Intermolecular vibrational coherence in bacteriochlorophyll a with clustered polar solvent molecules

Journal of Physical Chemistry B

Volumn 110, Issue 41, 2006, Pages 20586-20595

  Shelly, Katherine R ^a,b   Golovich, Elizabeth C ^a,c   Beck, Warren F ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b Beckman Coulter Inc   (United States)

^c PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION; ACETONE; BACTERIA; GROUND STATE; NATURAL FREQUENCIES; PROTEINS; SOLVENTS;

BACTERIOCHLOROPHYLL; DIPOLE MOMENT; LONDON DISPERSION INTERACTION; POLAR SOLVENTS;

CHLOROPHYLL;

EID: 33751261453     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp062909v     Document Type: Article

References (110)

1. Bixon, M.; Jortner, J. Chem. Phys. Lett. 1989, 159, 17-20.
2. Johnson, S. G.; Tang, D.; Jankowiak, R.; Hayes, J. M.; Small, G. H. J. Phys. Chem. 1989, 93, 5953-5957.
3. Johnson, S. G.; Tang, D.; Jankowiak, R.; Hayes, J. M.; Small, G. J.; Tiede, D. M. J. Phys. Chem. 1990, 94, 5849-5855.
4. Vos, M. H.; Lambry, J. C.; Robles, S. J.; Youvan, D. C.; Breton, J.; Martin, J. L. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 8885-8889.
5. Vos, M. H.; Lambry, J. C.; Robles, S. J.; Youvan, D. C.; Breton, J.; Martin, J. L. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 613-617.
6. Vos, M. H.; Rappaport, F.; Lambry, J.-C.; Breton, J.; Martin, J.-L. Nature 1993, 363, 320-325.
7. Vos, M. H.; Jones, M. R.; Hunter, C. N.; Breton, J.; Lambry, J.-C., Martin, J.-L. Biochemistry 1994, 33, 6750-6757.
8. Vos, M. H.; Jones, M. R.; Hunter, C. N.; Breton, J.; Martin, J.-L. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 12701-12705.
9. Stanley, R. J.; Boxer, S. G. J. Phys. Chem. 1995, 99, 859-863.
10. Vos, M. H.; Jones, M. R.; Martin, J. L. Chem. Phys. 1998, 233, 179-190.
11. Yakovlev, A.; Shkuropatov, A.; Shuvalov, V. FEBS Lett. 2000, 466, 209-212.
12. Yakovlev, A.; Shkuropatov, A.; Shuvalov, V. Biochemistry 2002, 41, 2667-2674.
13. Yakovlev, A.; Shkuropatov, A.; Shuvalov, V. Biochemistry 2002, 41, 14019-14027.
14. Shuvalov, V.; Yakovlev, A. FEBS Lett. 2003, 540, 26-34.
15. Spörlein, S.; Zinth, W.; Wachtveitl, J. J. Phys. Chem. B 1998, 102, 7492-7496.
16. Huppmann, P.; Spörlein, S.; Bibikova, M.; Oesterhelt, D.; Wachtveitl, J.; Zinth, W. J. Phys. Chem. A 2003, 107, 8302-8309.
17. Palaniappan, V.; Aldema, M. A.; Frank, H. A.; Bocian, D. F. Biochemistry 1992, 31, 11050-11058.
18. Czarnecki, K.; Diers, J. R.; Chynwat, V.; Erickson, J. P.; Frank, H. A.; Bocian, D. F. J. Am. Chem. Soc. 1997, 119, 415-426.
19. Thompson, M. A.; Zerner, M. C.; Fajer, J. J. Phys. Chem. 1990, 94, 3820-3828.
20. Thompson, M. A.; Zerner, M. C.; Fajer, J. J. Phys. Chem. 1991, 95, 5693-5700.
21. Vos, M. H.; Martin, J.-L. Biochim. Biophys. Acta 1999, 1411, 1-20.
