Regulation of organelle biogenesis

Cell

Volumn 84, Issue 3, 1996, Pages 389-394

  Nunnari, Jodi ^a,b   Walter, Peter ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL PROTEIN;

BIOGENESIS; CELL ORGANELLE; ENDOPLASMIC RETICULUM; LIPID TRANSPORT; NONHUMAN; PRIORITY JOURNAL; PROTEIN TARGETING; REGULATORY MECHANISM; REVIEW; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION;

SACCHAROMYCES CEREVISIAE;

EID: 0030040689     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)81283-0     Document Type: Review

References (73)

1. Ardail, D., Gasnier, F., Lerme, F., Simonot, C., Louisot, P., and Gateau-Roesch, O. (1993). Involvement of mitochondrial contact sites in the subcellular compartmentalization of phospholipid biosynthetic enzymes. J. Biol. Chem. 268, 25985-25992.
2. Arnold, C.E., and Wittrup, K.D. (1994). The stress response to loss of signal recognition particle function in Saccharomyces cerevisiae. J. Biol. Chem. 269, 30412-30418.
3. Blobel, G. (1980). Intracellular protein topogenesis. Proc. Natl. Acad. Sci. USA 77, 1496-1500.
4. Blobel, G., and Sabatini, D.D. (1971). Ribosome-membrane interactions in eukaryotic cells. In Biomembranes, L.A. Mason, ed. (New York: Plenum), pp. 193-195.
5. Bolender, B. (1974). Stereological analysis of the guinea pig pancreas. J. Cell Biol. 61, 269-287.
6. Brown, R.E. (1992). Spontaneous lipid transfer between organized lipid assemblies. Biochim. Biophys. Acta 1113, 375-389.
7. Chelstowska, A., and Butow, R. (1995). RTG genes in yeast that function in communication between mitochondria and the nucleus are also required for expression of genes encoding peroxisomal proteins. J. Biol. Chem. 270, 18141-18146.
8. Cox, J., Shamu, C., and Walter, P. (1993). Transcriptional induction of genes encoding endoplasmic reticulum resident proteins requires a transmembrane protein kinase. Cell 73, 1197-1206.
9. Daum, G., and Paltauf, F. (1990). Lipid transport in microorganisms. Experientia 46, 586-592.
10. Denis, C., and Young, E. (1983). Isolation and characterization of the positive regulatory gene ADR1 from Saccharomyces cerevisiae. Mol. Cell. Biol. 3, 360-370.
11. Einerhand, A.W.C., Leij, I.V.D., Kos, W.T., Distel, B., and Tabak, H.F. (1992). Transcriptional regulation of genes encoding proteins involved in biogenesis of peroxisomes in Saccharomyces cerevisiae. Cell Biochem. Function 10, 185-191.
12. Einerhand, A.W.C., Kos, W.T., Distel, B., and Tabak, H.F. (1993). Characterization of a transcriptional control element involved in proliferation of peroxisomes in yeast in response to oleate. Eur. J. Biochem. 214, 323-331.
13. Filipits, M., Simon, M., Rapatz, W., Hamilton, B., and Ruis, H. (1993). A Saccharomyces cerevisiae upstream activating sequence mediates induction of peroxisome proliferation by fatty acids. Gene 132, 49-55.
14. Forsburg, S., and Guarente, L. (1989). Communication between mitochondria and the nucleus in regulation of cytochrome genes in the yeast Saccharomyces cerevisiae. Annu. Rev. Cell Biol. 5, 153-180.
15. Gratzer, S., Lithgow, T., Bauer, R.E., Lamping, E., Paltauf, F., Kohlwein, S.D., Haucke, V., Junne, T., Schatz, G., and Hortz, M. (1995). Mas37p, a novel receptor subunit for protein import into mitochondria. J. Cell Biol. 129, 25-34.
16. Green, S., and Wahli, W. (1994). Peroxisome proliferator-activated receptors: finding the orphan a home. Mol. Cell. Endocrinol. 100, 149-153.
