-
1
-
-
0031738130
-
Translational selection and molecular evolution
-
Akashi H, Eyre-Walker A. 1998. Translational selection and molecular evolution. Curr Opin Genet Dev. 8:688-693.
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 688-693
-
-
Akashi, H.1
Eyre-Walker, A.2
-
2
-
-
27144491328
-
Adaptive evolution of non-coding DNA in Drosophila
-
Andolfatto P. 2005. Adaptive evolution of non-coding DNA in Drosophila. Nature. 437:1149-1152.
-
(2005)
Nature
, vol.437
, pp. 1149-1152
-
-
Andolfatto, P.1
-
3
-
-
0031979122
-
Correlation between transcription and C to T mutations in the non-transcribed DNA strand
-
Beletskii A, Bhagwat AS. 1998. Correlation between transcription and C to T mutations in the non-transcribed DNA strand. Biol Chem. 379:549-551.
-
(1998)
Biol Chem
, vol.379
, pp. 549-551
-
-
Beletskii, A.1
Bhagwat, A.S.2
-
4
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M. 1991. The selection-mutation-drift theory of synonymous codon usage. Genetics. 129:897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
5
-
-
0037041421
-
The cost of inbreeding in Arabidopsis
-
Bustamante CD, Nielsen R, Sawyer SA, Olsen KM, Purugganan MD, Hartl DL. 2002. The cost of inbreeding in Arabidopsis. Nature. 416:531-534.
-
(2002)
Nature
, vol.416
, pp. 531-534
-
-
Bustamante, C.D.1
Nielsen, R.2
Sawyer, S.A.3
Olsen, K.M.4
Purugganan, M.D.5
Hartl, D.L.6
-
6
-
-
0033529862
-
Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA
-
Campbell A, Mrazek J, Karlin S. 1999. Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA. Proc Natl Acad Sci USA. 96:9184-9189.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 9184-9189
-
-
Campbell, A.1
Mrazek, J.2
Karlin, S.3
-
7
-
-
31144465926
-
Hearing silence: Non-neutral evolution at synonymous sites in mammals
-
Chamary JV, Parmley JL, Hurst LD. 2006. Hearing silence: non-neutral evolution at synonymous sites in mammals. Nat Rev Genet. 7:98-108.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
8
-
-
0344653653
-
Codon usage and gene function are related in sequences of Arabidopsis thaliana
-
Chiapello H, Lisacek F, Caboche M, Henaut A. 1998. Codon usage and gene function are related in sequences of Arabidopsis thaliana. Gene. 209:GC1-GC38.
-
(1998)
Gene
, vol.209
-
-
Chiapello, H.1
Lisacek, F.2
Caboche, M.3
Henaut, A.4
-
9
-
-
0033799618
-
Active conservation of noncoding sequences revealed by three-way species comparisons
-
Dubchak I, Brudno M, Loots GG, Pachter L, Mayor C, Rubin EM, Frazer KA. 2000. Active conservation of noncoding sequences revealed by three-way species comparisons. Genome Res. 10:1304-1306.
-
(2000)
Genome Res
, vol.10
, pp. 1304-1306
-
-
Dubchak, I.1
Brudno, M.2
Loots, G.G.3
Pachter, L.4
Mayor, C.5
Rubin, E.M.6
Frazer, K.A.7
-
10
-
-
0034237669
-
tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes
-
Duret L. 2000. tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes. Trends Genet. 16:287-289.
-
(2000)
Trends Genet
, vol.16
, pp. 287-289
-
-
Duret, L.1
-
11
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila and Arabidopsis
-
Duret L, Mouchiroud D. 1999. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila and Arabidopsis. Proc Natl Acad Sci USA. 96:4482-4487.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
12
-
-
0036493203
-
Regularities of context-dependent codon bias in eukaryotic genes
-
Fedorov A, Saxonov S, Gilbert W. 2002. Regularities of context-dependent codon bias in eukaryotic genes. Nucleic Acids Res. 30:1192-1197.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1192-1197
-
-
Fedorov, A.1
Saxonov, S.2
Gilbert, W.3
-
13
-
-
0029874447
-
Asymmetries generated by transcription-coupled repair in enterobacterial genomes
-
Francino MP, Chao L, Riley MA, Ochman H. 1996. Asymmetries generated by transcription-coupled repair in enterobacterial genomes. Science. 272:107-109.
