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Volumn 42, Issue 4, 2006, Pages 191-199

Genetic profiling of bacterial communities from the rhizospheres of ozone damaged Malva sylvestris (Malvaceae)

Author keywords

16S rRNA genes; Bacterial community structure; Diversity; Malva sylvestris; Ozone; PCR; Rhizosphere; SSCP

Indexed keywords

ACTINOBACTERIA; ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); MAGNOLIOPHYTA; MALVA; MALVA SYLVESTRIS; MALVACEAE; PSEUDOMONAS;

EID: 33751534218     PISSN: 11645563     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejsobi.2006.02.001     Document Type: Article
Times cited : (6)

References (41)
  • 1
    • 0034713702 scopus 로고    scopus 로고
    • Ozone stress and changes below-ground: linking root and soil processes, Phyton-Ann
    • Andersen C.P. Ozone stress and changes below-ground: linking root and soil processes, Phyton-Ann. Rei Bot. A 40 (2000) 7-12
    • (2000) Rei Bot. A , vol.40 , pp. 7-12
    • Andersen, C.P.1
  • 2
    • 0030722852 scopus 로고    scopus 로고
    • Carry-over effects of ozone on root growth and carbohydrate concentrations of ponderosa pine seedlings
    • Andersen C.P., Wilson R., Plocher M., and Hogsett W.E. Carry-over effects of ozone on root growth and carbohydrate concentrations of ponderosa pine seedlings. Tree Physiol. 17 (1997) 805-811
    • (1997) Tree Physiol. , vol.17 , pp. 805-811
    • Andersen, C.P.1    Wilson, R.2    Plocher, M.3    Hogsett, W.E.4
  • 3
    • 0025835296 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • Bassam B.J., Caetanoanolles G., and Gresshoff P.M. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal. Biochem. 196 (1991) 80-83
    • (1991) Anal. Biochem. , vol.196 , pp. 80-83
    • Bassam, B.J.1    Caetanoanolles, G.2    Gresshoff, P.M.3
  • 4
    • 21244448034 scopus 로고    scopus 로고
    • Field studies on the environmental fate of the Cry1Ab Bt-toxin produced by transgenic maize (MON810) and its effect on bacterial communities in the maize rhizosphere
    • Baumgarte S., and Tebbe C.C. Field studies on the environmental fate of the Cry1Ab Bt-toxin produced by transgenic maize (MON810) and its effect on bacterial communities in the maize rhizosphere. Mol. Ecol. 14 (2005) 2539-2551
    • (2005) Mol. Ecol. , vol.14 , pp. 2539-2551
    • Baumgarte, S.1    Tebbe, C.C.2
  • 5
    • 33646063840 scopus 로고    scopus 로고
    • Ozone stress impacts on plant life
    • Ambasht R.S., and Ambasht N.K. (Eds), Kluwer Academic/Plenum Publishers, New York
    • Bender J., and Weigel H.J. Ozone stress impacts on plant life. In: Ambasht R.S., and Ambasht N.K. (Eds). Modern Trends in Applied Terrestrial Ecology (2002), Kluwer Academic/Plenum Publishers, New York 165-182
    • (2002) Modern Trends in Applied Terrestrial Ecology , pp. 165-182
    • Bender, J.1    Weigel, H.J.2
  • 6
    • 0033510163 scopus 로고    scopus 로고
    • Ozone threshold doses and exposure-response relationships for the development of ozone injury symptoms in wild plant species
    • Bergmann E., Bender J., and Weigel H.J. Ozone threshold doses and exposure-response relationships for the development of ozone injury symptoms in wild plant species. New Phytol. 144 (1999) 423-435
    • (1999) New Phytol. , vol.144 , pp. 423-435
    • Bergmann, E.1    Bender, J.2    Weigel, H.J.3
  • 7
    • 1542327159 scopus 로고    scopus 로고
    • The rhizosphere and its management to improve plant growth
    • Bowen G.D., and Rovira A.D. The rhizosphere and its management to improve plant growth. Adv. Agron. 66 (1999) 1-102
    • (1999) Adv. Agron. , vol.66 , pp. 1-102
    • Bowen, G.D.1    Rovira, A.D.2
  • 8
    • 0023525051 scopus 로고
    • The impact of ozone on assimilate partitioning in plants-a review
    • Cooley D.R., and Manning W.J. The impact of ozone on assimilate partitioning in plants-a review. Environ. Pollut. 47 (1987) 95-113
    • (1987) Environ. Pollut. , vol.47 , pp. 95-113
