메뉴 건너뛰기




Volumn 62, Issue 1, 2006, Pages 10-18

Bayesian robust inference for differential gene expression in microarrays with multiple samples

Author keywords

Affymetrix; Bayesian hierarchical model; Bonferroni adjustment; cDNA microarrays; Empirical Bayes; Heteroscedasticity; Markov chain Monte Carlo; Mixture distribution; Outlier; Singular distribution; t distribution

Indexed keywords

GENE EXPRESSION; HIERARCHICAL SYSTEMS; MARKOV PROCESSES; MICROARRAYS; MONTE CARLO METHODS; STATISTICAL TESTS; STATISTICS;

EID: 33645086851     PISSN: 0006341X     EISSN: 15410420     Source Type: Journal    
DOI: 10.1111/j.1541-0420.2005.00397.x     Document Type: Article
Times cited : (77)

References (26)
  • 1
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • and
    • Baldi P. and Long A. 2001 A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes Bioinformatics 17, 509 519
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.2
  • 3
    • 0031246430 scopus 로고    scopus 로고
    • Ratio-based decisions and the quantitative analysis of cDNA microarray images
    • and
    • Chen Y. Dougherty E. R. and Bittner M. L. 1997 Ratio-based decisions and the quantitative analysis of cDNA microarray images Journal of Biomedical Optics 2, 364 374
    • (1997) Journal of Biomedical Optics , vol.2 , pp. 364-374
    • Chen, Y.1    Dougherty, E.R.2    Bittner, M.L.3
  • 5
    • 0037276175 scopus 로고    scopus 로고
    • Statistical tests for differential expression in cDNA microarray experiments
    • and
    • Cui X. and Churchill G. 2003 Statistical tests for differential expression in cDNA microarray experiments Genome Biology 4, 210
    • (2003) Genome Biology , vol.4 , pp. 210
    • Cui, X.1    Churchill, G.2
  • 6
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • and
    • Dudoit S. Yang Y. H. Callow M. J. and Speed T. P. 2002 Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments Statistica Sinica 12, 111 139
    • (2002) Statistica Sinica , vol.12 , pp. 111-139
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.P.4
  • 7
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • and
    • Dudoit S. Shaffer J. and Boldrick J. 2003 Multiple hypothesis testing in microarray experiments Statistical Science 18, 71 103
    • (2003) Statistical Science , vol.18 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.2    Boldrick, J.3
  • 8
    • 2142732441 scopus 로고    scopus 로고
    • Large-scale simultaneous hypothesis testing: The choice of a null hypothesis
    • Efron B. 2004 Large-scale simultaneous hypothesis testing: The choice of a null hypothesis Journal of the American Statistical Association 99, 96 104
    • (2004) Journal of the American Statistical Association , vol.99 , pp. 96-104
    • Efron, B.1
  • 13
    • 2942640671 scopus 로고    scopus 로고
    • Statistical analysis of microarray data: A Bayesian approach
    • and
    • Gottardo R. Pannucci J. A. Kuske C. R. and Brettin T. 2003a Statistical analysis of microarray data: A Bayesian approach Biostatistics 4, 597 620
    • (2003) Biostatistics , vol.4 , pp. 597-620
    • Gottardo, R.1    Pannucci, J.A.2    Kuske, C.R.3    Brettin, T.4
  • 17
    • 0346888587 scopus 로고    scopus 로고
    • On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
    • and
    • Kendziorski C. Newton M. Lan H. and Gould M. N. 2003 On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles Statistics in Medicine 22, 3899 3914
    • (2003) Statistics in Medicine , vol.22 , pp. 3899-3914
    • Kendziorski, C.1    Newton, M.2    Lan, H.3    Gould, M.N.4
  • 19
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • and
    • Newton M. C. Kendziorski C. M. Richmond C. S. Blattner F. R. and Tsui K. W. 2001 On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data Journal of Computational Biology 8, 37 52
    • (2001) Journal of Computational Biology , vol.8 , pp. 37-52
    • Newton, M.C.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 20
    • 4444235995 scopus 로고    scopus 로고
    • Detecting differential gene expression with a semiparametric hierarchical mixture method
    • and
    • Newton M. Noueiry A. Sarkar D. and Ahlquist P. 2004 Detecting differential gene expression with a semiparametric hierarchical mixture method Biostatistics 5, 155 176
    • (2004) Biostatistics , vol.5 , pp. 155-176
    • Newton, M.1    Noueiry, A.2    Sarkar, D.3    Ahlquist, P.4
  • 21
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray
    • and
    • Schena M. Shalon D. Davis R. W. and Brown P. 1995 Quantitative monitoring of gene-expression patterns with a complementary-DNA microarray Science 270, 467 470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.4
  • 22
    • 0042835652 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in high-density oligonucleotide arrays accounting for the quantification limits of the technology
    • and
    • Tadesse M. Ibrahim J. and Mutter G. 2003 Identification of differentially expressed genes in high-density oligonucleotide arrays accounting for the quantification limits of the technology Biometrics 59, 542 554
    • (2003) Biometrics , vol.59 , pp. 542-554
    • Tadesse, M.1    Ibrahim, J.2    Mutter, G.3
  • 23
    • 0035875553 scopus 로고    scopus 로고
    • Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects
    • and
    • Tseng G. C. Oh M. Rohlin L. Liao J. C. and Wong W. H. 2001 Issues in cDNA microarray analysis: Quality filtering, channel normalization, models of variations and assessment of gene effects Nucleic Acids Research 29, 2549 2557
    • (2001) Nucleic Acids Research , vol.29 , pp. 2549-2557
    • Tseng, G.C.1    Oh, M.2    Rohlin, L.3    Liao, J.C.4    Wong, W.H.5
  • 26
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • and
    • Yang Y. H. Dudoit S. Luu P. Lin D. M. Peng V. Ngai J. and Speed T. P. 2002 Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation Nucleic Acids Research 30, e15
    • (2002) Nucleic Acids Research , vol.30 , pp. 15
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.