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Volumn 15, Issue 11, 2006, Pages 2619-2629

The crystal structure of a Cys25 → Ala mutant of human procathepsin S elucidates enzyme-prosequence interactions

Author keywords

Crystal structure; Cysteine proteinase; Procathepsin S; Propeptide

Indexed keywords

ALANINE; CATHEPSIN S; CYSTEINE; ENZYME PRECURSOR;

EID: 33751103711     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.062401806     Document Type: Article
Times cited : (22)

References (56)
  • 2
    • 0026597444 scopus 로고
    • Free R-value - A novel statistical quantity for assessing the accuracy of crystal-structures
    • Brunger, A.T. 1992. Free R-value - A novel statistical quantity for assessing the accuracy of crystal-structures. Nature 355: 472-475.
    • (1992) Nature , vol.355 , pp. 472-475
    • Brunger, A.T.1
  • 4
    • 0030038759 scopus 로고    scopus 로고
    • Potency and selectivity of the cathepsin L propeptide as an inhibitor of cysteine proteases
    • Carmona, E., Dufour, E., Plouffe, C., Takebe, S., Mason, P., Mort, J.S., and Menard, R. 1996. Potency and selectivity of the cathepsin L propeptide as an inhibitor of cysteine proteases. Biochemistry 35: 8149-8157.
    • (1996) Biochemistry , vol.35 , pp. 8149-8157
    • Carmona, E.1    Dufour, E.2    Plouffe, C.3    Takebe, S.4    Mason, P.5    Mort, J.S.6    Menard, R.7
  • 6
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Collaborative Computational Project Number 4 (CCP4)
    • Collaborative Computational Project Number 4 (CCP4). 1994. The CCP4 suite: Programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50: 760-763.
    • (1994) Acta Crystallogr. D Biol. Crystallogr. , vol.50 , pp. 760-763
  • 7
    • 0029902382 scopus 로고    scopus 로고
    • Structure of human procathepsin L reveals the molecular basis of inhibition by the prosegment
    • Coulombe, R., Grochulski, P., Sivaraman, J., Menard, R., Mort, J.S., and Cygler, M. 1996. Structure of human procathepsin L reveals the molecular basis of inhibition by the prosegment. EMBO J. 15: 5492-5503.
    • (1996) EMBO J. , vol.15 , pp. 5492-5503
    • Coulombe, R.1    Grochulski, P.2    Sivaraman, J.3    Menard, R.4    Mort, J.S.5    Cygler, M.6
  • 9
    • 0030915704 scopus 로고    scopus 로고
    • Improved R-factors for diffraction data analysis in macromolecular crystallography
    • Diederichs, K. and Karplus, P.A. 1997. Improved R-factors for diffraction data analysis in macromolecular crystallography. Nat. Struct. Biol. 4: 269-275.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 269-275
    • Diederichs, K.1    Karplus, P.A.2
  • 10
    • 0027068057 scopus 로고
    • Potent slow-binding inhibition of cathepsin B by its propeptide
    • Fox, T., de Miguel, E., Mort, J.S., and Storer, A.C. 1992. Potent slow-binding inhibition of cathepsin B by its propeptide. Biochemistry 31: 12571-12576.
    • (1992) Biochemistry , vol.31 , pp. 12571-12576
    • Fox, T.1    De Miguel, E.2    Mort, J.S.3    Storer, A.C.4
  • 11
    • 0030587773 scopus 로고    scopus 로고
    • The prosequence of procaricain forms an α-helical domain that prevents access to the substrate-binding cleft
    • Groves, M.R., Taylor, M.A., Scott, M., Cummings, N.J., Pickersgill, R.W., and Jenkins, J.A. 1996. The prosequence of procaricain forms an α-helical domain that prevents access to the substrate-binding cleft. Structure 4: 1193-1203.