    • Cooley, D.R.1    Manning, W.J.2
  • 9
    • 0031780287 scopus 로고    scopus 로고
    • Effects of ozone on wild plants
    • Davison A.W., and Barnes J.D. Effects of ozone on wild plants. New Phytol. 139 (1998) 135-151
    • (1998) New Phytol. , vol.139 , pp. 135-151
    • Davison, A.W.1    Barnes, J.D.2
  • 10
    • 29144448799 scopus 로고    scopus 로고
    • Effect of elevated tropospheric ozone on the structure of bacterial communities inhabiting the rhizosphere of herbaceous plants native to Germany
    • Dohrmann A.B., and Tebbe C.C. Effect of elevated tropospheric ozone on the structure of bacterial communities inhabiting the rhizosphere of herbaceous plants native to Germany. Appl. Environ. Microbiol. 71 (2005) 7750-7758
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7750-7758
    • Dohrmann, A.B.1    Tebbe, C.C.2
  • 12
    • 0035163562 scopus 로고    scopus 로고
    • Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA
    • Duineveld B.M., Kowalchuk G.A., Keijzer A., van Elsas J.D., and Van Veen J.A. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. Appl. Environ. Microbiol. 67 (2001) 172-178
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 172-178
    • Duineveld, B.M.1    Kowalchuk, G.A.2    Keijzer, A.3    van Elsas, J.D.4    Van Veen, J.A.5
  • 14
    • 0030664464 scopus 로고    scopus 로고
    • Critical levels for ozone effects on vegetation in Europe
    • Fuhrer J., Skärby L., and Ashmore M.R. Critical levels for ozone effects on vegetation in Europe. Environ. Pollut. 97 (1997) 91-106
    • (1997) Environ. Pollut. , vol.97 , pp. 91-106
    • Fuhrer, J.1    Skärby, L.2    Ashmore, M.R.3
  • 15
    • 0034948012 scopus 로고    scopus 로고
    • Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis
    • Gomes N.C.M., Heuer H., Schönfeld J., Costa R., Mendonca-Hagler L., and Smalla K. Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil 232 (2001) 167-180
    • (2001) Plant Soil , vol.232 , pp. 167-180
    • Gomes, N.C.M.1    Heuer, H.2    Schönfeld, J.3    Costa, R.4    Mendonca-Hagler, L.5    Smalla, K.6
  • 16
    • 1942488337 scopus 로고    scopus 로고
    • Use of ozone in the food industry, Food Sci. Technol. -
    • Guzel-Seydim Z.B., Greene A.K., and Seydim A.C. Use of ozone in the food industry, Food Sci. Technol. -. Leb. 37 (2004) 453-460
    • (2004) Leb. , vol.37 , pp. 453-460
    • Guzel-Seydim, Z.B.1    Greene, A.K.2    Seydim, A.C.3
  • 17
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer H., Krsek M., Baker P., Smalla K., and Wellington E.M.H. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 63 (1997) 3233-3241
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.M.H.5
  • 18
    • 0019433030 scopus 로고
    • The rapid inhibition of root respiration after exposure of bean (Phaseolus vulgaris L.) plants to ozone
    • Hofstra G., Ali A., Wukasch R.T., and Fletcher R.A. The rapid inhibition of root respiration after exposure of bean (Phaseolus vulgaris L.) plants to ozone. Atmos. Environ. 15 (1981) 483-487
    • (1981) Atmos. Environ. , vol.15 , pp. 483-487
    • Hofstra, G.1    Ali, A.2    Wukasch, R.T.3    Fletcher, R.A.4
  • 19
    • 1842457702 scopus 로고    scopus 로고
    • Significance test for comparing complex microbial community fingerprints using pairwise similarity measures
    • Kropf S., Heuer H., Gruning M., and Smalla K. Significance test for comparing complex microbial community fingerprints using pairwise similarity measures. J. Microbiol. Methods 57 (2004) 187-195
    • (2004) J. Microbiol. Methods , vol.57 , pp. 187-195
    • Kropf, S.1    Heuer, H.2    Gruning, M.3    Smalla, K.4
  • 20
    • 0004189303 scopus 로고
    • John Wiley and Sons, Chichester
    • Lynch J.M. The Rhizosphere (1990), John Wiley and Sons, Chichester
    • (1990) The Rhizosphere
    • Lynch, J.M.1
  • 21
    • 0036882485 scopus 로고    scopus 로고
    • Egyptian plant species as new ozone indicators
