Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers

Theoretical and Applied Genetics

Volumn 114, Issue 1, 2006, Pages 49-58

  Mariac, Cedric ^a   Luong, Viviane ^a   Kapran, Issoufou ^b   Mamadou, Aïssata ^b   Sagnard, Fabrice ^c   Deu, Monique ^c   Chantereau, Jacques ^c   Gerard, Bruno ^d   Ndjeunga, Jupiter ^d   Bezançon, Gilles ^e   Pham, Jean Louis ^a   Vigouroux, Yves ^a  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b Institut National de Recherches Agronomiques du Niger   (Niger)

^c CIRAD   (France)

^d ICRISAT Sahelian Center   (Niger)

^e Institut de Recherche pour le Développement IRD UMR DIAPC   (Niger)

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURAL PRODUCTS; BIOMARKERS; CULTIVATION; ENZYMES; STATISTICAL METHODS;

GENETIC DIVERSITY; GERMPLASM CONSERVATION; MICROSATELLITE MARKERS;

GENETIC ENGINEERING;

MICROSATELLITE DNA;

ALLELE; ARTICLE; CROP; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; NIGER; PEARL MILLET;

ALLELES; CROPS, AGRICULTURAL; GEOGRAPHY; MICROSATELLITE REPEATS; NIGER; PENNISETUM; VARIATION (GENETICS);

AGRICULTURE; ENZYMES; GENETIC ENGINEERING; INTROGRESSION; STATISTICS;

PENNISETUM GLAUCUM;

EID: 33751253117     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0409-9     Document Type: Article

References (36)