    • (1996) Structure , vol.4 , pp. 1193-1203
    • Groves, M.R.1    Taylor, M.A.2    Scott, M.3    Cummings, N.J.4    Pickersgill, R.W.5    Jenkins, J.A.6
  • 12
    • 0031826072 scopus 로고    scopus 로고
    • Structural basis for specificity of papain-like cysteine protease proregions toward their cognate enzymes
    • Groves, M.R., Coulombe, R., Jenkins, J., and Cygler, M. 1998. Structural basis for specificity of papain-like cysteine protease proregions toward their cognate enzymes. Proteins 32: 504-514.
    • (1998) Proteins , vol.32 , pp. 504-514
    • Groves, M.R.1    Coulombe, R.2    Jenkins, J.3    Cygler, M.4
  • 13
    • 0034628674 scopus 로고    scopus 로고
    • The α1/2 helical backbone of the prodomains defines the intrinsic inhibitory specificity in the cathepsin L-like cysteine protease subfamily
    • Guo, Y.L., Kurz, U., Schultz, J.E., Lim, C.C., Wiederanders, B., and Schilling, K. 2000. The α1/2 helical backbone of the prodomains defines the intrinsic inhibitory specificity in the cathepsin L-like cysteine protease subfamily. FEBS Lett. 469: 203-207.
    • (2000) FEBS Lett. , vol.469 , pp. 203-207
    • Guo, Y.L.1    Kurz, U.2    Schultz, J.E.3    Lim, C.C.4    Wiederanders, B.5    Schilling, K.6
  • 15
    • 0032496158 scopus 로고    scopus 로고
    • pH-induced conformational transitions of the propeptide of human cathepsin LA role for a molten globule state in zymogen activation
    • Jerala, R., Zerovnik, E., Kidric, J., and Turk, V. 1998. pH-induced conformational transitions of the propeptide of human cathepsin LA role for a molten globule state in zymogen activation. J. Biol. Chem. 273: 11498-11504.
    • (1998) J. Biol. Chem. , vol.273 , pp. 11498-11504
    • Jerala, R.1    Zerovnik, E.2    Kidric, J.3    Turk, V.4
  • 16
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.Y., Cowan, S.W., and Kjeldgaard, M. 1991. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47: 110-119.
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 17
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. and Sander, C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 18
    • 0027394245 scopus 로고
    • Two distinct gene subfamilies within the family of cysteine protease genes
    • Karrer, K.M., Peiffer, S.L., and DiTomas, M.E. 1993. Two distinct gene subfamilies within the family of cysteine protease genes. Proc. Natl. Acad. Sci. 90: 3063-3067.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 3063-3067
    • Karrer, K.M.1    Peiffer, S.L.2    DiTomas, M.E.3
  • 20
    • 0022970858 scopus 로고
    • Cathepsin S. The cysteine proteinase from bovine lymphoid tissue is distinct from cathepsin L (EC 3.4.22.15)
    • Kirschke, H., Schmidt, I., and Wiederanders, B. 1986. Cathepsin S. The cysteine proteinase from bovine lymphoid tissue is distinct from cathepsin L (EC 3.4.22.15). Biochem. J. 240: 455-459.
    • (1986) Biochem. J. , vol.240 , pp. 455-459
    • Kirschke, H.1    Schmidt, I.2    Wiederanders, B.3
  • 21
    • 0029439443 scopus 로고
    • Proteinases 1: Lysosomal cysteine proteinases
    • Kirschke, H., Barrett, A.J., and Rawlings, N.D. 1995. Proteinases 1: Lysosomal cysteine proteinases. Protein Profile 2: 1581-1643.
    • (1995) Protein Profile , vol.2 , pp. 1581-1643
    • Kirschke, H.1    Barrett, A.J.2    Rawlings, N.D.3
  • 23
    • 0033973197 scopus 로고    scopus 로고
    • The use of adenovirus-mediated gene transfer to develop a rat model for photoreceptor degeneration
    • Lai, C.M., Shen, W.Y., Constable, I., and Rakoczy, P.E. 2000. The use of adenovirus-mediated gene transfer to develop a rat model for photoreceptor degeneration. Invest. Ophthalmol. Vis. Sci. 41: 580-584.