17. Hachiya, N., Mihara, K., Suda, K., Horst, M., Schatz, G., and Lithgow, T. (1995). Reconstitution of the initial steps of mitochondrial import. Nature 376, 705.
18. Hann, B.C., and Walter, P. (1991). The signal recognition particle in S. cerevisiae. Cell 67, 131-144.
19. Hansen, W., Garcia, P.D., and Walter, P. (1986). In vitro protein translocation across the yeast endoplasmic reticulum: ATP-dependent post-translational translocation of the prepro-a-factor. Cell 45, 397-406.
20. Hill, C., and Treisman, R. (1995). Transcriptional regulation by extra-cellular signals: mechanisms and specificity. Cell 80, 199-211.
21. Hood, D., Balaban, A., Connor, M., Craig, E., Nishio, M., Rezvani, M., and Takahashi, M. (1994). Mitochondrial biogenesis in striated muscle. Can. J. Appl. Physiol. 19, 12-48.
22. Jelsema, C.L., and Morre, D.J. (1978). Distribution of phospholipid biosynthetic enzymes among cell components of rat liver. J. Biol. Chem. 253, 7960-7971.
23. Johnston, M., and Carlson, M. (1992). Regulation of carbon and phosphate utilization. In The Molecular and Cellular Biology of the Yeast Saccaromyces: Gene Expression, E. Jones, J. Pringle, and J. Broach, eds. (Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press), pp. 193-281.
24. Kiebler, M., Keil, P., Schneider, H., van der Klei, I.J., Pfanner, K., and Neupert, W. (1993). The mitochondrial receptor complex: a central role of MOM22 in mediating preprotein transfer from receptors to the general insertion pore. Cell 74, 483-492.
25. Kos, W., Kal, A., van Wilpe, S., and Tabak, H. (1995). Expression of genes encoding peroxisomal proteins in Saccaromyces cerevisiae is regulated by different circuits of transcriptional control. Biochim. Biophys. Acta, in press.
26. Kozutsumi, Y., Segal, M., Normington, K., Gething, M., and Sambrook, J. (1988). The presence of malfolded proteins inthe endoplasmic reticulum signals the induction of glucose-regulated proteins. Nature 332, 462-464.
27. Lewin, A., Hines, V., and Small, G. (1990). Citrate synthase encoded by the CIT2 gene of Saccharomyces cerevisiae is peroxisomal. Mol. Cell. Biol. 10, 1399-1405.
28. Liao, X., and Butow, R. (1993). RTG1 and RTG2: two genes required for a novel path of communication from mitochondria to the nucleus. Cell 72, 61-71.
29. Liao, X., Small, W., Srere, P., and Butow, R. (1991). Intramitochondrial functions regulate nonmitochondrial citrate synthase (CIT2) expression in Saccharomyces cerevisiae. Mol. Cell. Biol. 11, 38-46.
30. Lithgow, T., Jumme, T., Suda, K., Gratzer, S., and Schatz, G. (1994). The mitochondrial outer membrane protein Mass22p is essential for protein import and viability of yeast. Proc. Natl. Acad. Sci. USA 91, 11973-11977.
31. Lithgow, T., Glick, B.S., and Schatz, G. (1995). The protein import receptor of mitochondria. Trends Biochem. Sci. 20, 98-101.
32. Mori, K., Sant, A., Kohno, K., Normington, K., Gething, M., and Sambrook, J. (1992). A 22 bp cis-acting element is necessary and sufficient for the induction of the yeast KAR2 (BiP) gene by unfolded proteins. EMBO J. 11, 2583-2593.
33. +/CDC28-related kinase activity is required for signaling from the ER to the nucleus. Cell 74, 743-756.
34. Nikawa, J., and Yamashita, S. (1992). IRE1 encodes a putative protein kinase containing a membrane-spanning domain and is required for inositol phototrophy in Saccharomyces cerevisiae. Mol. Microbiol. 6, 1441-1446.
