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Volumn 50, Issue 2, 2000, Pages 184-193

Codon usage in plastid genes is correlated with context, position within the gene, and amino acid content

Author keywords

Gene expression; Selection; Translation efficiency

Indexed keywords

AMINO ACID;

EID: 0033938079     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002399910020     Document Type: Article
Times cited : (23)

References (27)
  • 1
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • Andersson SGE, Kurland CG (1990) Codon preferences in free-living microorganisms. Microbiol Rev 54:198-210
    • (1990) Microbiol Rev , vol.54 , pp. 198-210
    • Andersson, S.G.E.1    Kurland, C.G.2
  • 3
    • 0022472187 scopus 로고
    • Neighboring base effects on substitution rates in pseudogenes
    • Bulmer M (1986) Neighboring base effects on substitution rates in pseudogenes. Mol Biol Evol 3:322-329
    • (1986) Mol Biol Evol , vol.3 , pp. 322-329
    • Bulmer, M.1
  • 4
    • 0025348395 scopus 로고
    • Suppression of the negative effect of minor arginine codons on gene expression; Preferential usage of minor codons within the first 25 codons of the Escherichia coli genes
    • Chen GT, Inouye M (1990) Suppression of the negative effect of minor arginine codons on gene expression; Preferential usage of minor codons within the first 25 codons of the Escherichia coli genes. Nucleic Acids Res 18:1465-1473
    • (1990) Nucleic Acids Res , vol.18 , pp. 1465-1473
    • Chen, G.T.1    Inouye, M.2
  • 5
    • 0027960812 scopus 로고
    • Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli
    • Chen GT, Inouye M (1994) Role of the AGA/AGG codons, the rarest codons in global gene expression in Escherichia coli. Genes Dev 8:2641-2652
    • (1994) Genes Dev , vol.8 , pp. 2641-2652
    • Chen, G.T.1    Inouye, M.2
  • 6
    • 0025775913 scopus 로고
    • Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins
    • D'Onofrio G, Mouchiroud D, Aissani B, Gautier C, Bernardi G (1991) Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins. J Mol Evol 32:504-510
    • (1991) J Mol Evol , vol.32 , pp. 504-510
    • D'Onofrio, G.1    Mouchiroud, D.2    Aissani, B.3    Gautier, C.4    Bernardi, G.5
  • 7
    • 0027432923 scopus 로고
    • Reduced synonymous substitution rate at the start of enterobacterial genes
    • Eyre-Walker A, Bulmer M (1993) Reduced synonymous substitution rate at the start of enterobacterial genes. Nucleic Acids Res 21: 4599-4603
    • (1993) Nucleic Acids Res , vol.21 , pp. 4599-4603
    • Eyre-Walker, A.1    Bulmer, M.2
  • 8
    • 0031020582 scopus 로고    scopus 로고
    • Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria
    • Foster PG, Jermiin LS, Hickey DA (1997) Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria. J Mol Evol 44:282-288
    • (1997) J Mol Evol , vol.44 , pp. 282-288
    • Foster, P.G.1    Jermiin, L.S.2    Hickey, D.A.3
  • 9
    • 0023372221 scopus 로고
    • Codon contexts in enterobacterial and coliphage genes
    • Gouy M (1987) Codon contexts in enterobacterial and coliphage genes. Mol Biol Evol 4:426-444
    • (1987) Mol Biol Evol , vol.4 , pp. 426-444
    • Gouy, M.1
  • 10
    • 0030012885 scopus 로고    scopus 로고
    • Preference for guanosine at first codon position in highly expressed Escherichia coli genes. A relationship with translational efficiency
    • Gutierrez G, Marquez L, Marin A (1996) Preference for guanosine at first codon position in highly expressed Escherichia coli genes. A relationship with translational efficiency. Nucleic Acids Res 24: 2525-2527
    • (1996) Nucleic Acids Res , vol.24 , pp. 2525-2527
    • Gutierrez, G.1    Marquez, L.2    Marin, A.3
  • 11
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura T (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2:13-35
    • (1985) Mol Biol Evol , vol.2 , pp. 13-35
    • Ikemura, T.1
  • 12
    • 0022881350 scopus 로고
    • Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes
    • Jukes TT, Bhurshan V (1986) Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes. J Mol Evol 24:39-44
    • (1986) J Mol Evol , vol.24 , pp. 39-44
    • Jukes, T.T.1    Bhurshan, V.2
  • 13
    • 0030569016 scopus 로고    scopus 로고
    • What drives codon choices in human genes?
    • Karlin S, Mrazek J (1996) What drives codon choices in human genes? J Mol Biol 262:459-472
    • (1996) J Mol Biol , vol.262 , pp. 459-472
    • Karlin, S.1    Mrazek, J.2