22. Brooks, C. L., III; Karplus, M.; Pettitt, B. M. Proteins: a Theoretical Perspective of Dynamics, Structure, and Thermodynamics; John Wiley and Sons: New York, 1988.
23. Peticolas, W. L. Methods Enzymol. 1978, 61, 425-458.
24. Vos, M. H.; Jones, M. R.; Breton, J.; Lambry, J.-C.; Martin, J.-L. Biochemistry 1996, 35, 2687-2692.
25. Savikhin, S.; Struve, W. S. Biophys. J. 1994, 67, 2002-2007.
26. Chachisvilis, M.; Fidder, H.; Pullerits, T.; Sundström, V. J. Raman Spectrosc. 1998, 26, 513-522.
27. Rischel, C.; Spiedel, D.; Ridge, J. P.; Jones, M. R.; Breton, J.; Lambry, J.-C.; Martin, J.-L.; Vos, M. H. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 12306-12311.
28. Lotshaw, W. T.; McMorrow, D.; Thantu, N.; Melinger, J. S.; Kitchenbaum, R. J. Raman Spectrosc. 1995, 26, 571-583.
29. McMorrow, D.; Lotshaw, W. T. Chem. Phys. Lett. 1993, 207, 369-376.
30. McMorrow, D.; Lotshaw, W. T. J. Phys. Chem. 1991, 95, 10395-10406.
31. Shelly, K. R.; Carson, E. A.; Beck, W. F. J. Am. Chem. Soc. 2003, 125, 11810-11811.
32. Lakowicz, J. R. Principles of Fluorescence Spectroscopy, 2nd ed.; Kluwer Academic/Plenum Publishers: New York, 1999.
33. Lampa-Pastirk, S.; Lafuente, R. C.; Beck, W. F. J. Phys. Chem. B 2004, 108, 12602-12607.
34. Fragnito, H. L.; Bigot, J.-Y.; Becker, P. C.; Shank, C. V. Chem. Phys. Lett. 1989, 160, 101-104.
35. Pollard, W. T.; Brito Cruz, C. H.; Shank, C. V.; Mathies, R. A. J. Chem. Phys. 1989, 90, 199-208.
36. Pollard, W. T.; Fragnito, H. L.; Bigot, J.-Y.; Shank, C. V.; Mathies, R. A. Chem. Phys. Lett. 1990, 168, 239-245.
37. Schoenlein, R. W.; Peteanu, L. A.; Mathies, R. A.; Shank, C. V. Science 1991, 254, 412-415.
38. Dexheimer, S. L.; Wang, Q.; Peteanu, L. A.; Pollard, W. T.; Mathies, R. A.; Shank, C. V. Chem. Phys. Lett. 1992, 188, 61-66.
39. Pollard, W. T.; Dexheimer, S. L.; Wang, Q.; Peteanu, L. A.; Shank, C. V.; Mathies, R. A. J. Phys. Chem. 1992, 96, 6147-6158.
40. Peteanu, L. A.; Schoenlein, R. W.; Wang, Q.; Mathies, R. A.; Shank, C. V. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 11762-11766.
41. Schoenlein, R. W.; Peteanu, L. A.; Wang, Q.; Mathies, R. A.; Shank, C. V. J. Phys. Chem. 1993, 97, 12087-12092.
42. Wang, Q.; Schoenlein, R. W.; Peteanu, L. A.; Mathies, R. A.; Shank, C. V. Science 1994, 266, 422-424.
43. Zhu, L.; Li, P.; Huang, M.; Sage, J. T.; Champion, P. M. Phys. Rev. Lett. 1994, 72, 301-304.
44. Wang, W.; Demidov, A.; Ye, X.; Christian, J. F.; Sjodin, T.; Champion, P. M. J. Raman Spectrosc. 2000, 31, 99-105.
45. Rosca, F.; Ionascu, D.; Kumar, A. T. N.; Demidov, A. A.; Champion, P. M. Chem. Phys. Lett. 2001, 337, 107-116.
46. Diffey, W. M.; Beck, W. F. Rev. Sci. Instrum. 1997, 68, 3296-3300.
