-
1
-
-
18744382506
-
Prottest: Selection of best-fit models of protein evolution
-
Abascal F, Zardoya R, Posada D (2005) Prottest: selection of best-fit models of protein evolution. Bioinformatics 21:2104-2105
-
(2005)
Bioinformatics
, vol.21
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
0343924290
-
Histidine 109 in peptidyl-prolyl cis-trans isomerase of Bacillus subtilis plays an important role in catalysis and in cyclosporin A binding
-
Achenbach TV, Göthel SF, Marahiel MA (1997) Histidine 109 in peptidyl-prolyl cis-trans isomerase of Bacillus subtilis plays an important role in catalysis and in cyclosporin A binding. FEMS Microbiol Lett 154:139-144
-
(1997)
FEMS Microbiol Lett
, vol.154
, pp. 139-144
-
-
Achenbach, T.V.1
Göthel, S.F.2
Marahiel, M.A.3
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
4
-
-
0027404019
-
A cyclophilin-related protein involved in the function of natural killer cells
-
Anderson SK, Gallinger S, Roder J, Frey J, Young HA, Ortaldo JR (1993) A cyclophilin-related protein involved in the function of natural killer cells. Proc Natl Acad Sci USA 15:542-546
-
(1993)
Proc Natl Acad Sci USA
, vol.15
, pp. 542-546
-
-
Anderson, S.K.1
Gallinger, S.2
Roder, J.3
Frey, J.4
Young, H.A.5
Ortaldo, J.R.6
-
5
-
-
0008824942
-
The domains of death: Evolution of the apoptosis machinery
-
Aravind L, Dixit VM, Koonin EV (1999) The domains of death: evolution of the apoptosis machinery. Trends Biochem Sci 24:47-53
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 47-53
-
-
Aravind, L.1
Dixit, V.M.2
Koonin, E.V.3
-
6
-
-
0032006154
-
Genetic manipulation of antibiotic-producing Streptomyces
-
Baltz RH (1998) Genetic manipulation of antibiotic-producing Streptomyces. Trends Microbiol 6:76-83
-
(1998)
Trends Microbiol
, vol.6
, pp. 76-83
-
-
Baltz, R.H.1
-
7
-
-
0004491398
-
Prolyl isomerases in a minimal cell
-
Bang H, Pecht A, Raddatz G, Scior T, Solbach W, Brune K, Pahl A (2000) Prolyl isomerases in a minimal cell. Eur J Biochem 267:3270-3280
-
(2000)
Eur J Biochem
, vol.267
, pp. 3270-3280
-
-
Bang, H.1
Pecht, A.2
Raddatz, G.3
Scior, T.4
Solbach, W.5
Brune, K.6
Pahl, A.7
-
8
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417:141-147
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeno-Tarraga, A.M.3
Challis, G.L.4
Thomson, N.R.5
James, K.D.6
Harris, D.E.7
Quail, M.A.8
Kieser, H.9
Harper, D.10
Bateman, A.11
Brown, S.12
Chandra, G.13
Chen, C.W.14
Collins, M.15
Cronin, A.16
Fraser, A.17
Goble, A.18
Hidalgo, J.19
Hornsby, T.20
Howarth, S.21
Huang, C.H.22
Kieser, T.23
Larke, L.24
Murphy, L.25
Oliver, K.26
O'Neil, S.27
Rabbinowitsch, E.28
Rajandream, M.A.29
Rutherford, K.30
Rutter, S.31
Seeger, K.32
Saunders, D.33
Sharp, S.34
Squares, R.35
Squares, S.36
Taylor, K.37
Warren, T.38
Wietzorrek, A.39
Woodward, J.40
Barrell, B.G.41
Parkhill, J.42
Hopwood, D.A.43
more..
-
9
-
-
0036231382
-
Generation of Campylobacter jejuni genetic diversity in vivo
-
Boer P, Wagenaar JA, Achterberg RP, Putten JP, Schouls LM, Duim B (2002) Generation of Campylobacter jejuni genetic diversity in vivo. Mol Microbiol 44:351-319
-
(2002)
Mol Microbiol
, vol.44
, pp. 351-1319
-
-
Boer, P.1
Wagenaar, J.A.2
Achterberg, R.P.3
Putten, J.P.4
Schouls, L.M.5
Duim, B.6
-
10
-
-
0035195997
-
Regulation of sporulation in Streptomyces coelicolor A3(2): A checkpoint multiplex?