  • 14
    • 0028088517 scopus 로고
    • Hydrophobicity, expressivity and aromaticity are the major trends of amino acid usage in 999 Escherichia coli chromosome-encoded genes
    • Lobry JR, Gautier C (1994) Hydrophobicity, expressivity and aromaticity are the major trends of amino acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res 22:3174-3180
    • (1994) Nucleic Acids Res , vol.22 , pp. 3174-3180
    • Lobry, J.R.1    Gautier, C.2
  • 15
    • 15844423271 scopus 로고    scopus 로고
    • Site-specific codon bias in bacteria
    • Maynard Smith J, Smith NH (1996) Site-specific codon bias in bacteria. Genetics 142:1037-1043
    • (1996) Genetics , vol.142 , pp. 1037-1043
    • Maynard Smith, J.1    Smith, N.H.2
  • 16
    • 0027328291 scopus 로고
    • Chloroplast DNA codon use: Evidence for selection at the psbA locus based on tRNA availability
    • Morton BR (1993) Chloroplast DNA codon use: Evidence for selection at the psbA locus based on tRNA availability. J Mol Evol 37:273-280
    • (1993) J Mol Evol , vol.37 , pp. 273-280
    • Morton, B.R.1
  • 17
    • 0029820342 scopus 로고    scopus 로고
    • Selection on the codon bias of Chlamydomonas reinhardtii chloroplast genes and the plant psbA gene
    • Morton BR (1996) Selection on the codon bias of Chlamydomonas reinhardtii chloroplast genes and the plant psbA gene. J Mol Evol 43:28-31
    • (1996) J Mol Evol , vol.43 , pp. 28-31
    • Morton, B.R.1
  • 18
    • 0031979388 scopus 로고    scopus 로고
    • Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages
    • Morton BR (1998) Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages. J Mol Evol 46:449-459
    • (1998) J Mol Evol , vol.46 , pp. 449-459
    • Morton, B.R.1
  • 19
    • 0008588675 scopus 로고    scopus 로고
    • Codon bias and the context dependency of nucleotide substitutions in the evolution of plastid DNA
    • in press
    • Morton BR (1999) Codon bias and the context dependency of nucleotide substitutions in the evolution of plastid DNA. Evol Biol (in press)
    • (1999) Evol Biol
    • Morton, B.R.1
  • 20
    • 0021633530 scopus 로고
    • Codon context effects in missense suppression
    • Murgola EJ, Pagel FT, Hijazi KA (1984) Codon context effects in missense suppression. J Mol Biol 175:19-27
    • (1984) J Mol Biol , vol.175 , pp. 19-27
    • Murgola, E.J.1    Pagel, F.T.2    Hijazi, K.A.3
  • 21
    • 0028948605 scopus 로고
    • Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 gene superfamily
    • Porter TD (1995) Correlation between codon usage, regional genomic nucleotide composition, and amino acid composition in the cytochrome P-450 gene superfamily. Biochim Biophys Acta 1261:394-400
    • (1995) Biochim Biophys Acta , vol.1261 , pp. 394-400
    • Porter, T.D.1
  • 22
    • 0026002819 scopus 로고
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution
    • Sharp PM (1991) Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position, and concerted evolution. J Mol Evol 33:23-33
    • (1991) J Mol Evol , vol.33 , pp. 23-33
    • Sharp, P.M.1
  • 23
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp PM, Li WH (1987) The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15:1281-1295
    • (1987) Nucleic Acids Res , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 24
    • 0028631919 scopus 로고
    • Codon usage and genome evolution
    • Sharp PM, Matassi G (1994) Codon usage and genome evolution. Curr Opin Gen Dev 4:851-860
    • (1994) Curr Opin Gen Dev , vol.4 , pp. 851-860
    • Sharp, P.M.1    Matassi, G.2
  • 25
    • 0022616874 scopus 로고
    • Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation
    • Shpaer EG (1986) Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation. J Mol Biol 188:555-564
    • (1986) J Mol Biol , vol.188 , pp. 555-564
    • Shpaer, E.G.1
  • 26
    • 73049156042 scopus 로고
    • Compositional correlation between deoxyribonucleic acid and protein
    • Sueoka N (1961) Compositional correlation between deoxyribonucleic acid and protein. Cold Spring Harbor Symp Quant Biol 26:35-43
    • (1961) Cold Spring Harbor Symp Quant Biol , vol.26 , pp. 35-43
    • Sueoka, N.1
  • 27
    • 0022405085 scopus 로고
    • Sense codons are found in specific contexts
    • Yarus M, Folley LS (1985) Sense codons are found in specific contexts. J Mol Biol 182:529-540
    • (1985) J Mol Biol , vol.182 , pp. 529-540
    • Yarus, M.1    Folley, L.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.