    • Cano RJ, Borucki MK (1995) Revival and identification of bacterial spores in 25- to 40-million year-old Dominican amber. Science 268:1060-1064
    • (1995) Science , vol.268 , pp. 1060-1064
    • Cano, R.J.1    Borucki, M.K.2
  • 10
    • 0033613646 scopus 로고    scopus 로고
    • Predicting protein decomposition: The case of aspartic-acid racemization kinetics
    • Collins MJ, Waite ER, van Duin ACT (1999) Predicting protein decomposition: the case of aspartic-acid racemization kinetics. Philos Trans Roy Soc Lond B 354:51-64
    • (1999) Philos Trans Roy Soc Lond B , vol.354 , pp. 51-64
    • Collins, M.J.1    Waite, E.R.2    van Duin, A.C.T.3
  • 11
    • 0034682945 scopus 로고    scopus 로고
    • Ancient DNA: Do it right or not at all
    • Cooper A, Poinar HN (2001) Ancient DNA: do it right or not at all. Science 18:1139
    • (2001) Science , vol.18 , pp. 1139
    • Cooper, A.1    Poinar, H.N.2
  • 13
    • 14044258418 scopus 로고    scopus 로고
    • Modern humans did not admix with Neanderthals during their range expansion into Europe
    • Currat M, Excoffier L (2004) Modern humans did not admix with Neanderthals during their range expansion into Europe. PLoS Biol 2:2264-2274
    • (2004) PLoS Biol , vol.2 , pp. 2264-2274
    • Currat, M.1    Excoffier, L.2
  • 15
    • 22744433702 scopus 로고    scopus 로고
    • Biogeography and evolution of the genus Homo
    • Finlayson C (2005) Biogeography and evolution of the genus Homo. TREE 20:457-463
    • (2005) TREE , vol.20 , pp. 457-463
    • Finlayson, C.1
  • 16
    • 0037161664 scopus 로고    scopus 로고
    • Recovery of 16S ribosomal RNA gene fragments from ancient halite
    • Fish SA, Shepherd TJ, McGenity TJ, Grant WD (2002) Recovery of 16S ribosomal RNA gene fragments from ancient halite. Nature 417:432-436
    • (2002) Nature , vol.417 , pp. 432-436
    • Fish, S.A.1    Shepherd, T.J.2    McGenity, T.J.3    Grant, W.D.4
  • 21
    • 20444379640 scopus 로고    scopus 로고
    • Post mortem DNA damage hotspots in Bison (Bison bison and B. bonasus) provide supporting evidence for mutational hotspots in human mitochondria
    • Gilbert MTP, Shapiro B, Drummond A, Cooper A (2005b) Post mortem DNA damage hotspots in Bison (Bison bison and B. bonasus) provide supporting evidence for mutational hotspots in human mitochondria. J Arch Sci 32:1053-1060
    • (2005) J Arch Sci , vol.32 , pp. 1053-1060
    • Gilbert, M.T.P.1    Shapiro, B.2    Drummond, A.3    Cooper, A.4
  • 23
    • 33646167599 scopus 로고    scopus 로고
    • Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA
    • Gilbert MTP, Hansen AJ, Willerslev E, Turner-Walker G, Collins M (2006) Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA. Int J Osteoarch 16:156-164
    • (2006) Int J Osteoarch , vol.16 , pp. 156-164
    • Gilbert, M.T.P.1    Hansen, A.J.2    Willerslev, E.3    Turner-Walker, G.4    Collins, M.5
  • 24
    • 0036667697 scopus 로고    scopus 로고
    • A reanalysis of the ancient mitochondrial DNA sequences recovered from Neanderthal bones
    • Gutiérrez G, Sánchez D, Marín A (2002) A reanalysis of the ancient mitochondrial DNA sequences recovered from Neanderthal bones. Mol Biol Evol 19:1359-1366
    • (2002) Mol Biol Evol , vol.19 , pp. 1359-1366
    • Gutiérrez, G.1    Sánchez, D.2    Marín, A.3
  • 26
    • 0031831298 scopus 로고    scopus 로고
    • Compilation of human mtDNA control region sequences
    • Handt O, Meyer S, von Haeseler A (1998) Compilation of human mtDNA control region sequences. Nucleic Acids Res 26:126-129
    • (1998) Nucleic Acids Res , vol.26 , pp. 126-129
    • Handt, O.1    Meyer, S.2    von Haeseler, A.3
  • 28
    • 33745358864 scopus 로고    scopus 로고
    • Hansen AJ, Mitchell DL, Wiuf C, Paniker L, Brand TB, Binladen J, Gilichinsky DA, Rønn R, Willerslev E (2006) Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments. Available at: 10.1534/genetics.106.057349; accessed April 2, 2006
    • Hansen AJ, Mitchell DL, Wiuf C, Paniker L, Brand TB, Binladen J, Gilichinsky DA, Rønn R, Willerslev E (2006) Crosslinks rather than strand breaks determine access to ancient DNA sequences from frozen sediments. Available at: 10.1534/genetics.106.057349; accessed April 2, 2006
  • 29
    • 0037226157 scopus 로고    scopus 로고
    • The Neanderthal taxonomic positions: Models of intra- and inter-specific craniofacial variation
    • Harvati K (2003) The Neanderthal taxonomic positions: models of intra- and inter-specific craniofacial variation. J Hum Evol 44:107-132
    • (2003) J Hum Evol , vol.44 , pp. 107-132
    • Harvati, K.1
  • 32
