Mapping von Willebrand factor A domain binding sites on a snake venom metalloproteinase cysteine-rich domain

Archives of Biochemistry and Biophysics

Volumn 457, Issue 1, 2007, Pages 41-46

  Pinto, Antonio F M ^a,b   Terra, Renata M S ^b   Guimaraes, Jorge A ^b   Fox, Jay W ^a  

^a UNIVERSITY OF VIRGINIA   (United States)

^b FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

Author keywords

Cysteine rich domain; Snake venom metalloproteinases; SVMP; von Willebrand factor; vWF A domains

Indexed keywords

BINDING PROTEIN; CYSTEINE DERIVATIVE; JARARHAGIN; LIGAND; METALLOPROTEINASE; SNAKE VENOM; SYNTHETIC PEPTIDE; TOXIN; VON WILLEBRAND FACTOR;

ARTICLE; BINDING SITE; BLEEDING; CRYSTAL STRUCTURE; MOLECULAR MODEL; NONHUMAN; PEPTIDE MAPPING; PLASMA PROTEIN BINDING; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE;

ANIMALS; BINDING SITES; CROTALID VENOMS; CYSTEINE; HUMANS; METALLOENDOPEPTIDASES; MODELS, MOLECULAR; OLIGOPEPTIDES; PLATELET AGGREGATION; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; VON WILLEBRAND FACTOR;

RUMEX;

EID: 33845693751     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2006.10.010     Document Type: Article

References (37)

1. Fox J.W., and Serrano S.M. Toxicon 45 (2005) 969-985
2. Bjarnason J.B., and Fox J.W. In: Barret A.J., Rawlings N.D., and Woessner J.F. (Eds). Handbook of Proteolytic Enzymes (1998), Academic Press, San Diego, CA 1246-1254
3. Blobel C.P. Nat. Rev. Mol. Cell Biol. 6 (2005) 32-43
4. Porter S., Clark I.M., Kevorkian L., and Edwards D.R. Biochem. J. 386 (2005) 15-27
5. Fujikawa K., Suzuki H., McMullen B., and Chung D. Blood 98 (2001) 1662-1666
6. Soejima K., Mimura N., Hirashima M., Maeda H., Hamamoto T., Nakagaki T., and Nozaki C. J. Biochem. (Tokyo) 130 (2001) 475-480
7. Levy G.G., Nichols W.C., Lian E.C., Foroud T., McClintick J.N., McGee B.M., Yang A.Y., Siemieniak D.R., Stark K.R., Gruppo R., Sarode R., Shurin S.B., Chandrasekaran V., Stabler S.P., Sabio H., Bouhassira E.E., Upshaw Jr. J.D., Ginsburg D., and Tsai H.M. Nature 413 (2001) 488-494
8. Kokame K., Matsumoto M., Soejima K., Yagi H., Ishizashi H., Funato M., Tamai H., Konno M., Kamide K., Kawano Y., Miyata T., and Fujimura Y. Proc. Natl. Acad. Sci. USA 99 (2002) 11902-11907
9. Zheng X., Nishio K., Majerus E.M., and Sadler J.E. J. Biol. Chem. 278 (2003) 30136-30141
10. Kamiguti A.S., Hay C.R., Theakston R.D., and Zuzel M. Toxicon 34 (1996) 627-642
11. Hamako J., Matsui T., Nishida S., Nomura S., Fujimura Y., Ito M., Ozeki Y., and Titani K. Thromb. Haemost. 80 (1998) 499-505
12. Usami Y., Fujimura Y., Miura S., Shima H., Yoshida E., Yoshioka A., Hirano K., Suzuki M., and Titani K. Biochem. Biophys. Res. Commun. 201 (1994) 331-339
13. Jia L.G., Wang X.M., Shannon J.D., Bjarnason J.B., and Fox J.W. J. Biol. Chem. 272 (1997) 13094-13102
14. Jia L.G., Wang X.M., Shannon J.D., Bjarnason J.B., and Fox J.W. Arch. Biochem. Biophys. 373 (2000) 281-286
15. Serrano S.M., Jia L.G., Wang D., Shannon J.D., and Fox J.W. Biochem. J. 391 (2005) 69-76
16. Takeda S., Igarashi T., Mori H., and Araki S. Embo. J. 25 (2006) 2388-2396
17. Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., and Bourne P.E. Nucleic Acids Res. 28 (2000) 235-242
18. Emsley J., Cruz M., Handin R., and Liddington R. J. Biol. Chem. 273 (1998) 10396-10401
19. Laskowski R.A., Macarthur M.W., Moss D.S., and Thornton J.M. J. Appl. Crystallogr. 26 (1993) 283-291
20. Ritchie D.W., and Kemp G.J. Proteins 39 (2000) 178-194
21. Lindahl E., Hess B., and van der Spoel D. J. Mol. Model. 7 (2001) 306-317
22. Guex N., and Peitsch M.C. Electrophoresis 18 (1997) 2714-2723
23. Berendsen H.J.C., Grigera J.R., and Straatsma T.P. J. Phys. Chem. 91 (1987) 6269-6271
24. Darden T., York D., and Pedersen L. J. Chem. Phys. 98 (1993) 10089-10092
25. Hess B., Bekker H., Berendsen H.J.C., and Fraaije J.G.E.M. J. Comput. Chem. 18 (1997) 1463-1472
26. Miyamoto S., and Kollman P.A. J. Comput. Chem. 13 (1992) 952-962
27. Wallace A.C., Laskowski R.A., and Thornton J.M. Protein Engin. 8 (1995) 127-134
28. Matsui T., and Hamako J. Toxicon 45 (2005) 1075-1087
29. Fukuda K., Doggett T.A., Bankston L.A., Cruz M.A., Diacovo T.G., and Liddington R.C. Structure 10 (2002) 943-950
30. Maita N., Nishio K., Nishimoto E., Matsui T., Shikamoto Y., Morita T., Sadler J.E., and Mizuno H. J. Biol. Chem. 278 (2003) 37777-37781
31. Kamiguti A.S., Hay C.R., and Zuzel M. Biochem. J. 320 Pt. 2 (1996) 635-641
32. Zigrino P., Kamiguti A.S., Eble J., Drescher C., Nischt R., Fox J.W., and Mauch C. J. Biol. Chem. 277 (2002) 40528-40535
33. Zhou Q., Smith J.B., and Grossman M.H. Biochem. J. 307 Pt. 2 (1995) 411-417
34. Kamiguti A.S., Cardoso J.L., Theakston R.D., Sano-Martins I.S., Hutton R.A., Rugman F.P., Warrell D.A., and Hay C.R. Toxicon 29 (1991) 961-972
35. Kamiguti A.S., Gallagher P., Marcinkiewicz C., Theakston R.D., Zuzel M., and Fox J.W. FEBS Lett. 549 (2003) 129-134
36. Bjarnason J.B., and Fox J.W. Pharmacol. Ther. 62 (1994) 325-372
37. Baramova E.N., Shannon J.D., Bjarnason J.B., and Fox J.W. Arch. Biochem. Biophys. 275 (1989) 63-71