-
(1996)
Science
, vol.272
, pp. 107-109
-
-
Francino, M.P.1
Chao, L.2
Riley, M.A.3
Ochman, H.4
-
14
-
-
0030976320
-
Strand asymmetries in DNA evolution
-
Francino MP, Ochman H. 1997. Strand asymmetries in DNA evolution. Trends Genet. 13:240-245.
-
(1997)
Trends Genet
, vol.13
, pp. 240-245
-
-
Francino, M.P.1
Ochman, H.2
-
15
-
-
0034762015
-
Evolutionarily conserved sequences on human chromosome 21
-
Frazer KA, Sheehan JB, Stokowski RP, Chen X, Hosseini R, Cheng J-F, Fodor SPA, Cox DR, Patil N. 2001. Evolutionarily conserved sequences on human chromosome 21. Genome Res. 11:1651-1659.
-
(2001)
Genome Res
, vol.11
, pp. 1651-1659
-
-
Frazer, K.A.1
Sheehan, J.B.2
Stokowski, R.P.3
Chen, X.4
Hosseini, R.5
Cheng, J.-F.6
Fodor, S.P.A.7
Cox, D.R.8
Patil, N.9
-
16
-
-
0039273172
-
-
2nd ed. Belmont, CA, Wadsworth Publishing Co
-
Grossman S. 1984. Elementary linear algebra. 2nd ed. Belmont, (CA): Wadsworth Publishing Co.
-
(1984)
Elementary linear algebra
-
-
Grossman, S.1
-
17
-
-
1242296827
-
Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila
-
Halligan DL, Eyre-Walker A, Andolfatto P, Keightley PD. 2004. Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila. Genome Res. 14:273-279.
-
(2004)
Genome Res
, vol.14
, pp. 273-279
-
-
Halligan, D.L.1
Eyre-Walker, A.2
Andolfatto, P.3
Keightley, P.D.4
-
18
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol. 2:13-35.
-
(1985)
Mol Biol Evol
, vol.2
, pp. 13-35
-
-
Ikemura, T.1
-
19
-
-
0036956986
-
Transcription-dependent increase in multiple classes of base substitution mutations in Escherichia coli
-
Klapacz J, Bhagwat AS. 2002. Transcription-dependent increase in multiple classes of base substitution mutations in Escherichia coli. J Bacteriol. 184:6866-6872.
-
(2002)
J Bacteriol
, vol.184
, pp. 6866-6872
-
-
Klapacz, J.1
Bhagwat, A.S.2
-
20
-
-
14844331757
-
Inference of codon preferences in Arabidopsis thaliana
-
Kliman RM, Henry AN. 2005. Inference of codon preferences in Arabidopsis thaliana. Int J Plant Sci. 166:3-11.
-
(2005)
Int J Plant Sci
, vol.166
, pp. 3-11
-
-
Kliman, R.M.1
Henry, A.N.2
-
21
-
-
0032032206
-
U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize
-
Ko CH, Brendel V, Taylor D, Walbot V. 1998. U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize. Plant Mol Biol. 36:573-583.
-
(1998)
Plant Mol Biol
, vol.36
, pp. 573-583
-
-
Ko, C.H.1
Brendel, V.2
Taylor, D.3
Walbot, V.4
-
22
-
-
0031047088
-
Influence of neighboring base composition on substitutions at four-fold degenerate sites of chloroplast coding sequences
-
Morton BR. 1997. Influence of neighboring base composition on substitutions at four-fold degenerate sites of chloroplast coding sequences. Mol Biol Evol. 14:189-194.