    • (2000) Invest. Ophthalmol. Vis. Sci. , vol.41 , pp. 580-584
    • Lai, C.M.1    Shen, W.Y.2    Constable, I.3    Rakoczy, P.E.4
  • 25
    • 0000243829 scopus 로고
    • Procheck - A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., Macarthur, M.W., Moss, D.S., and Thornton, J.M. 1993. Procheck - A program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26: 283-291.
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    Macarthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 26
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews, B.W. 1968. Solvent content of protein crystals. J. Mol. Biol. 33: 491-497.
    • (1968) J. Mol. Biol. , vol.33 , pp. 491-497
    • Matthews, B.W.1
  • 29
    • 84920325457 scopus 로고
    • AMoRe - An automated package for molecular replacement
    • Navaza, J. 1994. AMoRe - An automated package for molecular replacement. Acta Crystallogr. A 50: 157-163.
    • (1994) Acta Crystallogr. A , vol.50 , pp. 157-163
    • Navaza, J.1
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. and Minor, W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276: 307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 33
    • 0036753993 scopus 로고    scopus 로고
    • Foldase function of the cathepsin S proregion is strictly based upon its domain structure
    • Pietschmann, S., Fehn, M., Kaulmann, G., Wenz, I., Wiederanders, B., and Schilling, K. 2002. Foldase function of the cathepsin S proregion is strictly based upon its domain structure. Biol. Chem. 383: 1453-1458.
    • (2002) Biol. Chem. , vol.383 , pp. 1453-1458
    • Pietschmann, S.1    Fehn, M.2    Kaulmann, G.3    Wenz, I.4    Wiederanders, B.5    Schilling, K.6
  • 34
    • 0035896612 scopus 로고    scopus 로고
    • Identification of internal autoproteolytic cleavage sites within the prosegments of recombinant procathepsin B and procathepsin S. Contribution of a plausible unimolecular autoproteolytic event for the processing of zymogens belonging to the papain family
    • Quraishi, O. and Storer, A.C. 2001. Identification of internal autoproteolytic cleavage sites within the prosegments of recombinant procathepsin B and procathepsin S. Contribution of a plausible unimolecular autoproteolytic event for the processing of zymogens belonging to the papain family. J. Biol. Chem. 276: 8118-8124.
    • (2001) J. Biol. Chem. , vol.276 , pp. 8118-8124
    • Quraishi, O.1    Storer, A.C.2
  • 36
    • 0029931108 scopus 로고    scopus 로고
    • Essential role for cathepsin S in MHC class II-associated invariant chain processing and peptide loading
    • Riese, R.J., Wolf, P.R., Bromme, D., Natkin, L.R., Villadangos, J.A., Ploegh, H.L., and Chapman, H.A. 1996. Essential role for cathepsin S in MHC class II-associated invariant chain processing and peptide loading. Immunity 4: 357-366.
    • (1996) Immunity , vol.4 , pp. 357-366
    • Riese, R.J.1    Wolf, P.R.2    Bromme, D.3    Natkin, L.R.4    Villadangos, J.A.5    Ploegh, H.L.6    Chapman, H.A.7
  • 38
    • 0014211618 scopus 로고
    • On the size of the active site in proteases. I Papain
    • Schechter, I. and Berger, A. 1967. On the size of the active site in proteases. I Papain. Biochem. Biophys. Res. Commun. 27: 157-162.
    • (1967) Biochem. Biophys. Res. Commun. , vol.27 , pp. 157-162
    • Schechter, I.1    Berger, A.2
  • 39
    • 0034941496 scopus 로고    scopus 로고
    • Folding incompetence of cathepsin L-like cysteine proteases may be compensated by the highly conserved, domain-building N-terminal extension of the proregion
    • Schilling, K., Pietschmann, S., Fehn, M., Wenz, I., and Wiederanders, B. 2001. Folding incompetence of cathepsin L-like cysteine proteases may be compensated by the highly conserved, domain-building N-terminal extension of the proregion. Biol. Chem. 382: 859-865.
