Formation of peroxisomes: Present and past

Biochimica et Biophysica Acta - Molecular Cell Research

Volumn 1763, Issue 12, 2006, Pages 1647-1654

  Tabak, H F ^a,b,c   Hoepfner, D ^d   Zand, A v d ^a   Geuze, H J ^b   Braakman, I ^a   Huynen, M A ^e  

^a UTRECHT UNIVERSITY   (Netherlands)

^b UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

^c UTRECHT UNIVERSITY   (Netherlands)

^d NOVARTIS PHARMA AG   (Switzerland)

^e RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

Endoplasmic reticulum; Evolution; Peroxisome

Indexed keywords

ABC TRANSPORTER; GUANOSINE TRIPHOSPHATASE; MEMBRANE PROTEIN; PERIPHERAL MYELIN PROTEIN 70; PROTEIN PEX3P;

BIOGENESIS; CELL DIVISION; CELL ORGANELLE; CELL POPULATION; CELLULAR DISTRIBUTION; ENDOPLASMIC RETICULUM; EUKARYOTIC CELL; GENETIC SCREENING; IMMUNOELECTRON MICROSCOPY; MOLECULAR EVOLUTION; NONHUMAN; PEROXISOME; PRIORITY JOURNAL; PROTEIN LOCALIZATION; REVIEW; THREE DIMENSIONAL IMAGING;

ANIMALS; ENDOPLASMIC RETICULUM; EVOLUTION; HUMANS; PEROXISOMES; PHYLOGENY;

EUKARYOTA;

EID: 33845308244     PISSN: 01674889     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbamcr.2006.08.045     Document Type: Review

References (53)