    • Madkour S.A., and Laurence J.A. Egyptian plant species as new ozone indicators. Environ. Pollut. 120 (2002) 339-353
    • (2002) Environ. Pollut. , vol.120 , pp. 339-353
    • Madkour, S.A.1    Laurence, J.A.2
  • 22
    • 0028608253 scopus 로고
    • Evidence of a long-term increase in tropospheric ozone from Pic du Midi data series-consequences-positive radiative forcing
    • Marenco A., Gouget H., Nedelec P., Pages J.P., and Karcher F. Evidence of a long-term increase in tropospheric ozone from Pic du Midi data series-consequences-positive radiative forcing. J. Geophys. Res. -, Atmos. 99 (1994) 16617-16632
    • (1994) J. Geophys. Res. -, Atmos. , vol.99 , pp. 16617-16632
    • Marenco, A.1    Gouget, H.2    Nedelec, P.3    Pages, J.P.4    Karcher, F.5
  • 23
    • 84982619733 scopus 로고
    • Influence of ozone on carbon partitioning in tomato-potential role of carbon flow in regulation of the mycorrhizal symbiosis under conditions of stress
    • McCool P.M., and Menge J.A. Influence of ozone on carbon partitioning in tomato-potential role of carbon flow in regulation of the mycorrhizal symbiosis under conditions of stress. New Phytol. 94 (1983) 241-247
    • (1983) New Phytol. , vol.94 , pp. 241-247
    • McCool, P.M.1    Menge, J.A.2
  • 24
    • 0033977274 scopus 로고    scopus 로고
    • The effect of ozone on below-ground carbon allocation in wheat
    • McCrady J.K., and Andersen C.P. The effect of ozone on below-ground carbon allocation in wheat. Environ. Pollut. 107 (2000) 465-472
    • (2000) Environ. Pollut. , vol.107 , pp. 465-472
    • McCrady, J.K.1    Andersen, C.P.2
  • 25
    • 0033818198 scopus 로고    scopus 로고
    • Variation of microbial rhizosphere communities in response to crop species, soil origin, and inoculation with Sinorhizobium meliloti L33
    • Miethling R., Wieland G., Backhaus H., and Tebbe C.C. Variation of microbial rhizosphere communities in response to crop species, soil origin, and inoculation with Sinorhizobium meliloti L33. Microb. Ecol. 40 (2000) 43-56
    • (2000) Microb. Ecol. , vol.40 , pp. 43-56
    • Miethling, R.1    Wieland, G.2    Backhaus, H.3    Tebbe, C.C.4
  • 26
    • 14644399291 scopus 로고    scopus 로고
    • Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi
    • Milling A., Smalla K., Maidl F.X., Schloter M., and Munch J.C. Effects of transgenic potatoes with an altered starch composition on the diversity of soil and rhizosphere bacteria and fungi. Plant Soil 266 (2004) 23-39
    • (2004) Plant Soil , vol.266 , pp. 23-39
    • Milling, A.1    Smalla, K.2    Maidl, F.X.3    Schloter, M.4    Munch, J.C.5
  • 27
    • 0141635248 scopus 로고    scopus 로고
    • Rhizodeposition of organic C by plants: mechanisms and controls
    • Nguyen C. Rhizodeposition of organic C by plants: mechanisms and controls. Agronomie 23 (2003) 375-396
    • (2003) Agronomie , vol.23 , pp. 375-396
    • Nguyen, C.1
  • 28
    • 0036942470 scopus 로고    scopus 로고
    • Microbial community composition and function beneath temperate trees exposed to elevated atmospheric carbon dioxide and ozone
    • Phillips R.L., Zak D.R., Holmes W.E., and White D.C. Microbial community composition and function beneath temperate trees exposed to elevated atmospheric carbon dioxide and ozone. Oecologia 131 (2002) 236-244
    • (2002) Oecologia , vol.131 , pp. 236-244
    • Phillips, R.L.1    Zak, D.R.2    Holmes, W.E.3    White, D.C.4
  • 29
    • 0001815831 scopus 로고    scopus 로고
    • Computer-assisted pattern analysis of molecular fingerprints and database construction
    • Akkermans A.D.L., van Elsas J.D., and de Bruijn F.J. (Eds), Dordrecht, NL
    • Rademaker J.L.W., Louws F.J., Rossbach U., Vinuesa P., and de Bruijn F.J. Computer-assisted pattern analysis of molecular fingerprints and database construction. In: Akkermans A.D.L., van Elsas J.D., and de Bruijn F.J. (Eds). Molecular Microbial Ecology Manual (1999), Dordrecht, NL 1-33