35. Normington, K., Kohno, K., Kozutsumi, Y., Gething, M., and Sambrook, J. (1989). S. cerevisiae encodes an essential protein homologous in sequence and function to mammalian BiP. Cell 57, 1223-1236.
36. Ogg, S., Poritz, M., and Walter, P. (1992). The signal recognition particle receptor is important for growth and protein secretion in Saccharomyces cerevisiae. Mol. Biol. Cell 3, 895-911.
37. Palade, G. (1975). Intracellular aspects of protein secretion. Science 189, 347-358.
38. Palade, G. (1983). Membrane biogenesis: an overview. Meth. Enzymol. 96, 29-55.
39. Pfanner, N., Craig, E., and Meijer, M. (1994). The protein import machinery of the mitochondrial inner membrane. Trends Biochem. Sci. 19, 368-372.
40. Plautauf, F., Kohlwein, S., and Henry, S. (1992). Regulation and compartmentalization of lipid synthesis in yeast. In The Molecular and Cellular Biology of the Yeast Saccharomyces: Gene Expression, E. Jones, J. Pringle, and J. Broach, eds. (Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press), pp. 415-500.
41. Purdue, P.E., and Lazarow, P.B. (1994). Peroxisomal biogenesis: multiple pathways of protein import. J. Biol. Chem. 269, 30065-30068.
42. Rachubinski, R.A., and Subramani, S. (1995). How proteins penetrate peroxisomes. Cell 83, 525-528.
43. Rapoport, T.A. (1992). Transport of proteins across the endoplasmic reticulum membrane. Science 258, 931-936.
44. Resendez, E.J., Wooden, S., and Lee, A. (1988). Identification of highly conserved regulatory domains and protein-binding sites in the promoters of the rat and human genes encoding the stress-inducible 78-kilodalton glucose-regulated protein. Mol. Cell. Biol. 8, 4579-4584.
45. Rose, M., Misra, L., and Vogel, J. (1989). KAR2, a karyogamy gene, is the yeast homolog of the mammalian BiP/GRP78 gene. Cell 57, 1211-1221.
46. Rothblatt, J.A., and Meyer, D.I. (1986). Secretion in yeast: reconstitution of the translocation and glycosylation of a-factor and invertase in a homologous cell-free system. Cell 44, 619-628.
47. Rusinol, A., Cui, Z., Chen, M., and Vance, J. (1994). A unique mitochondria-associated membrane fraction from rat liver has a high capacity for lipid synthesis and contains pre-Golgi secretory proteins including nascent lipoproteins. J. Biol. Chem. 269, 27494-27502.
48. Ryan, K.R., and Jensen, R.E. (1995). Protein translocation across mitochondrial membranes: what a long, strange trip it is. Cell 83, 517-519.
49. Shamu, C.E., Cox, J.S., and Walter, P. (1994). The unfolded-protein-response pathway in yeast. Trends Cell Biol. 4, 56-60.
50. Shiu, R.P., Pouyssegur, J., and Pastan, I. (1971). Glucose depletion accounts for the induction of two transformation-sensitive membrane proteins in Rous sarcoma virus-transformed chick embryo fibroblasts. Proc. Natl. Acad. Sci. USA 74, 3840-3844.
51. Shyjan, A., and Butow, R. (1993). Intracellular dialogue. Curr. Biol. 3, 398-400.
52. Simbeni, R., Pon, L., Zinser, E., Paltauf, F., and Daum, G. (1991). Mitochondrial membrane contact sites of yeast: characterization of lipid components and possible involvement in intramitochondrial translocation of phospholipids. J. Biol. Chem. 266, 10047-10049.