47. Carson, E. A.; Diffey, W. M.; Shelly, K. R.; Lampa-Pastirk, S.; Dillman, K. L.; Schleicher, J. M.; Beck, W. F. J. Phys. Chem. A 2004, 108, 1489-1500.
48. Evans, T.; Katz, J. Biochim. Biophys. Acta 1975, 396, 414-426.
49. Katz, J.; Strain, H.; Leussing, D.; Dougherty, R. J. Am. Chem. Soc. 1968, 90, 784-791.
50. Shipman, L.; Cotton, T. M.; Norris, J. R.; Katz, J. J. Am. Chem. Soc. 1976, 98, 8222-8230.
51. Cantor, C. R.; Schimmel, P. R. Biophysical Chemistry. Part II: Techniques for the Study of Biological Structure and Function; W. H. Freeman and Company: San Francisco, CA, 1980.
52. McHale, J. L. Molecular Spectroscopy; Prentice Hall: Upper Saddle River, NJ, 1999.
53. Pollard, W. T.; Mathies, R. A. Annu. Rev. Phys. Chem. 1992, 43, 497-523.
54. Balk, M. W.; Fleming, G. R. J. Chem. Phys 1985, 83, 4300-4307.
55. Engh, R. A.; Petrich, J. W.; Fleming, G. R. J. Phys. Chem. 1985, 89, 618-621.
56. Cong, P.; Deuhl, H. P.; Simon, J. D. Chem. Phys. Lett. 1993, 211, 367-373.
57. Joo, T.; Jia, Y.; Yu, J.-Y.; Lang, M. J.; Fleming, G. R. J. Chem. Phys. 1996, 104, 6089-6108.
58. Xu, Q.-H.; Ma, Y.-Z.; Stiopkin, I. V.; Fleming, G. R. J. Chem. Phys. 2002, 116, 9333-9340.
59. Rector, K. D.; Zimdars, D.; Fayer, M. D. J. Chem. Phys. 1998, 109, 5455-5465.
60. Siano, D. B.; Metzler, D. E. J. Chem. Phys. 1969, 51, 1856-1861.
61. pro Fit 6.0; QuantumSoft: Uetikon am See, Switzerland.
62. Weast, R. C. CRC Handbook of Chemistry and Physics, 85th ed.; CRC Press: Boca Raton, FL, 2004.
63. McMorrow, D.; Lotshaw, W. T. Chem. Phys, Lett. 1990, 174, 85-94.
64. McMorrow, D.; Lotshaw, W. T. Chem. Phys. Lett. 1991, 178, 69-74.
65. McMorrow, D. Opt. Commun. 1991, 86, 236-244.
66. Lotshaw, W. T.; Staver, P. R.; McMorrow, D.; Thantu, N.; Melinger, J. S. In Ultrafast Phenomena IX; Barbara, P. F., Knox, W. H., Mourou, G. A., Zewail, A. H., Eds.; Springer-Verlag: Berlin, 1994; pp 91-92.
67. Castner, E. W.; Maroncelli, M. J. Mol. Liq. 1998, 77, 1-36.
68. McMorrow, D.; Thantu, N.; Kleiman, V.; Melinger, J. S. J. Phys. Chem. A 2001, 105, 7960-7972.
69. Albrecht, A. C. J. Chem. Phys. 1960, 33, 156-169.
70. Tang, J.; Albrecht, A. C. In Raman Spectroscopy: Theory and Practice; Szymanski, H. A., Ed.; Plenum: New York, 1970; Vol. 2, pp 33-68.
71. Albrecht, A. C.; Hutley, M. C. J. Chem. Phys. 1971, 55, 4438-4443.
72. Myers, A. B.; Mathies, R. A. In Biological Applications of Raman Spectroscopy; Spiro, T. G., Ed.; Wiley-Interscience: New York, 1987; Vol. 2, Resonance Raman Speçtra of Polyenes and Aromatics, pp 1-58.
73. Lin, S. W.; Groesbeek, M.; van der Hoef, I.; Verdegem, P.; Lugtenburg, J.; Mathies, R. A. J. Phys. Chem. B 1998, 102, 2787-2806.
74. Tauber, M. J.; Stuart, C. M.; Mathies, R. A. J. Am. Chem. Soc. 2004, 126, 3414-3415.
75. Tauber, M. J.; Mathies, R. A. Chem. Phys. Lett. 2002, 354, 518-526.