    • (1999) Molecular Microbial Ecology Manual , pp. 1-33
    • Rademaker, J.L.W.1    Louws, F.J.2    Rossbach, U.3    Vinuesa, P.4    de Bruijn, F.J.5
  • 30
    • 0006899947 scopus 로고
    • Plant root exudates
    • Rovira A.D. Plant root exudates. Bot. Rev. 35 (1969) 35-57
    • (1969) Bot. Rev. , vol.35 , pp. 35-57
    • Rovira, A.D.1
  • 32
    • 0037241118 scopus 로고    scopus 로고
    • Bacterial diversity in maize rhizospheres: conclusions on the use of genetic profiles based on PCR-amplified partial small subunit rRNA genes in ecological studies
    • Schmalenberger A., and Tebbe C.C. Bacterial diversity in maize rhizospheres: conclusions on the use of genetic profiles based on PCR-amplified partial small subunit rRNA genes in ecological studies. Mol. Ecol. 12 (2003) 251-261
    • (2003) Mol. Ecol. , vol.12 , pp. 251-261
    • Schmalenberger, A.1    Tebbe, C.C.2
  • 33
    • 0037246188 scopus 로고    scopus 로고
    • Genetic profiling of noncultivated bacteria from the rhizospheres of sugar beet (Beta vulgaris) reveal field and annual variability but no effect of a transgenic herbicide resistance
    • Schmalenberger A., and Tebbe C.C. Genetic profiling of noncultivated bacteria from the rhizospheres of sugar beet (Beta vulgaris) reveal field and annual variability but no effect of a transgenic herbicide resistance. Can. J. Microbiol. 49 (2003) 1-8
    • (2003) Can. J. Microbiol. , vol.49 , pp. 1-8
    • Schmalenberger, A.1    Tebbe, C.C.2
  • 34
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger F., and Tebbe C.C. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl. Environ. Microbiol. 64 (1998) 4870-4876
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 35
    • 0033861401 scopus 로고    scopus 로고
    • Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album)-linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria
    • Schwieger F., and Tebbe C.C. Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album)-linking of 16S rRNA gene-based single-strand conformation polymorphism community profiles to the diversity of cultivated bacteria. Appl. Environ. Microbiol. 66 (2000) 3556-3565
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3556-3565
    • Schwieger, F.1    Tebbe, C.C.2
  • 36
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed
    • Smalla K., Wieland G., Buchner A., Zock A., Parzy J., Kaiser S., Roskot N., Heuer H., and Berg G. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67 (2001) 4742-4751
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 37
    • 0016314623 scopus 로고
    • Removal of ozone from atmosphere by soil and vegetation
    • Turner N.C., Waggoner P.E., and Rich S. Removal of ozone from atmosphere by soil and vegetation. Nature 250 (1974) 486-489
    • (1974) Nature , vol.250 , pp. 486-489
    • Turner, N.C.1    Waggoner, P.E.2    Rich, S.3
  • 38
    • 0001558527 scopus 로고
    • Ecotoxicological aspects of air-pollutants.2. Design of an open-top field chamber system to investigate the effects of air-pollutants on plants, Landbauforsch
    • Weigel H.J., and Jäger H.J. Ecotoxicological aspects of air-pollutants.2. Design of an open-top field chamber system to investigate the effects of air-pollutants on plants, Landbauforsch. Volk. 38 (1988) 182-195
    • (1988) Volk. , vol.38 , pp. 182-195
    • Weigel, H.J.1    Jäger, H.J.2
  • 40
    • 0034896344 scopus 로고    scopus 로고
    • Differences in above- and below-ground responses to ozone between two populations of a perennial grass
    • Yoshida L.C., Gamon J.A., and Andersen C.P. Differences in above- and below-ground responses to ozone between two populations of a perennial grass. Plant Soil 233 (2001) 203-211
    • (2001) Plant Soil , vol.233 , pp. 203-211
    • Yoshida, L.C.1    Gamon, J.A.2    Andersen, C.P.3


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