-
Chater KF (2001) Regulation of sporulation in Streptomyces coelicolor A3(2): A checkpoint multiplex? Curr Opin Microbiol 4:667-673
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 667-673
-
-
Chater, K.F.1
-
11
-
-
0037383031
-
Signalling early developmental events in two highly diverged Streptomyces species
-
Chater KF, Horinouchi S (2003) Signalling early developmental events in two highly diverged Streptomyces species. Mol Microbiol 48:9-15
-
(2003)
Mol Microbiol
, vol.48
, pp. 9-15
-
-
Chater, K.F.1
Horinouchi, S.2
-
12
-
-
0017201026
-
Restriction of a bacteriophage of Streptomyces albus G involving endonuclease SalI
-
Chater KF, Wilde LC (1976) Restriction of a bacteriophage of Streptomyces albus G involving endonuclease SalI. J Bacteriol 128:644-650
-
(1976)
J Bacteriol
, vol.128
, pp. 644-650
-
-
Chater, K.F.1
Wilde, L.C.2
-
13
-
-
10744220468
-
The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: A bioinformatics assessment
-
Clark HF, Gurney AL, Abaya E, Baker K, Baldwin D, Brush J, Chen J, Chow B, Chui C, Crowley C, Currell B, Deuel B, Dowd P, Eaton D, Foster J, Grimaldi C, Gu Q, Hass PE, Heldens S, Huang A, Kim HS, Klimowski L, Jin Y, Johnson S, Lee J, Lewis L, Liao D, Mark M, Robbie E, Sanchez C, Schoenfeld J, Seshagiri S, Simmons L, Singh J, Smith V, Stinson J, Vagts A, Vandlen R, Watanabe C, Wieand D, Woods K, Xie MH, Yansura D, Yi S, Yu G, Yuan J, Zhang M, Zhang Z, Goddard A, Wood WI, Godowski P, Gray A (2003) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Genome Res 13:2265-2270
-
(2003)
Genome Res
, vol.13
, pp. 2265-2270
-
-
Clark, H.F.1
Gurney, A.L.2
Abaya, E.3
Baker, K.4
Baldwin, D.5
Brush, J.6
Chen, J.7
Chow, B.8
Chui, C.9
Crowley, C.10
Currell, B.11
Deuel, B.12
Dowd, P.13
Eaton, D.14
Foster, J.15
Grimaldi, C.16
Gu, Q.17
Hass, P.E.18
Heldens, S.19
Huang, A.20
Kim, H.S.21
Klimowski, L.22
Jin, Y.23
Johnson, S.24
Lee, J.25
Lewis, L.26
Liao, D.27
Mark, M.28
Robbie, E.29
Sanchez, C.30
Schoenfeld, J.31
Seshagiri, S.32
Simmons, L.33
Singh, J.34
Smith, V.35
Stinson, J.36
Vagts, A.37
Vandlen, R.38
Watanabe, C.39
Wieand, D.40
Woods, K.41
Xie, M.H.42
Yansura, D.43
Yi, S.44
Yu, G.45
Yuan, J.46
Zhang, M.47
Zhang, Z.48
Goddard, A.49
Wood, W.I.50
Godowski, P.51
Gray, A.52
more..
-
14
-
-
0028326431
-
Three-dimensional solution structure of Escherichia coli periplasmic cyclophilin
-
Clubb RT, Ferguson SB, Walsh CT, Wagner G (1994) Three-dimensional solution structure of Escherichia coli periplasmic cyclophilin. Biochemistry 33:2761-2772
-
(1994)
Biochemistry
, vol.33
, pp. 2761-2772
-
-
Clubb, R.T.1
Ferguson, S.B.2
Walsh, C.T.3
Wagner, G.4
-
15
-
-
13444304367
-
The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33:294-296
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 294-296
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
16
-
-
0026755302
-
Structural and functional characterization of Escherichia coli peptidyl-prolyl cis-trans isomerases
-
Compton LA, Davis JM, Macdonald JR, Bächinger HP (1992) Structural and functional characterization of Escherichia coli peptidyl-prolyl cis-trans isomerases. Eur J Biochem 206:927-934
-
(1992)
Eur J Biochem
, vol.206
, pp. 927-934
-
-
Compton, L.A.1
Davis, J.M.2
Macdonald, J.R.3
Bächinger, H.P.4
-
17
-
-
0001923233
-
Survey of new data and computer methods of analysis
-
Dayhoff MO (ed) National Biomedical Research Foundation, Silver Springs, MD
-
Dayhoff MO (1978) Survey of new data and computer methods of analysis. In: Dayhoff MO (ed) Atlas of protein sequence and structure. National Biomedical Research Foundation, Silver Springs, MD, pp 2-8