76. Alfano, J. C.; Walhout, P. K.; Kimura, Y.; Barbara, P. F. J. Chem. Phys. 1993, 98, 5996-5998.
77. Kimura, Y.; Alfano, J. C.; Walhout, P. K.; Barbara, P. F. J. Phys. Chem. 1994, 98, 3450-3458.
78. Reid, P. J.; Silva, C.; Walhout, P. K.; Barbara, P. F. Chem. Phys. Lett. 1994, 228, 658-664.
79. Walhout, P. K.; Alfano, J. C.; Kimura, Y.; Silva, C.; Reid, P. J.; Barbara, P. F. Chem. Phys. Lett. 1995, 232, 135-140.
80. Silva, C.; Walhout, P. K.; Reid, P. J.; Barbara, P. F. J. Phys. Chem. A 1998, 102, 5701-5707.
81. Waterland, M.; Myers Kelley, A. J. Chem. Phys. 2000, 113, 6760-6773.
82. Kambhampati, P.; Son, D. H.; Kee, T. W.; Barbara, P. F. J. Phys. Chem. A 2000, 104, 10637-10644.
83. Jortner, J. Z. Phys. D: At., Mol. Clusters 1992, 24, 247-275.
84. Spence, T. G.; Trotter, B. T.; Burns, T. D.; Posey, L. A. J. Phys. Chem. A 1998, 102, 6101-6106.
85. Mikkelsen, K. V.; Ratner, M. A. J. Chem. Phys. 1989, 90, 4237-4247.
86. Mikkelsen, K. V.; Ratner, M. A. J. Phys. Chem. 1989, 93, 1759-1770.
87. Billing, G. D.; Mikkelsen, K. V. Advanced Molecular Dynamics and Chemical Kinetics; John Wiley & Sons: New York, 1997.
88. Gamba, Z.; Klein, M. L. J. Chem. Phys. 1990, 92, 6973-6974.
89. Wynne, K.; Galli, C.; Hochstrasser, R. M. Chem. Phys. Lett. 1992, 193, 17-22.
90. Cox, E.; Cruickshank, D.; Smith, J. Proc. R. Soc. A 1958, 247, 1-21.
91. Bacon, G.; Curry, N.; Wilson, S. Proc. R. Soc. A 1964, 279, 98-110.
92. Park, Y. C.; Lee, J. S. J. Phys. Chem. B 2006, 110, 5091-5095.
93. Tsuzuki, S.; Uchimaru, T.; Mikami, M. J. Phys. Chem. A 2006, 110, 2027-2033.
94. Lee, N. K.; Park, S.; Kim, S. K. J. Chem. Phys. 2002, 116, 7902-7909.
95. Lee, N. K.; Park, S.; Kim, S. K. J. Chem. Phys. 2002, 116, 7910-7917.
96. Kincaid, J. R.; Proniewicz, L. M.; Bajdor, K.; Bruha, A.; Nakamoto, K. J. Am. Chem. Soc. 1985, 107, 6775-6781.
97. Proniewicz, L. M.; Nakamoto, K.; Kincaid, J. R. J. Am. Chem. Soc. 1988, 110, 4541-4545.
98. Ladanyi, B. M.; Stratt, R. M. J. Phys. Chem. 1995, 99, 2502-2511.
99. Straff, R. M.; Maroncelli, M. J. Phys. Chem. 1996, 100, 12981-12996.
100. Garg, S. K.; Smyth, C. P. J. Phys. Chem. 1965, 69, 1294-1301.
101. Jorgensen, W. L. J. Am. Chem. Soc. 1980, 102, 543-549.
102. Bertolini, D.; Cassettari, M.; Salvetti, G. J. Chem. Phys. 1983, 78, 365-372.
103. Sumi, H.; Marcus, R. A. J. Chem. Phys. 1986, 84, 4272-4276.
104. London, F. Trans. Faraday Soc. 1937, 33, 8-26.
105. Margenau, H. Rev. Mod. Phys. 1939, 11, 1-35.
106. Kauzmann, W. Quantum Chemistry: An Introduction; Academic Press: New York, 1957.
107. Berry, R. S.; Rice, S. A.; Ross, J. Physical Chemistry, 2nd ed.; Oxford University Press: New York, 2000.
108. Berg, M.; Vanden Bout, D. A. Acc. Chem. Res. 1997, 30, 65-71.
109. Berg, M. J. Phys. Chem. A 1998, 102, 17-30.
110. Berg, M. J. Chem. Phys. 1999, 110, 8577-8588.