    • 0035581087 scopus 로고    scopus 로고
    • DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
    • Hofreiter M, Jaenicke V, Serre D, von Haeseler A , Pääbo S (2001b) DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res 29:4793-47799
    • (2001) Nucleic Acids Res , vol.29 , pp. 4793-47799
    • Hofreiter, M.1    Jaenicke, V.2    Serre, D.3    von Haeseler, A.4    Pääbo, S.5
  • 33
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Huelsenbeck JP, Ronquist F (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 34
    • 0036806280 scopus 로고    scopus 로고
    • Potential applications and pitfalls of Bayesian inference of phylogeny
    • Huelsenbeck JP, Larget B, Miller RE, Ronquist F (2002) Potential applications and pitfalls of Bayesian inference of phylogeny. Syst Biol 51:673-688
    • (2002) Syst Biol , vol.51 , pp. 673-688
    • Huelsenbeck, J.P.1    Larget, B.2    Miller, R.E.3    Ronquist, F.4
  • 35
    • 4544243387 scopus 로고    scopus 로고
    • DNA sequences from Miocene fossils: An ndhF sequence of Magnolia latahensis (Magnoliaceae) and an rbcL sequence of Persea pseudocarolinensis (Lauraceae)
    • Kim S, Soltis DE, Soltis PS, Suh Y (2004) DNA sequences from Miocene fossils: an ndhF sequence of Magnolia latahensis (Magnoliaceae) and an rbcL sequence of Persea pseudocarolinensis (Lauraceae). Am J Bot 91:615-620
    • (2004) Am J Bot , vol.91 , pp. 615-620
    • Kim, S.1    Soltis, D.E.2    Soltis, P.S.3    Suh, Y.4
  • 36
    • 0038606751 scopus 로고    scopus 로고
    • The phylogenetic relationship of Neanderthal and modern human mitochondrial DNAs based on informative nucleotide sites
    • Knight A (2003) The phylogenetic relationship of Neanderthal and modern human mitochondrial DNAs based on informative nucleotide sites. J Hum Evol 44:627-632
    • (2003) J Hum Evol , vol.44 , pp. 627-632
    • Knight, A.1
  • 38
    • 0033545971 scopus 로고    scopus 로고
    • DNA sequence of the mitochondrial hypervariable region II from the Neanderthal type specimen
    • Krings M, Geisert H, Schmitz RW, Krainitzki H, Pääbo S (1999) DNA sequence of the mitochondrial hypervariable region II from the Neanderthal type specimen. Proc Natl Acad Sci USA 96:5581-5585
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 5581-5585
    • Krings, M.1    Geisert, H.2    Schmitz, R.W.3    Krainitzki, H.4    Pääbo, S.5
  • 41
    • 24744437359 scopus 로고    scopus 로고
    • Extensive human DNA contamination in extracts from ancient dog bones and teeth
    • Malmström H, Stora J, Dalen L, Holmlund G, Götherström A (2005) Extensive human DNA contamination in extracts from ancient dog bones and teeth. Mol Biol Evol 22:2040-2047
    • (2005) Mol Biol Evol , vol.22 , pp. 2040-2047
    • Malmström, H.1    Stora, J.2    Dalen, L.3    Holmlund, G.4    Götherström, A.5
  • 44
    • 0032231870 scopus 로고    scopus 로고
    • On the probability of Neanderthal ancestry
    • Nordborg M (1998) On the probability of Neanderthal ancestry. Am J Hum Genet 63:1237-1240
    • (1998) Am J Hum Genet , vol.63 , pp. 1237-1240
    • Nordborg, M.1
  • 46
    • 0024970684 scopus 로고
    • Ancient DNA and the polymerase chain reaction
    • Pääbo S, Higuchi RG, Wilson AC (1989) Ancient DNA and the polymerase chain reaction. J Biol Chem 264:9709-9712
    • (1989) J Biol Chem , vol.264 , pp. 9709-9712
    • Pääbo, S.1    Higuchi, R.G.2    Wilson, A.C.3
  • 48
    • 0037672146 scopus 로고    scopus 로고
    • Nuclear gene sequences from a Late Pleistocene sloth coprolite
    • Poinar H, Kuch M, McDonald G, Martin P, Pääbo S (2003) Nuclear gene sequences from a Late Pleistocene sloth coprolite. Curr Biol 13:1150-1152
    • (2003) Curr Biol , vol.13 , pp. 1150-1152
    • Poinar, H.1    Kuch, M.2    McDonald, G.3    Martin, P.4    Pääbo, S.5
  • 49
    • 1942469380 scopus 로고    scopus 로고
    • Spiking of contemporary human template DNA with ancient DNA extracts induces mutations under PCR and generates non-authentic mitochondrial sequences
    • Pusch CM, Bachmann L (2004) Spiking of contemporary human template DNA with ancient DNA extracts induces mutations under PCR and generates non-authentic mitochondrial sequences. Mol Biol Evol 21:957-964
    • (2004) Mol Biol Evol , vol.21 , pp. 957-964
    • Pusch, C.M.1    Bachmann, L.2
  • 50
    • 33845905860 scopus 로고    scopus 로고
    • Rambaut A, Drummond A (2004) Tracer v1.2. University of Oxford, Oxford, UK
    • Rambaut A, Drummond A (2004) Tracer v1.2. University of Oxford, Oxford, UK
  • 53
    • 3242815528 scopus 로고    scopus 로고
    • Mutations induced by ancient DNA extracts?