-
(1978)
Atlas of Protein Sequence and Structure
, pp. 2-8
-
-
Dayhoff, M.O.1
-
18
-
-
0021760092
-
A comprehensive set of sequence analysis programs for VAX
-
Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for VAX. Nucleic Acids Res 12:387-395
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 387-395
-
-
Devereux, J.1
Haeberli, P.2
Smithies, O.3
-
19
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
20
-
-
0034888692
-
Phylogeny of Streptomyces species and evidence for horizontal transfer of entire and partial antibiotic gene clusters
-
Egan S, Wiener P, Kallifidas D, Wellington EM (2001) Phylogeny of Streptomyces species and evidence for horizontal transfer of entire and partial antibiotic gene clusters. Antonie Van Leeuwenhoek 79:127-133
-
(2001)
Antonie Van Leeuwenhoek
, vol.79
, pp. 127-133
-
-
Egan, S.1
Wiener, P.2
Kallifidas, D.3
Wellington, E.M.4
-
21
-
-
0003437299
-
-
Distributed by the author. Department of Genetics, University of Washington, Seattle
-
Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle
-
(1993)
PHYLIP (Phylogeny Inference Package) Version 3.5c
-
-
Felsenstein, J.1
-
22
-
-
0037250391
-
HGT-DB: A database of putative horizontally transferred genes in prokaryotic complete genomes
-
Garcia-Vallve S, Guzman E, Montero MA, Romeu A (2003) HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes. Nucleic Acids Res 31:187-189
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 187-189
-
-
Garcia-Vallve, S.1
Guzman, E.2
Montero, M.A.3
Romeu, A.4
-
23
-
-
0041172666
-
Cyclophilin and trigger factor from Bacillus subtilis catalyze in vitro protein folding and are necessary for viability under starvation conditions
-
Göthel SF, Scholz C, Schmid FX, Marahiel MA (1998) Cyclophilin and trigger factor from Bacillus subtilis catalyze in vitro protein folding and are necessary for viability under starvation conditions. Biochemistry 37:13392-13399
-
(1998)
Biochemistry
, vol.37
, pp. 13392-13399
-
-
Göthel, S.F.1
Scholz, C.2
Schmid, F.X.3
Marahiel, M.A.4
-
24
-
-
0032926319
-
Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts
-
Göthel SF, Marahiel A (1999) Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts. Cell Mol Life Sci 55:423-436
-
(1999)
Cell Mol Life Sci
, vol.55
, pp. 423-436
-
-
Göthel, S.F.1
Marahiel, A.2
-
25
-
-
0031473847
-
SWISS-MODEL and the Swiss-Pdb-Viewer: An environment for comparative protein modeling
-
Guex N, Peitsch MC (1997) SWISS-MODEL and the Swiss-Pdb-Viewer: an environment for comparative protein modeling. Electrophoresis 18:2714-2723
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
27
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696-704
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
28
-
-
0025756590
-
Two distinct forms of peptidylprolyl-cis-trans-isomerase are expressed separately in periplasmic and citoplasmic compartments of Escherichia coli Cells
-
Hayano T, Takahashi N, Kato S, Maki N, Suzuki M (1991) Two distinct forms of peptidylprolyl-cis-trans-isomerase are expressed separately in periplasmic and citoplasmic compartments of Escherichia coli Cells. Biochemistry 30:3041-3048
-
(1991)
Biochemistry
, vol.30
, pp. 3041-3048
-
-
Hayano, T.1
Takahashi, N.2
Kato, S.3
Maki, N.4
Suzuki, M.5
-
29
-
-
7044220836
-
X-ray structure of peptidyl-prolyl cis-trans isomerase A from Mycobacterium tuberculosis
-
Henriksson LM, Johansson P, Unge T, Mowbray SL (2004) X-ray structure of peptidyl-prolyl cis-trans isomerase A from Mycobacterium tuberculosis. Eur J Biochem 271:4107-4113
-
(2004)
Eur J Biochem
, vol.271