-
(1997)
Mol Biol Evol
, vol.14
, pp. 189-194
-
-
Morton, B.R.1
-
23
-
-
0031979388
-
Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages
-
Morton BR. 1998. Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages. J Mol Evol. 46:449-459.
-
(1998)
J Mol Evol
, vol.46
, pp. 449-459
-
-
Morton, B.R.1
-
24
-
-
0034811431
-
Selection at the amino acid level can influence synonymous codon usage: Implications for the study of codon adaptation in plastid genes
-
Morton BR. 2001. Selection at the amino acid level can influence synonymous codon usage: implications for the study of codon adaptation in plastid genes. Genetics. 159:347-358.
-
(2001)
Genetics
, vol.159
, pp. 347-358
-
-
Morton, B.R.1
-
25
-
-
0037403391
-
The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA
-
Morton BR. 2003. The role of context-dependent mutations in generating compositional and codon usage bias in grass chloroplast DNA. J Mol Evol. 56:616-629.
-
(2003)
J Mol Evol
, vol.56
, pp. 616-629
-
-
Morton, B.R.1
-
26
-
-
33644772171
-
Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition
-
Morton BR, Bi IV, McMullen MD, Gaut BS. 2006. Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics. 172:569-577.
-
(2006)
Genetics
, vol.172
, pp. 569-577
-
-
Morton, B.R.1
Bi, I.V.2
McMullen, M.D.3
Gaut, B.S.4
-
27
-
-
0033938079
-
Codon usage in plastid genes is correlated with context, position within the gene and amino acid content
-
Morton BR, So BG. 2000. Codon usage in plastid genes is correlated with context, position within the gene and amino acid content. J Mol Evol. 50:184-193.
-
(2000)
J Mol Evol
, vol.50
, pp. 184-193
-
-
Morton, B.R.1
So, B.G.2
-
28
-
-
0346726023
-
Neutral mutations and neutral substitutions in bacterial genomes
-
Ochman H. 2003. Neutral mutations and neutral substitutions in bacterial genomes. Mol Biol Evol. 20:2091-2096.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 2091-2096
-
-
Ochman, H.1
-
29
-
-
0036850152
-
Requirements for intron-mediated enhancement of gene expression in Arabidopsis
-
Rose AB. 2002. Requirements for intron-mediated enhancement of gene expression in Arabidopsis. RNA. 8:1444-1453.
-
(2002)
RNA
, vol.8
, pp. 1444-1453
-
-
Rose, A.B.1
-
30
-
-
0022616874
-
Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation
-
Shpaer EG. 1986. Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation. J Mol Biol. 188:555-564.
-
(1986)
J Mol Biol
, vol.188
, pp. 555-564
-
-
Shpaer, E.G.1
-
31
-
-
12544254467
-
DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes
-
Tran RK, Henikoff JG, Zilberman D, Ditt RF, Jacobsen SE, Henikoff S. 2005. DNA methylation profiling identifies CG methylation clusters in Arabidopsis genes. Curr Biol. 15:154-159.
-
(2005)
Curr Biol
, vol.15
, pp. 154-159
-
-
Tran, R.K.1
Henikoff, J.G.2
Zilberman, D.3
Ditt, R.F.4
Jacobsen, S.E.5
Henikoff, S.6
-
32
-
-
4143122090
-
Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata
-
Wright SI, Yau CBK, Looseley M, Meyers BC. 2004. Effects of gene expression on molecular evolution in Arabidopsis thaliana and Arabidopsis lyrata. Mol Biol Evol. 21:1719-1726.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1719-1726
-
-
Wright, S.I.1
Yau, C.B.K.2
Looseley, M.3
Meyers, B.C.4
-
33
-
-
0022405085
-
Sense codons are found in specific contexts
-
Yarus M, Folley LS. 1985. Sense codons are found in specific contexts. J Mol Biol. 182:529-540.
-
(1985)
J Mol Biol
, vol.182
, pp. 529-540
-
-
Yarus, M.1
Folley, L.S.2
|