    • Serre D, Hofreiter M, Pääbo S (2004a) Mutations induced by ancient DNA extracts? Mol Biol Evol 21:1463-1467
    • (2004) Mol Biol Evol , vol.21 , pp. 1463-1467
    • Serre, D.1    Hofreiter, M.2    Pääbo, S.3
  • 56
    • 0023818575 scopus 로고
    • Genetic and fossil evidence for the origin of modern humans
    • Stringer CB, Andrews P (1988) Genetic and fossil evidence for the origin of modern humans. Science 239:1263-1268
    • (1988) Science , vol.239 , pp. 1263-1268
    • Stringer, C.B.1    Andrews, P.2
  • 58
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 59
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems on the analysis of DNA sequences
    • Tavaré S (1986) Some probabilistic and statistical problems on the analysis of DNA sequences. Lect Math Life Sci 17:57-86
    • (1986) Lect Math Life Sci , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 60
    • 0026521195 scopus 로고
    • Human origins and analysis of mitochondrial DNA sequences
    • Templeton AR (1992) Human origins and analysis of mitochondrial DNA sequences. Science 255:737
    • (1992) Science , vol.255 , pp. 737
    • Templeton, A.R.1
  • 61
    • 0037034778 scopus 로고    scopus 로고
    • Out of Africa again and again
    • Templeton A (2002) Out of Africa again and again. Nature 416:45-51
    • (2002) Nature , vol.416 , pp. 45-51
    • Templeton, A.1
  • 62
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintzingerode F, Göbel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21:213-329
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-329
    • von Wintzingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3
  • 63
    • 0034687374 scopus 로고    scopus 로고
    • Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal
    • Vreeland RH, Rosenzweig WD, Powers DW (2000) Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal. Nature 407:897-900
    • (2000) Nature , vol.407 , pp. 897-900
    • Vreeland, R.H.1    Rosenzweig, W.D.2    Powers, D.W.3
  • 68
    • 1242299736 scopus 로고    scopus 로고
    • Isolation of nucleic acids and cultures from ice and permafrost
    • Willerslev E, Hansen AJ, Poinar HN (2004b) Isolation of nucleic acids and cultures from ice and permafrost. TREE 19:141-147
    • (2004) TREE , vol.19 , pp. 141-147
    • Willerslev, E.1    Hansen, A.J.2    Poinar, H.N.3
  • 69
    • 0002873417 scopus 로고
    • Multiregional evolution: The fossil alternative to Eden
    • Stringer C, Mellars P eds, Edinburgh University Press, Edinburgh
    • Wolpoff MH (1989) Multiregional evolution: the fossil alternative to Eden. In: Stringer C, Mellars P (eds) The human revolution. Edinburgh University Press, Edinburgh
    • (1989) The human revolution
    • Wolpoff, M.H.1
  • 70
    • 0002889425 scopus 로고
    • Modern Homo sapiens origins: A general theory of human evolution involving the fossil evidence from East Asia
    • Smith FH, Spencer F eds, Alan R. Liss, New York, pp
    • Wolpoff MH, Wu X, Thorne AG (1984) Modern Homo sapiens origins: a general theory of human evolution involving the fossil evidence from East Asia. In: Smith FH, Spencer F (eds) The origins of modern humans: a world survey of the fossil evidence. Alan R. Liss, New York, pp 411-483
    • (1984) The origins of modern humans: A world survey of the fossil evidence , pp. 411-483
    • Wolpoff, M.H.1    Wu, X.2    Thorne, A.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.