, pp. 4107-4113
-
-
Henriksson, L.M.1
Johansson, P.2
Unge, T.3
Mowbray, S.L.4
-
30
-
-
0026674120
-
Peptidyl-prolyl cis-trans isomerase from Bacillus subtilis. A prokaryotic enzyme that is highly sensitive to cyclosporin A
-
Herrler M, Bang H, Brune K, Fisher G, Marahiel MA (1992) Peptidyl-prolyl cis-trans isomerase from Bacillus subtilis. A prokaryotic enzyme that is highly sensitive to cyclosporin A. FEBS Lett 3:231-234
-
(1992)
FEBS Lett
, vol.3
, pp. 231-234
-
-
Herrler, M.1
Bang, H.2
Brune, K.3
Fisher, G.4
Marahiel, M.A.5
-
31
-
-
0028217756
-
Cloning and characterization of ppiB, a Bacillus subtilis gene which encodes a cyclosporinA-sensitive peptidyl-prolyl cis-trans isomerase
-
Herrler M, Bang H, Marahiel MA (1994) Cloning and characterization of ppiB, a Bacillus subtilis gene which encodes a cyclosporinA-sensitive peptidyl-prolyl cis-trans isomerase. Mol Microbiol 11:1073-1083
-
(1994)
Mol Microbiol
, vol.11
, pp. 1073-1083
-
-
Herrler, M.1
Bang, H.2
Marahiel, M.A.3
-
32
-
-
0030861751
-
Programmed cell death in prokaryotes
-
Hochman A (1997) Programmed cell death in prokaryotes. Crit Rev Microbiol 23:207-214
-
(1997)
Crit Rev Microbiol
, vol.23
, pp. 207-214
-
-
Hochman, A.1
-
33
-
-
0003728297
-
-
John Innes Foundation, Norwich
-
Hopwood DA, Bibb MJ, Chater KF, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (1985) Genetic manipulation of Streptomyces. A laboratory manual. John Innes Foundation, Norwich
-
(1985)
Genetic Manipulation of Streptomyces. A Laboratory Manual
-
-
Hopwood, D.A.1
Bibb, M.J.2
Chater, K.F.3
Kieser, H.M.4
Lydiate, D.J.5
Smith, C.P.6
Ward, J.M.7
Schrempf, H.8
-
35
-
-
0038561132
-
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis
-
Ikeda H, Ishikawa J, Hanamoto A, Shinose M, Kikuchi H, Shiba T, Sakaki Y, Hattori M, Omura S (2003) Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. Nat. Biotechnol. 21:526-531
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 526-531
-
-
Ikeda, H.1
Ishikawa, J.2
Hanamoto, A.3
Shinose, M.4
Kikuchi, H.5
Shiba, T.6
Sakaki, Y.7
Hattori, M.8
Omura, S.9
-
36
-
-
0033736147
-
Immunophilins: Switched on protein binding domains
-
Ivery MTG (2000) Immunophilins: switched on protein binding domains. Med Res Rev 20:452-484
-
(2000)
Med Res Rev
, vol.20
, pp. 452-484
-
-
Ivery, M.T.G.1
-
37
-
-
0031572824
-
A protease-free assay for peptidyl prolyl cis/trans isomerases using standard peptide substrates
-
Janowski B, Wollner S, Schutkowski M, Fischer G (1997) A protease-free assay for peptidyl prolyl cis/trans isomerases using standard peptide substrates. Anal Biochem 252:299-307
-
(1997)
Anal Biochem
, vol.252
, pp. 299-307
-
-
Janowski, B.1
Wollner, S.2
Schutkowski, M.3
Fischer, G.4
-
38
-
-
2342535714
-
Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria
-
Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T (2004) Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria. Appl Environ Microbiol 70:1135-1144
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1135-1144
-
-
Kawase, T.1
Saito, A.2
Sato, T.3
Kanai, R.4
Fujii, T.5
Nikaidou, N.6
Miyashita, K.7
Watanabe, T.8
-
39
-
-
0011436635
-
The budding bacteria, Pirellula and Planctomyces, with a typical 16S-rRNA and absence of peptidoglycan, show eubacterial phospholipids and unusually high proportions of long-chain beta-hydroxy fatty acids in the lipopolysaccharide lipid A
-
Kerger BD, Mancuso CA, Nichols PD, White DC, Langworthy T, Sittig M, Schlessner H, Hirsch P (1988) The budding bacteria, Pirellula and Planctomyces, with a typical 16S-rRNA and absence of peptidoglycan, show eubacterial phospholipids and unusually high proportions of long-chain beta-hydroxy fatty acids in the lipopolysaccharide lipid A. Arch Microbiol 149:255-260
