Peptide folding dynamics: A time-resolved study from the nanosecond to the microsecond time regime

Journal of Physical Chemistry B

Volumn 110, Issue 45, 2006, Pages 22834-22841

  Venanzi, Mariano ^a   Gatto, Emanuela ^a   Bocchinfuso, Gianfranco ^a   Palleschi, Antonio ^a   Stella, Lorenzo ^a   Baldini, Chiara ^b   Formaggio, Fernando ^b   Toniolo, Claudio ^b  

^a UNIVERSITY OF ROME TOR VERGATA   (Italy)

^b UNIVERSITY OF PADOVA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CONFORMATIONS; FLUORESCENCE; HYDROPHOBICITY; SPECTROSCOPIC ANALYSIS;

ANTIMICROBIAL ACTIVITY; HELICAL CONFORMATION; PEPTIDE FOLDING DYNAMICS;

MOLECULAR DYNAMICS;

EID: 33751208605     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp063078w     Document Type: Article

References (35)

1. Rebuffat, S.; Goulard, Ch.; Bodo, B.; Roquebert, M. T. Recent Res. Dev. Org. Bioorg. Chem. 1999, 3, 65-91.
2. Toniolo, C.; Crisma, M.; Formaggio, F.; Peggion, C.; Epand, R. F.; Epand, R. M. Cell. Mol. Life Sci. 2001, 58, 1179-1188.
3. Toniolo, C.; Benedetti, E. Trends Biochem. Sci. 1991, 16, 350-353.
4. Rose, G. D.; Gierasch, L. M.; Smith, J. P. Adv. Protein Chem. 1985, 37, 1-109.
5. Toniolo, C.; Crisma, M.; Formaggio, F.; Peggion, C. Biopolymers 2001, 60, 396-419.
6. Toniolo, C.; Peggion, C.; Crisma, M.; Formaggio, F.; Shui, X.; Eggleston, D. S. Nat. Struct. Biol. 1994, 1, 908-914.
7. Auvin-Guette, C.; Rebuffat, S.; Prigent, Y.; Bodo, B. J. Am. Chem. Soc. 1992, 114, 2170-2174.
8. Monaco, V.; Locardi, E.; Formaggio, F.; Crisma, M.; Mammi, S.; Peggion, E.; Toniolo, C.; Rebuffat, S.; Bodo, B. J. Pept. Res. 1998, 52, 261-272.
9. Venanzi, M.; Gatto, E.; Bocchinfuso, G.; Palleschi, A.; Stella, L.; Formaggio, F.; Toniolo, C. ChemBioChem 2006, 7, 43-45.
10. Monaco, V.; Formaggio, F.; Crisma, M.; Toniolo, C.; Hanson, P.; Millhauser, G. L. Biopolymers 1999, 50, 239-253.
11. Eaton, D. F. Pure Appl. Chem. 1988, 60, 1107-1114.
12. Hyperchem Computational Chemistry; Hyperchem, Inc.: Gainesville, FL, 2002.
13. Barone, V.; Bencini, A.; Cossi, M.; Di Matteo, A.; Matterini, M.; Totti, F. J. Am. Chem. Soc. 1998, 120, 7069-7078.
14. Michl, J.; Thulstrup, E. W. Spectroscopy with Polarized Light; VCH Publishers: New York, 1995; pp 402-406.
15. Green, S. A.; Simpson, D. J.; Zhou, G.; Ho, P. S.; Blough, N. V. J. Am. Chem. Soc. 1990, 112, 7337-7346.
16. Kennedy, D. F.; Crisma, M.; Toniolo, C.; Chapman, D. Biochemistry 1991, 30, 6541-6548.
17. Pispisa, B.; Palleschi, A.; Stella, L.; Venanzi, M.; Mazzuca, C.; Toniolo, C.; Formaggio, F.; Broxterman, Q. B. J. Phys. Chem. B 2002, 106, 5733-5738.
18. Mizushima, S.; Shimanouchi, T.; Tsuboi, M.; Souda, R. J. Am. Chem. Soc. 1952, 74, 270-271.
19. Bui, T. T.; Formaggio, F.; Crisma, M.; Monaco, V.; Toniolo, C.; Hussain, R.; Siligardi, G. J. Chem. Soc., Perkin Trans. 2 2000, 1043-1046.
20. Yang, Z.; Gu, H.; Zhang, Y.; Wang, L.; Xu, B. Chem. Commun. 2004, 208-209.
21. Toniolo, C.; Crisma, M.; Formaggio, F.; Peggion, C.; Monaco, V.; Goulard, C.; Rebuffat, S.; Bodo, B. J. Am. Chem. Soc. 1996, 118, 4952-4958.
22. Andersen, N. H.; Cort, J. R.; Liu, Z.; Sjoberg, S. J.; Tong, H. J. Am. Chem. Soc. 1996, 118, 10309-10310.
23. Vix, A.; Lami, H. Biophys. J. 1995, 68, 1145-1151.
24. Ferreira, S. T.; Stella, L.; Gratton, E. Biophys. J. 1994, 66, 1185-1196.
25. Pispisa, B.; Palleschi, A.; Stella, L.; Venanzi, M.; Toniolo, C. J. Phys. Chem. B 1998, 102, 7890-7898.
26. Pispisa, B.; Palleschi, A.; Mazzuca, C.; Stella, L.; Valeri, A.; Venanzi, M.; Formaggio, F.; Toniolo, C.; Broxterman, Q. B. J. Fluoresc. 2002, 12, 213-217.
27. Lapidus, L. J.; Eaton, W. A.; Hofrichter, J. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 7220-7225.
28. Crisma, M.; Deschamps, J. R.; George, C.; Flippen-Anderson, J. L.; Kaptein, B.; Broxterman, Q. B.; Moretto, A.; Oancea, S.; Jost, M.; Formaggio, F.; Toniolo, C. J. Pept. Res. 2005, 65, 564-579.
29. Pispisa, B.; Palleschi, A.; Venanzi, M.; Zanotti, G. J. Phys. Chem. 1996, 100, 6835-6844.
30. Pispisa, B.; Mazzuca, C.; Palleschi, A.; Stella, L.; Venanzi, M.; Wakselman, M.; Mazaylerat, J.-P.; Rainaldi, M.; Formaggio, F.; Toniolo, C. Chem - Eur. J. 2003, 9, 4084-4093 and references therein.
31. Förster, T. Discuss. Faraday Soc. 1959, 27, 7-17.
32. Dexter, D. L. J. Chem. Phys. 1953, 21, 836-850.
33. 2 explicitly compares in the definition of the quenching efficiency.
34. Eaton, W. A.; Muñoz, V.; Hagen, S. J.; Jas, G. S.; Lapidus, L. J.; Henry, E. R.; Hofrichter, J. Annu. Rev. Biophys. Biomol. Struct. 2000, 29, 327-359.
35. Kubelka, J.; Hofrichter, J.; Eaton, W. A. Curr. Biol. 2004, 14, 76-88.