    • (2001) Biol. Chem. , vol.382 , pp. 859-865
    • Schilling, K.1    Pietschmann, S.2    Fehn, M.3    Wenz, I.4    Wiederanders, B.5
  • 40
    • 0026630108 scopus 로고
    • Molecular cloning and expression of human alveolar macrophage cathepsin S, an elastinolytic cysteine protease
    • Shi, G.P., Munger, J.S., Meara, J.P., Rich, D.H., and Chapman, H.A. 1992. Molecular cloning and expression of human alveolar macrophage cathepsin S, an elastinolytic cysteine protease. J. Biol. Chem. 267: 7258-7262.
    • (1992) J. Biol. Chem. , vol.267 , pp. 7258-7262
    • Shi, G.P.1    Munger, J.S.2    Meara, J.P.3    Rich, D.H.4    Chapman, H.A.5
  • 41
    • 0344938353 scopus 로고    scopus 로고
    • Crystal structure of wild-type human procathepsin K
    • Sivaraman, J., Lalumiere, M., Menard, R., and Cygler, M. 1999. Crystal structure of wild-type human procathepsin K. Protein Sci. 8: 283-290.
    • (1999) Protein Sci. , vol.8 , pp. 283-290
    • Sivaraman, J.1    Lalumiere, M.2    Menard, R.3    Cygler, M.4
  • 42
    • 0034723144 scopus 로고    scopus 로고
    • Crystal structure of human procathepsin X: A cysteine protease with the proregion covalently linked to the active site cysteine
    • Sivaraman, J., Nagler, D.K., Zhang, R., Menard, R., and Cygler, M. 2000. Crystal structure of human procathepsin X: A cysteine protease with the proregion covalently linked to the active site cysteine. J. Mol. Biol. 295: 939-951.
    • (2000) J. Mol. Biol. , vol.295 , pp. 939-951
    • Sivaraman, J.1    Nagler, D.K.2    Zhang, R.3    Menard, R.4    Cygler, M.5
  • 43
    • 0024331466 scopus 로고
    • Activity and deletion analysis of recombinant human cathepsin L expressed in Escherichia coli
    • Smith, S.M. and Gottesman, M.M. 1989. Activity and deletion analysis of recombinant human cathepsin L expressed in Escherichia coli. J. Biol. Chem. 264: 20487-20495.
    • (1989) J. Biol. Chem. , vol.264 , pp. 20487-20495
    • Smith, S.M.1    Gottesman, M.M.2
  • 47
    • 0016776255 scopus 로고
    • Acid sulphydryl protease from calf lymph nodes
    • Turnsek, T., Kregar, I., and Lebez, D. 1975. Acid sulphydryl protease from calf lymph nodes. Biochim. Biophys. Acta 403: 514-520.
    • (1975) Biochim. Biophys. Acta , vol.403 , pp. 514-520
    • Turnsek, T.1    Kregar, I.2    Lebez, D.3
  • 48
    • 0028905069 scopus 로고
    • Processing of the papain precursor. The ionization state of a conserved amino acid motif within the Pro region participates in the regulation of intramolecular processing
    • Vernet, T., Berti, P.J., de Montigny, C., Musil, R., Tessier, D.C., Menard, R., Magny, M.C., Storer, A.C., and Thomas, D.Y. 1995. Processing of the papain precursor. The ionization state of a conserved amino acid motif within the Pro region participates in the regulation of intramolecular processing. J. Biol. Chem. 270: 10838-10846.
    • (1995) J. Biol. Chem. , vol.270 , pp. 10838-10846
    • Vernet, T.1    Berti, P.J.2    De Montigny, C.3    Musil, R.4    Tessier, D.C.5    Menard, R.6    Magny, M.C.7    Storer, A.C.8    Thomas, D.Y.9
  • 49
    • 0029882882 scopus 로고    scopus 로고
    • Cathepsin L is an intracellular and extracellular protease in Paramecium tetraurelia. Purification, cloning, sequencing and specific inhibition by its expressed propeptide
    • Volkel, H., Kurz, U., Linder, J., Klumpp, S., Gnau, V., Jung, G., and Schultz, J.E. 1996. Cathepsin L is an intracellular and extracellular protease in Paramecium tetraurelia. Purification, cloning, sequencing and specific inhibition by its expressed propeptide.. Eur. J. Biochem. 238: 198-206.