-
(1988)
Arch Microbiol
, vol.149
, pp. 255-260
-
-
Kerger, B.D.1
Mancuso, C.A.2
Nichols, P.D.3
White, D.C.4
Langworthy, T.5
Sittig, M.6
Schlessner, H.7
Hirsch, P.8
-
40
-
-
0027959745
-
A gene of Acinetobacter calcoaceticus BD413 encodes a periplasmic peptidyl-prolyl cis-trans isomerase of the cyclophilin subclass that is not essential for growth
-
Kok RG, Christoffels VM, Vosman B, Hellingwerf KJ (1994) A gene of Acinetobacter calcoaceticus BD413 encodes a periplasmic peptidyl-prolyl cis-trans isomerase of the cyclophilin subclass that is not essential for growth. Biochim Biophys Acta 1219:601-606
-
(1994)
Biochim Biophys Acta
, vol.1219
, pp. 601-606
-
-
Kok, R.G.1
Christoffels, V.M.2
Vosman, B.3
Hellingwerf, K.J.4
-
41
-
-
0029970349
-
The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer
-
Konno M, Ito M, Hayano T, Takahashi N (1996) The substrate-binding site in Escherichia coli cyclophilin A preferably recognizes a cis-proline isomer or a highly distorted form of the trans isomer. J Mol Biol 256:897-908
-
(1996)
J Mol Biol
, vol.256
, pp. 897-908
-
-
Konno, M.1
Ito, M.2
Hayano, T.3
Takahashi, N.4
-
42
-
-
0036316720
-
Origin and evolution of eukaryotic apoptosis: The bacterial connection
-
Koonin EV, Aravind L (2002a) Origin and evolution of eukaryotic apoptosis: the bacterial connection. Cell Death Differ 9:394-404
-
(2002)
Cell Death Differ
, vol.9
, pp. 394-404
-
-
Koonin, E.V.1
Aravind, L.2
-
43
-
-
0036499652
-
Classification of the caspase-hemoglobinase fold: Detection of new families and implications for the origin of the eukaryotic separins
-
Koonin EV, Aravind L (2002b) Classification of the caspase-hemoglobinase fold: detection of new families and implications for the origin of the eukaryotic separins. Proteins 46:355-367
-
(2002)
Proteins
, vol.46
, pp. 355-367
-
-
Koonin, E.V.1
Aravind, L.2
-
44
-
-
0014949207
-
Cleavage of the structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli UK (1970) Cleavage of the structural proteins during the assembly of the head of bacteriophage T4. Nature 227:222-232
-
(1970)
Nature
, vol.227
, pp. 222-232
-
-
Laemmli, U.K.1
-
45
-
-
0031722706
-
Novel families of putative protein kinases in bacteria and archaea: Evolution of the "eukaryotic" protein kinase superfamily
-
Leonard CJ, Aravind L, Koonin EV (1998) Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily. Genome Res 8:1038-1047
-
(1998)
Genome Res
, vol.8
, pp. 1038-1047
-
-
Leonard, C.J.1
Aravind, L.2
Koonin, E.V.3
-
46
-
-
0034937657
-
Cell compartmentalisation in planctomycetes: Novel types of structural organisation for the bacterial cell
-
Lindsay MR, Webb RI, Strous M, Jetten MSM, Butler MK, Forde RJ, Fuerst JA (2001) Cell compartmentalisation in planctomycetes: novel types of structural organisation for the bacterial cell. Arch Microbiol 175:413-429
-
(2001)
Arch Microbiol
, vol.175
, pp. 413-429
-
-
Lindsay, M.R.1
Webb, R.I.2
Strous, M.3
Jetten, M.S.M.4
Butler, M.K.5
Forde, R.J.6
Fuerst, J.A.7
-
47
-
-
0025325366
-
Peptidyl-prolyl cis-trans-isomerase from Escherichia coli: A periplasmic homologue of cyclophilin that is not inhibited by cyclosporin A
-
Liu J, Walsh CT (1990) Peptidyl-prolyl cis-trans-isomerase from Escherichia coli: a periplasmic homologue of cyclophilin that is not inhibited by cyclosporin A. Proc Natl Acad Sci USA 87:4028-4032
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4028-4032
-
-