53. Simon, M., Adam, G., Rapatz, W., Spevak, W., and Ruis, H. (1991). The Saccharomyces cerevisiae ADR1 gene is a positive regulator of transcription of genes encoding peroxisomal proteins. Mol. Cell. Biol. 11, 699-704.
54. Simon, M., Binder, M., Adam, G., Hartig, A., and Ruis, H. (1992). Control of peroxisome proliferation in Saccharomyces cerevisiae by ADR1, SNF1 (CAT1, CCR1) and SNF4 (CAT3). Yeast 8, 303-309.
55. Söliner, T., Pfaller, R., Griffiths, G., Pfanner, N., and Neupert, W. (1990). A mitochondrial import receptor for the ADP/ATP carrier. Cell 62, 107-115.
56. Subramani, S. (1993). Protein import into peroxisomes and the biogenesis of the organelle. Annu. Rev. Cell Biol. 9, 445-478.
57. Suissa, M., Suda, K., and Schatz, G. (1984). Isolation of the nuclear yeast genes for citrate synthase and fifteen other mitochondrial proteins by a new screening method. EMBO J. 3, 1773-1781.
58. Trotter, P., and Voelker, D. (1994). Lipid transport processes in eukaryotic cells. Biochim. Biophys. Acta 1213, 241-262.
59. Vance, J.E. (1990). Phospholipid synthesis in a membrane fraction associated with mitochondria. J. Biol. Chem. 265, 7248-7256.
60. Vance, J.E., and Vance, D.E. (1988). Does rat liver Golgi have the capacity to synthesize phospholipids for lipoprotein secretion? J. Biol. Chem. 263, 5898-5909.
61. Van den Bosch, H., Schutgens, R., Wanders, R., and Tager, J. (1992). Biochemistry of peroxisomes. Annu. Rev. Biochem. 61, 157-197.
62. van Meer, G. (1993). Transport and sorting of membrane lipids. Curr. Opin. Cell Biol. 5, 661-673.
63. Veenhuis, M., Mateblowski, M., Kunau, W., and Harder, W. (1987). Proliferation of microbodies in Saccharomyces cerevisiae. Yeast 3, 77-84.
64. Voelker, D.R. (1985). Disruption of phosphatidylserine translocation to the mitochondria in baby hamster kidney cells. J. Biol. Chem. 260, 14671-14676.
65. Voelker, D.R. (1990). Characterization of phosphatidylserine synthesis and translocation in permeabilized animal cells. J. Biol. Chem. 265, 14340-14346.
66. Voelker, D.R. (1993). The ATP-dependendent translocation of phosphatidylserine to the mitochondria is a process that is restricted to the autologous organelle. J. Biol. Chem. 268, 7069-7074.
67. Walter, P., and Johnson, A.E. (1994). Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane. Annu. Rev. Cell Biol. 10, 87-119.
68. Wang, T., Luo, Y., and Small, G. (1994). The POX1 gene encoding peroxisomal acyl-CoA oxidase in Saccharomyces cerevisiae is under the control of multiple regulatory elements. J. Biol. Chem. 269, 24480-24485.
69. Waters, G., and Blobel, G. (1986). Secretory protein translocation in a yeast cell free system can occur post-translationally and requires ATP hydrolysis. J. Cell Biol. 102, 1543-1550.
70. Wirtz, K. (1990). Phospholipid transfer proteins. Annu. Rev. Biochem. 60, 73-99.
71. Wolin, S., and Walter, P. (1989). Signal recognition particle mediates a transient elongation arrest of preprolactin in reticulocyte lysate. J. Cell Biol. 109, 2617-2622.
72. Wright, R., Keller, G., Gould, S., Subramani, S., and Rine, J. (1990). Cell-type control of membrane biogenesis induced by HMG-CoA reductase. New Biol. 2, 915-921.
73. Zinser, E., Sperka-Gottleib, C.D.M., Fasch, E.-V., Kohlwein, S.D., Paltauf, F., and Daum, G. (1991). Phospholipid synthesis and lipid composition of subcellular membranes in the unicellular eukaryote Saccharomyces cerevisiae. J. Bacteriol. 173, 2026-2034.