1. Palade G.E. Membrane biogenesis: an overview. Methods Enzymol. 96 (1983) xxix-lv
2. Nunnari J., and Walter P. Regulation of organelle biogenesis. Cell 84 (1996) 389-394
3. Schatz G. Jeff's View on Science and Scientists (2006), Elsevier, Amsterdam
4. Rapoport T.A., Jungnickel B., and Kutay U. Protein transport across the eukaryotic endoplasmic reticulum and bacterial inner membranes. Annu. Rev. Biochem. 65 (1996) 271-303
5. Daum G., and Vance J.E. Import of lipids into mitochondria. Prog. Lipid. Res. 36 (1997) 103-130
6. Voelker D.R. Interorganelle transport of aminoglycerophospholipids. Biochim. Biophys. Acta 1486 (2000) 97-107
7. Sprong H., van der Sluijs P., and van Meer G. How proteins move lipids and lipids move proteins. Nat. Rev., Mol. Cell Biol. 2 (2001) 504-513
8. Novikoff P.M., and Novikoff A.B. Peroxisomes in absorptive cells of mammalian small intestine. J. Cell Biol. 53 (1972) 532-560
9. Lazarow P.B., and Fujiki Y. Biogenesis of peroxisomes. Annu. Rev. Cell Biol. 1 (1985) 489-530
10. Subramani S. Components involved in peroxisome import, biogenesis, proliferation, turnover, and movement. Physiol. Rev. 78 (1998) 171-188
11. Lazarow P.B. Peroxisome biogenesis: advances and conundrums. Curr. Opin. Cell Biol. 15 (2003) 489-497
12. Tabak H.F., Murk J.L., Braakman I., and Geuze H.J. Peroxisomes start their life in the endoplasmic reticulum. Traffic 4 (2003) 512-518
13. Titorenko V.I., Ogrydziak D.M., and Rachubinski R.A. Four distinct secretory pathways serve protein secretion, cell surface growth, and peroxisome biogenesis in the yeast Yarrowia lipolytica. Mol. Cell. Biol. 17 (1997) 5210-5226
14. Geuze H.J., Murk J.L., Stroobants A.K., Griffith J.M., Kleijmeer M.J., Koster A.J., Verkleij A.J., Distel B., and Tabak H.F. Involvement of the endoplasmic reticulum in peroxisome formation. Mol. Biol. Cell 14 (2003) 2900-2907
15. Hettema E.H., Girzalsky W., van Den Berg M., Erdmann R., and Distel B. Saccharomyces cerevisiae pex3p and pex19p are required for proper localization and stability of peroxisomal membrane proteins. EMBO J. 19 (2000) 223-233
16. Hoepfner D., Schildknegt D., Braakman I., Philippsen P., and Tabak H.F. Contribution of the endoplasmic reticulum to peroxisome formation. Cell 122 (2005) 85-95
17. Tam Y.Y., Fagarasanu A., Fagarasanu M., and Rachubinski R.A. Pex3p initiates the formation of a preperoxisomal compartment from a subdomain of the endoplasmic reticulum in Saccharomyces cerevisiae. J. Biol. Chem. 280 (2005) 34933-34939
18. Baerends R.J., Faber K.N., Kram A.M., Kiel J.A., van der Klei I.J., and Veenhuis M. A stretch of positively charged amino acids at the N terminus of Hansenula polymorpha Pex3p is involved in incorporation of the protein into the peroxisomal membrane. J. Biol. Chem. 275 (2000) 9986-9995
19. Schekman R. Peroxisomes: another branch of the secretory pathway?. Cell 122 (2005) 1-2
20. South S.T., Sacksteder K.A., Li X., Liu Y., and Gould S.J. Inhibitors of COPI and COPII do not block PEX3-mediated peroxisome synthesis. J. Cell Biol. 149 (2000) 1345-1360
21. Voorn-Brouwer T., Kragt A., Tabak H.F., and Distel B. Peroxisomal membrane proteins are properly targeted to peroxisomes in the absence of COPI- and COPII-mediated vesicular transport. J. Cell. Sci. 114 (2001) 2199-2204
22. Marelli M., Smith J.J., Jung S., Yi E., Nesvizhskii A.I., Christmas R.H., Saleem R.A., Tam Y.Y., Fagarasanu A., Goodlett D.R., Aebersold R., Rachubinski R.A., and Aitchison J.D. Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane. J. Cell Biol. 167 (2004) 1099-1112
23. Li X., and Gould S.J. The dynamin-like GTPase DLP1 is essential for peroxisome division and is recruited to peroxisomes in part by PEX11. J. Biol. Chem. 278 (2003) 17012-17020
24. Koch A., Schneider G., Luers G.H., and Schrader M. Peroxisome elongation and constriction but not fission can occur independently of dynamin-like protein 1. J. Cell. Sci. 117 (2004) 3995-4006
25. Koch A., Thiemann M., Grabenbauer M., Yoon Y., McNiven M.A., and Schrader M. Dynamin-like protein 1 is involved in peroxisomal fission. J. Biol. Chem. 278 (2003) 8597-8605