Liu, J.1
Walsh, C.T.2
-
48
-
-
0025755354
-
Human and Escherichia coli cyclophilins: Sensitivity to inhibition by the immunosuppressant cyclosporin A correlates with a specific tryptophan residue
-
Liu J, Chen CM, Walsh CT (1991) Human and Escherichia coli cyclophilins: sensitivity to inhibition by the immunosuppressant cyclosporin A correlates with a specific tryptophan residue. Biochemistry 30:2306-2310
-
(1991)
Biochemistry
, vol.30
, pp. 2306-2310
-
-
Liu, J.1
Chen, C.M.2
Walsh, C.T.3
-
51
-
-
4143070447
-
Cloning and characterization of a Streptomyces antibioticus ATCC11891 cyclophilin related to Gram negative bacteria cyclophilins
-
Manteca A, Kamphausen T, Fanghanel J, Fischer G, Sanchez J (2004) Cloning and characterization of a Streptomyces antibioticus ATCC11891 cyclophilin related to Gram negative bacteria cyclophilins. FEBS Lett 572:19-26
-
(2004)
FEBS Lett
, vol.572
, pp. 19-26
-
-
Manteca, A.1
Kamphausen, T.2
Fanghanel, J.3
Fischer, G.4
Sanchez, J.5
-
52
-
-
32644436271
-
Cytological and biochemical evidence for an early cell dismantling event in surface cultures of Streptomyces antibioticus
-
Manteca A, Fernandez M, Sanchez J (2006) Cytological and biochemical evidence for an early cell dismantling event in surface cultures of Streptomyces antibioticus. Res Microbiol 157:143-152
-
(2006)
Res Microbiol
, vol.157
, pp. 143-152
-
-
Manteca, A.1
Fernandez, M.2
Sanchez, J.3
-
53
-
-
10844297902
-
Streptomyces albus isolated from a human actinomycetoma and characterized by molecular techniques
-
Martin MC, Manteca A, Castillo ML, Vazquez F, Mendez FJ (2004) Streptomyces albus isolated from a human actinomycetoma and characterized by molecular techniques. J Clin Microbiol 42:5957-5960
-
(2004)
J Clin Microbiol
, vol.42
, pp. 5957-5960
-
-
Martin, M.C.1
Manteca, A.2
Castillo, M.L.3
Vazquez, F.4
Mendez, F.J.5
-
54
-
-
0001077914
-
Archaeal peptidyl prolyl cis-trans isomerases (PPIases)
-
Maruyama T, Furutani M (2000) Archaeal peptidyl prolyl cis-trans isomerases (PPIases). Front Biosci 5:821-836
-
(2000)
Front Biosci
, vol.5
, pp. 821-836
-
-
Maruyama, T.1
Furutani, M.2
-
55
-
-
0028200605
-
The medically important aerobic actinomycetes: Epidemiology and microbiology
-
McNeil MM, Brown JM (1994) The medically important aerobic actinomycetes: epidemiology and microbiology. Clin Microbiol Rev 7:357-417
-
(1994)
Clin Microbiol Rev
, vol.7
, pp. 357-417
-
-
McNeil, M.M.1
Brown, J.M.2
-
57
-
-
0036731845
-
Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various Streptomyces species
-
Metsä-Ketelä M, Halo L, Munukka E, Hakala J, Mäntsälä P, Ylihonko K (2002) Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16S ribosomal DNA genes from various Streptomyces species. Appl Environ Microbiol 68:4472-4479
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4472-4479
-
-
Metsä-Ketelä, M.1
Halo, L.2
Munukka, E.3
Hakala, J.4
Mäntsälä, P.5
Ylihonko, K.6
-
58
-
-
0027772159
-
X-ray structure of a monomeric cyclophilin A-cyclosporin A crystal complex at 2.1 A resolution
-
Mikol V, Kallen J, Pflugl G, Walkinshaw MD (1993) X-ray structure of a monomeric cyclophilin A-cyclosporin A crystal complex at 2.1 A resolution. J Mol Biol 234:1119-1130
-
(1993)
J Mol Biol
, vol.234
, pp. 1119-1130
-
-
Mikol, V.1
Kallen, J.2
Pflugl, G.3
Walkinshaw, M.D.4
-
59
-
-
0028306243
-
Cyclosporin A sensitive peptidyl-prolyl cis-trans isomerase in a halophilic archaeum, Halobacterium cutirubrum
-
Nagashima K, Mitsuhashi S, Kamino K, Maruyama T (1994) Cyclosporin A sensitive peptidyl-prolyl cis-trans isomerase in a halophilic archaeum, Halobacterium cutirubrum. Biochem Biophys Res Commun 198:466-472