    • (1996) Eur. J. Biochem. , vol.238 , pp. 198-206
    • Volkel, H.1    Kurz, U.2    Linder, J.3    Klumpp, S.4    Gnau, V.5    Jung, G.6    Schultz, J.E.7
  • 51
    • 0000330205 scopus 로고    scopus 로고
    • On the use of the merging R factor as a quality indicator for X-ray data
    • Weiss, M.S. and Hilgenfeld, R. 1997. On the use of the merging R factor as a quality indicator for X-ray data. J. Appl. Crystallogr. 30: 203-205.
    • (1997) J. Appl. Crystallogr. , vol.30 , pp. 203-205
    • Weiss, M.S.1    Hilgenfeld, R.2
  • 52
    • 0034470261 scopus 로고    scopus 로고
    • Human cathepsins W and F form a new subgroup of cathepsins that is evolutionary separated from the cathepsin B- and L-like cysteine proteases
    • Wex, T., Levy, B., Wex, H., and Bromme, D. 2000. Human cathepsins W and F form a new subgroup of cathepsins that is evolutionary separated from the cathepsin B- and L-like cysteine proteases. Adv. Exp. Med. Biol. 477: 271-280.
    • (2000) Adv. Exp. Med. Biol. , vol.477 , pp. 271-280
    • Wex, T.1    Levy, B.2    Wex, H.3    Bromme, D.4
  • 53
    • 0034471704 scopus 로고    scopus 로고
    • The function of propeptide domains of cysteine proteinases
    • Wiederanders, B. 2000. The function of propeptide domains of cysteine proteinases. Adv. Exp. Med. Biol. 477: 261-270.
    • (2000) Adv. Exp. Med. Biol. , vol.477 , pp. 261-270
    • Wiederanders, B.1
  • 54
    • 0026770758 scopus 로고
    • Phylogenetic conservation of cysteine proteinases. Cloning and expression of a cDNA coding for human cathepsin S
    • Wiederanders, B., Bromme, D., Kirschke, H., von Figura, K., Schmidt, B., and Peters, C. 1992. Phylogenetic conservation of cysteine proteinases. Cloning and expression of a cDNA coding for human cathepsin S. J. Biol. Chem. 267: 13708-13713.
    • (1992) J. Biol. Chem. , vol.267 , pp. 13708-13713
    • Wiederanders, B.1    Bromme, D.2    Kirschke, H.3    Von Figura, K.4    Schmidt, B.5    Peters, C.6
  • 55
    • 0033226989 scopus 로고    scopus 로고
    • Proregion of Bombyx mori cysteine proteinase functions as an intramolecular chaperone to promote proper folding of the mature enzyme
    • Yamamoto, Y., Watabe, S., Kageyama, T., and Takahashi, S.Y. 1999. Proregion of Bombyx mori cysteine proteinase functions as an intramolecular chaperone to promote proper folding of the mature enzyme. Arch. Insect Biochem. Physiol. 42: 167-178.
    • (1999) Arch. Insect Biochem. Physiol. , vol.42 , pp. 167-178
    • Yamamoto, Y.1    Watabe, S.2    Kageyama, T.3    Takahashi, S.Y.4
  • 56
    • 0024409494 scopus 로고
    • Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process
    • Zhu, X.L., Ohta, Y., Jordan, F., and Inouye, M. 1989. Pro-sequence of subtilisin can guide the refolding of denatured subtilisin in an intermolecular process. Nature 339: 483-484.
    • (1989) Nature , vol.339 , pp. 483-484
    • Zhu, X.L.1    Ohta, Y.2    Jordan, F.3    Inouye, M.4


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