26. Hoepfner D., van den Berg M., Philippsen P., Tabak H.F., and Hettema E.H. A role for Vps1p, actin, and the Myo2p motor in peroxisome abundance and inheritance in Saccharomyces cerevisiae. J. Cell Biol. 155 (2001) 979-990
27. Koch A., Yoon Y., Bonekamp N.A., McNiven M.A., and Schrader M. A role for Fis1 in both mitochondrial and peroxisomal fission in mammalian cells. Mol. Biol. Cell 16 (2005) 5077-5086
28. Kim P.R., Mulleb R.T., Schumann U., and Lippincott-Schwartz J. The origin and maintenance of mammalian peroxisomes involves a de novo PEX16-dependent pathway from the ER. J. Cell Biol. 173 (2006) 521-532
29. de Duve C. The peroxisome: a new cytoplasmic organelle. Proc. R. Soc. Lond., B Biol. Sci. 173 (1969) 71-83
30. de Duve C. The birth of complex cells. Sci. Am. 274 (1996) 50-57
31. de Duve C. Life Evolving (2002), Oxford University Press, Oxford
32. Gabaldon T., Snel B., van Zimmeren F., Hemrika W., Tabak H., and Huynen M.A. Origin and evolution of the peroxisomal proteome. Biol. Direct 1 (2006) 8
33. Schluter A., Fourcade S., Ripp R., Mandel J.L., Poch O., and Pujol A. The evolutionary origin of peroxisomes: an ER-peroxisome connection. Mol. Biol. Evol. 23 (2006) 838-845
34. Azevedo J.E., Costa-Rodrigues J., Guimaraes C.P., Oliveira M.E., and Sa-Miranda C. Protein translocation across the peroxisomal membrane. Cell Biochem. Biophys. 41 (2004) 451-468
35. Platta H.W., Grunau S., Rosenkranz K., Girzalsky W., and Erdmann R. Functional role of the AAA peroxins in dislocation of the cycling PTS1 receptor back to the cytosol. Nat. Cell Biol. 7 (2005) 817-822
36. Kurland C.G., and Andersson S.G. Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev. 64 (2000) 786-820
37. Gabaldon T., and Huynen M.A. Reconstruction of the proto-mitochondrial metabolism. Science 301 (2003) 609
38. Hannaert V., Saavedra E., Duffieux F., Szikora J.P., Rigden D.J., Michels P.A., and Opperdoes F.R. Plant-like traits associated with metabolism of Trypanosoma parasites. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 1067-1071
39. Birdsey G.M., Lewin J., Cunningham A.A., Bruford M.W., and Danpure C.J. Differential enzyme targeting as an evolutionary adaptation to herbivory in carnivora. Mol. Biol. Evol. 21 (2004) 632-646
40. Blobel G. Intracellular protein topogenesis. Proc. Natl. Acad. Sci. U. S. A. 77 (1980) 1496-1500
41. Cavalier-Smith T. The origin of eukaryotic and archaebacterial cells. Ann. N.Y. Acad. Sci. 503 (1987) 17-54
42. Maynard Smith J., and Szathmary E. The Origins of Life (2000), Oxford University Press, Oxford
43. Devos D., Dokudovskaya S., Alber F., Williams R., Chait B.T., Sali A., and Rout M.P. Components of coated vesicles and nuclear pore complexes share a common molecular architecture. PLoS Biol. 2 (2004) e380
44. Jekely G. Small GTPases and the evolution of the eukaryotic cell. Bioessays 25 (2003) 1129-1138
45. Embley T.M., and Martin W. Eukaryotic evolution, changes and challenges. Nature 440 (2006) 623-630
46. Gray M.W., Burger G., and Lang B.F. Mitochondrial evolution. Science 283 (1999) 1476-1481
47. Martin W., and Koonin E.V. Introns and the origin of nucleus-cytosol compartmentalization. Nature 440 (2006) 41-45
48. Lopez-Garcia P., and Moreira D. Selective forces for the origin of the eukaryotic nucleus. Bioessays 28 (2006) 525-533
49. Dyall S.D., Brown M.T., and Johnson P.J. Ancient invasions: from endosymbionts to organelles. Science 304 (2004) 253-257
50. Emanuelsson O., Elofsson A., von Heijne G., and Cristobal S. In silico prediction of the peroxisomal proteome in fungi, plants and animals. J. Mol. Biol. 330 (2003) 443-456
51. Opperdoes F.R., and Szikora J.P. In silico prediction of the glycosomal enzymes of Leishmania major and trypanosomes. Mol. Biochem. Parasitol. 147 (2006) 193-206
52. Baldauf S.L., Roger A.J., Wenk-Siefert I., and Doolittle W.F. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290 (2000) 972-977
53. Gonzalez E. Glycoproteins in the matrix of glyoxysomes in endosperm of castor bean seedlings. Plant Physiol. 80 (1986) 950-955