-
(1994)
Biochem Biophys Res Commun
, vol.198
, pp. 466-472
-
-
Nagashima, K.1
Mitsuhashi, S.2
Kamino, K.3
Maruyama, T.4
-
60
-
-
0033575318
-
Purification, characterization, and role of nucleases and serine proteases in Streptomyces differentiation
-
Nicieza GR, Huergo J, Connolly BA, Sanchez J (1999) Purification, characterization, and role of nucleases and serine proteases in Streptomyces differentiation. J Biol Chem 274:20366-20375
-
(1999)
J Biol Chem
, vol.274
, pp. 20366-20375
-
-
Nicieza, G.R.1
Huergo, J.2
Connolly, B.A.3
Sanchez, J.4
-
61
-
-
4143054574
-
Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level
-
Nishio Y, Nakamura Y, Usuda Y, Sugimoto S, Matsui K, Kawarabayasi Y, Kikuchi H, Gojobori T, Ikeo K (2004) Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level. Mol Biol Evol. 21:1683-1691
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1683-1691
-
-
Nishio, Y.1
Nakamura, Y.2
Usuda, Y.3
Sugimoto, S.4
Matsui, K.5
Kawarabayasi, Y.6
Kikuchi, H.7
Gojobori, T.8
Ikeo, K.9
-
62
-
-
0028171822
-
The gene encoding the periplasmic cyclophilin homologueue, PPIase A, in Escherichia coli, is expressed from four promoters, three of which are activated by the cAMP-CRP complex and negatively regulated by the CytR repressor
-
Norregaard-Madsen M, Mygind B, Pedersen R, Valentin-Hansen P, Sogaard-Andersen L (1994) The gene encoding the periplasmic cyclophilin homologueue, PPIase A, in Escherichia coli, is expressed from four promoters, three of which are activated by the cAMP-CRP complex and negatively regulated by the CytR repressor. Mol Microbiol 14:989-997
-
(1994)
Mol Microbiol
, vol.14
, pp. 989-997
-
-
Norregaard-Madsen, M.1
Mygind, B.2
Pedersen, R.3
Valentin-Hansen, P.4
Sogaard-Andersen, L.5
-
63
-
-
0026731248
-
Streptomycetes possess peptidyl-prolyl cis-trans isomerases that strongly resemble cyclophilins from eukaryotic organisms
-
Pahl A, Uhlein M, Bang H, Schlumbohm W, Keller U (1992) Streptomycetes possess peptidyl-prolyl cis-trans isomerases that strongly resemble cyclophilins from eukaryotic organisms. Mol Microbiol 6:3551-3558
-
(1992)
Mol Microbiol
, vol.6
, pp. 3551-3558
-
-
Pahl, A.1
Uhlein, M.2
Bang, H.3
Schlumbohm, W.4
Keller, U.5
-
64
-
-
0031018109
-
ScCypB is a novel second cytosolic cyclophilin from Streptomyces chrysomallus which is phylogenetically distant from ScCypA
-
Pahl A, Gewies A, Keller U (1997) ScCypB is a novel second cytosolic cyclophilin from Streptomyces chrysomallus which is phylogenetically distant from ScCypA. Microbiology 143:117-126
-
(1997)
Microbiology
, vol.143
, pp. 117-126
-
-
Pahl, A.1
Gewies, A.2
Keller, U.3
-
66
-
-
0038039713
-
Eukaryotic-type protein kinases in Streptomyces coelicolor: Variations on a common theme
-
Petrickova K, Petricek M (2003) Eukaryotic-type protein kinases in Streptomyces coelicolor: variations on a common theme. Microbiology 149:1609-1621
-
(2003)
Microbiology
, vol.149
, pp. 1609-1621
-
-
Petrickova, K.1
Petricek, M.2
-
67
-
-
0031426188
-
Characterization of a periplasmic peptidyl-prolyl cis-trans isomerase in Erwinia chrysanthemi
-
Pissavin C, Hugouvieux-Cotte-Pattat N (1997) Characterization of a periplasmic peptidyl-prolyl cis-trans isomerase in Erwinia chrysanthemi. FEMS Microbiol Lett 157:59-65
-
(1997)
FEMS Microbiol Lett
, vol.157
, pp. 59-65
-
-
Pissavin, C.1
Hugouvieux-Cotte-Pattat, N.2
-
68
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
69
-
-
0029658035
-
A cyclophilin-like peptidyl-prolyl cis/trans isomerase from Legionella pneumophila: Characterization, molecular cloning and overexpression