1. Allouis S, Qi X, Lindup S, Gale MD, Devos KM (2000) Construction of a BAC library of pearl millet, Pennisetum glaucum. Theor Appl Genet 102:1200-1205
2. Amoukou AI, Marchais L (1993) Evidence of partial reproductive barrier between wild and cultivated pearl millets (Pennisetum glaucum). Euphytica 67:19-26
3. Bertin I, Zhu JH, Gale MD (2005) SSCP-SNP in pearl millet - a new marker system for comparative genetics. Theor Appl Genet 110:1467-1472
4. Bhattacharjee R, Bramel PJ, Hash CT, Kolesnikova-Allen MA, Khairwal IS (2002) Assessment of genetic diversity within and between pearl millet landraces. Theor Appl Genet 105:666-673
5. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32:314-331
6. Budak H, Pedraza F, Cregan PB, Baenzinger PS, Dweikat I (2003) Development and utilization of SSRs to estimate the degree of genetic relationships in a collection of pearl millet germplasm. Crop Sci 43:2284-2290
7. Busso CS, Devos KM, Ross G, Mortimore M, Adams WM, Ambrose MJ, Alldrick S, Gale M-D (2000) Genetic diversity within and among landraces of pearl millet (Pennisetum glaucum) under farmer management in West Africa. Genet Res Crop Evol 47:561-568
8. Endler JA (1986) Natural selection in the wild. Princeton University Press, Princeton, NJ
9. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software Structure: a simulation study. Mol Ecol 14:2611-2620
10. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587
11. Fukunaga K, Hill J, Vigouroux Y, Matsuoka Y, Sanchez GJ, Liu K, Buckler ES, Doebley J (2005) Genetic diversity and population structure of teosinte. Genetics 169:2241-2254
12. Goudet J (2001) FSTAT, a program to estimate and test gene diversity and fixation indices (version 2.9.3). Available from http://www.unil.ch/izea/ softwares/fstat.html. Updated from Goudet (1995)
13. Guenguant J-P, Banoin M (2003) Dynamique des populations, disponibilités des terres et adaptation des régimes fonciers: le cas du Niger. CICRED-FAO, Paris, 157p
14. Harlan J, De Wet J, Stemler A (1976) Origins of African plant domestication. Mouton Publishers, La Hague
15. Leblanc JM, Pernes J (1983) Enzyme polymorphism of Pennisetum americanum in the Ivory Coast. Jpn J Genet 58:121-131
16. Liu K, Muse S (2005) PowerMarker: new genetic data analysis software. Version 3.23. Free program distributed by the author over the internet from http://www.powermarker.net
17. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
18. Marchais L (1994) Wild pearl millet (Pennisetum glaucum, Poaceae) integrity in agricultural Sahelian areas. An example from Keita (Niger). Pl Syst Evol 189:233-245
19. Matsuoka Y, Vigouroux Y, Goodman M-M, Sanchez J, Buckler E, Doebley J (2002) A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci USA 99:6080-6084
20. Pressoir G, Berthaud J (2004a) Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico. Heredity 92:88-94
21. Pressoir G, Berthaud J (2004b) Population structure and strong divergent selection shape phenotypic diversification in maize landraces. Heredity 92:95-101
22. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
23. Qi X, Lindup S, Pittaway TS, Allouis S, Gale MD, Devos KM (2001) Development of simple sequence repeat markers from bacterial artificial chromosome without sub-cloning. Biotechniques 31:355-362
24. Qi X, Pittaway TS, Lindup S, Liu H, Wateran E, Padi FK, Hash CT, Zhu J, Gale MD, Devos KM (2004) An integrated genetic map and new set of simple sequence repeat markers for pearl millet, Pennisetum glaucum. Theor Appl Genet 109:1485-1493
25. Renno JF, Winkel T (1996) Phenology and reproductive effort of cultivated and wild forms of Pennisetum glaucum under experimental conditions in the Sahel: implications for the maintenance of polymorphism in the species. Can J Bot 74:959-964
26. Robert T, Lespinasse R, Pernès J, Sarr A (1991) Gametophytic competition as influencing gene flow between wild and cultivated forms of pearl millet (Pennisetum typhoides). Genome 34:195-200
27. Robert T, Luxereau A, Mariac C, Ali K, Allinne C, Bani J, Beidari Y, Bezançon G, Cayeux S, Couturon E, Dedieu V, Moussa D, Sadou M, Seydou M, Seyni O, Tidjani M, Sarr A (2002) Gestion de la diversitéen milieu paysan: influence de facteurs anthropiques et des flux de gènes sur la variabilité génétique des formes cultivées et spontanées du mil (Pennisetum glaucum (L.) R. Br.) dans deux localités du Niger. BRG, Actes du 4ème Colloque National «Le patrimoine génétique: la diversité et la ressource». La Châtre, France
28. Sarr A, Sandmeier M, Pernès J (1988) Gametophytic competition in pearl millet Pennisetum typhoides (Stapf. and Hubb.). Genome 30:924-929
29. Sokal R-R, Rohlf F-J (1995) Biometry: the principles and practice of statistics in biological research, 3rd edn. W.H. Freemand and Co., New York
30. Tostain S (1992) Enzyme diversity in pearl millet (Pennisetum glaucum L.) 3. Wild millet. Theor Appl Genet 83:733-742
31. Tostain S (1994) Isoenzymatic classification of pearl millet (Pennisetum glaucum, Poaceae) landraces from Niger (West Africa). Pl Syst Evol 193:81-93
32. Tostain S, Marchais L (1989) Enzyme diversity in pearl millet (Pennisetum glaucum). 2. Africa and India. Theor Appl Genet 77:634-640
33. Tostain S, Riandley MF, Marchais L (1987) Enzyme diversity in pearl millet (Pennisetum glaucum). 1. West Africa. Theor Appl Genet 74:188-193
34. Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WD, Smith JS, Doebley J (2002) Rate and pattern of mutation at microsatellite loci in maize. Mol Biol Evol 19:1251-1260
35. Vigouroux Y, Mitchell S, Matsuoka Y, Hamblin M, Kresovich S, Smith JS, Jaqueth J, Smith OS, Doebley J (2005) An analysis of genetic diversity across the maize genome using microsatellites. Genetics 169:1617-1630
36. Vom Brocke K, Christinck A, Weltzien ER, Presterl T, Geiger HH (2003) Farmers' seed systems and management practices determine pearl millet genetic diversity patterns in semi-arid regions of India. Crop Sci 43:1680-1689