-
Schmidt B, Tradler T, Rahfeld JU, Ludwing B, Jain B, Mann K, Rücknagel KP, Janowski B, Schierhorn A, Küllertz G, Hacker J, Fischer G (1996) A cyclophilin-like peptidyl-prolyl cis/trans isomerase from Legionella pneumophila: characterization, molecular cloning and overexpression. Mol Microbiol 21:1147-1160
-
(1996)
Mol Microbiol
, vol.21
, pp. 1147-1160
-
-
Schmidt, B.1
Tradler, T.2
Rahfeld, J.U.3
Ludwing, B.4
Jain, B.5
Mann, K.6
Rücknagel, K.P.7
Janowski, B.8
Schierhorn, A.9
Küllertz, G.10
Hacker, J.11
Fischer, G.12
-
70
-
-
0024707288
-
Drosophila ninaA gene encodes an eye-specific cyclophilin (cyclosporine A binding protein)
-
Schneuwly S, Shortridge RD, Larrivee DC, Ono T, Ozaki M, Pak WL (1989) Drosophila ninaA gene encodes an eye-specific cyclophilin (cyclosporine A binding protein). Proc Natl Acad Sci USA 86:5390-5394
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 5390-5394
-
-
Schneuwly, S.1
Shortridge, R.D.2
Larrivee, D.C.3
Ono, T.4
Ozaki, M.5
Pak, W.L.6
-
71
-
-
0025758537
-
Catalysis of protein folding by cyclophilins from different species
-
Schönbrunner ER, Mayer S, Tropschug M, Fischer G, Takahashi N, Schmid FX (1991) Catalysis of protein folding by cyclophilins from different species. J Biol Chem 266:3635
-
(1991)
J Biol Chem
, vol.266
, pp. 3635
-
-
Schönbrunner, E.R.1
Mayer, S.2
Tropschug, M.3
Fischer, G.4
Takahashi, N.5
Schmid, F.X.6
-
73
-
-
4344568532
-
Comparative analysis of eukaryotic-type protein phosphatases in two streptomycete genomes
-
Shi L, Zhang W (2004) Comparative analysis of eukaryotic-type protein phosphatases in two streptomycete genomes. Microbiology 150:2247-2256
-
(2004)
Microbiology
, vol.150
, pp. 2247-2256
-
-
Shi, L.1
Zhang, W.2
-
74
-
-
0028864461
-
A ribosome-associated peptidyl-prolyl cis/-trans isomerase identified as the trigger factor
-
Stoller G, Rucknagel KP, Nierhaus KH, Schimid FX, Fischer G, Rahfeld JU (1995) A ribosome-associated peptidyl-prolyl cis/-trans isomerase identified as the trigger factor. EMBO J 14:4939-4948
-
(1995)
EMBO J
, vol.14
, pp. 4939-4948
-
-
Stoller, G.1
Rucknagel, K.P.2
Nierhaus, K.H.3
Schimid, F.X.4
Fischer, G.5
Rahfeld, J.U.6
-
76
-
-
0032902755
-
Two distinct mechanisms cause heterogeneity of 16S rRNA
-
Ueda K, Seki T, Kudo T, Yoshida T, Kataoka M (1999) Two distinct mechanisms cause heterogeneity of 16S rRNA. J Bacteriol 181:78-82
-
(1999)
J Bacteriol
, vol.181
, pp. 78-82
-
-
Ueda, K.1
Seki, T.2
Kudo, T.3
Yoshida, T.4
Kataoka, M.5
-
78
-
-
0032170134
-
Evidence for transfer of antibiotic-resistance genes in soil populations of streptomycetes
-
Wiener P, Egan S, Huddleston AS, Wellington EM (1998) Evidence for transfer of antibiotic-resistance genes in soil populations of streptomycetes. Mol Ecol 7:1205-1216
-
(1998)
Mol Ecol
, vol.7
, pp. 1205-1216
-
-
Wiener, P.1
Egan, S.2
Huddleston, A.S.3
Wellington, E.M.4
-
79
-
-
0028963606
-
Programmed cell death in bacterial populations
-
Yarmolinsky MB (1995) Programmed cell death in bacterial populations. Science 267:836-837
-
(1995)
Science
, vol.267
, pp. 836-837
-
-
Yarmolinsky, M.B.1
-
80
-
-
0035340288
-
Sanglifehrin A, a novel cyclophilin-binding immunosuppressant, inhibits IL-2-dependent T cell proliferation at the G1 phase of the cell cycle
-
Zhang LH, Liu JO (2001) Sanglifehrin A, a novel cyclophilin-binding immunosuppressant, inhibits IL-2-dependent T cell proliferation at the G1 phase of the cell cycle. J Immunol 166:5611-5618
-
(2001)
J Immunol
, vol.166
, pp. 5611-5618
-
-
Zhang, L.H.1
Liu, J.O.2
|