-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S., Gish W., Miller W., Myers E., and Lipman D. Basic local alignment search tool. J. Mol. Biol. 215 3 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
2
-
-
0037661304
-
-
U. Catalyurek, M. Gray, T. Kurc, J. Saltz, E. Stahlberg, R. Ferreira, A component-based implementation of multiple sequence alignment, in: Proceedings of the 2003 ACM Symposium on Applied Computing, 2003, pp. 122-126.
-
-
-
-
3
-
-
0042121237
-
Multiple sequence alignment with the clustal series of programs
-
Chenna R., Sugawara H., Koike T., Lopez R., Gibson T., Higgins D., and Thompson J. Multiple sequence alignment with the clustal series of programs. Nucleic Acids Res. 31 13 (2003) 3497-3500
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.13
, pp. 3497-3500
-
-
Chenna, R.1
Sugawara, H.2
Koike, T.3
Lopez, R.4
Gibson, T.5
Higgins, D.6
Thompson, J.7
-
4
-
-
0037251969
-
The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole J., Chai B., Wang Q., Chandra S., Farris R., Kulam S., McGarrel D., Schmidt T., Garrity G., and Tiedje J. The ribosomal database project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31 1 (2003) 442-443
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.1
, pp. 442-443
-
-
Cole, J.1
Chai, B.2
Wang, Q.3
Chandra, S.4
Farris, R.5
Kulam, S.6
McGarrel, D.7
Schmidt, T.8
Garrity, G.9
Tiedje, J.10
-
5
-
-
0034849609
-
HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families
-
de Bakker P., Bateman A., Burke D., Miguel R., Mizuguchi K., Shi J., Shirai H., and Blundell T. HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinformatics 17 8 (2001) 748-749
-
(2001)
Bioinformatics
, vol.17
, Issue.8
, pp. 748-749
-
-
de Bakker, P.1
Bateman, A.2
Burke, D.3
Miguel, R.4
Mizuguchi, K.5
Shi, J.6
Shirai, H.7
Blundell, T.8
-
6
-
-
33750975124
-
-
Oxford University Press, Oxford pp. 135-147
-
Duret L., and Abdeddaim S. Multiple alignment for structural, functional or phylogenetic analyses of homologous sequences, Bioinformatics, Sequence, Structure and Databanks (2000), Oxford University Press, Oxford pp. 135-147
-
(2000)
Multiple alignment for structural, functional or phylogenetic analyses of homologous sequences, Bioinformatics, Sequence, Structure and Databanks
-
-
Duret, L.1
Abdeddaim, S.2
-
7
-
-
0028247213
-
HOVERGEN, a database of homologous vertebrate genes
-
Duret L., Mouchiroud D., and Gouy M. HOVERGEN, a database of homologous vertebrate genes. Nucleic Acids Res. 22 (1994) 2360-2365
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 2360-2365
-
-
Duret, L.1
Mouchiroud, D.2
Gouy, M.3
-
8
-
-
2442659026
-
Multiple sequence alignment in parallel on a workstation cluster
-
Ebedes J., and Datta A. Multiple sequence alignment in parallel on a workstation cluster. Bioinformatics 20 7 (2004) 1193-1195
-
(2004)
Bioinformatics
, vol.20
, Issue.7
, pp. 1193-1195
-
-
Ebedes, J.1
Datta, A.2
-
9
-
-
33750996198
-
-
D. Hillis, C. Moritz, B. Mable (Eds.), Phylogenetic Inference, Molecular Systematics, Sinauer Associates, Inc., Saunderland, 1996.
-
-
-
-
10
-
-
0037379673
-
Phylogeny estimation: traditional and Bayesian approaches
-
Holder M., and Lewis P. Phylogeny estimation: traditional and Bayesian approaches. Nature Rev. Genet. 4 4 (2003) 275-284
-
(2003)
Nature Rev. Genet.
, vol.4
, Issue.4
, pp. 275-284
-
-
Holder, M.1
Lewis, P.2
-
11
-
-
33750981885
-
-
I-Cluster2 〈http://i-cluster2.inrialpes.fr/〉, 2005.
-
-
-
-
12
-
-
0027961628
-
-
T. Jiang, E. Lawler, L. Wang, Aligning sequences via an evolutionary tree: complexity and approximation, in: Proceedings of 26th Annual ACM Symposium on Theory of Computing, 1994, pp. 760-769.
-
-
-
-
13
-
-
0033704133
-
-
S. Jin, A. Bestavros, Popularity-aware greedydual-size web proxy caching algorithms, in: Proceedings of ICDCS 2000, 2000, pp. 254-261.
-
-
-
-
16
-
-
0028181441
-
Hidden Markov models in computational biology: applications to protein modeling
-
Krogh A., Brown M., Mian I., Sjolander K., and Haussler D. Hidden Markov models in computational biology: applications to protein modeling. J. Mol. Biol. 235 5 (1994) 1501-1531
-
(1994)
J. Mol. Biol.
, vol.235
, Issue.5
, pp. 1501-1531
-
-
Krogh, A.1
Brown, M.2
Mian, I.3
Sjolander, K.4
Haussler, D.5
-
17
-
-
0041386069
-
ClustalW-MPI: ClustalW analysis using distributed and parallel computing
-
Li K. ClustalW-MPI: ClustalW analysis using distributed and parallel computing. Bioinformatics 19 12 (2003) 1585-1586
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1585-1586
-
-
Li, K.1
-
18
-
-
33750966517
-
-
D. Mikhailov, H. Cofer, and R. Gomperts, Performance optimization of ClustalW: parallel ClustalW, HT Clustal, and MULTICLUSTAL 〈http://www.sgi.com/industries/sciences/chembio/resources/clustalw〉, 2005.
-
-
-
-
19
-
-
33750975670
-
-
Moab cluster suite 〈http://www.supercluster.org/〉, 2005.
-
-
-
-
20
-
-
33750977005
-
-
National CLUSTER of LInuX Systems 〈http://clusterix.pcz.pl/〉, 2005.
-
-
-
-
21
-
-
0031829993
-
COFFEE: an objective function for multiple sequence alignments
-
Notredame C., Holm L., and Higgins D. COFFEE: an objective function for multiple sequence alignments. Bioinformatics 14 5 (1998) 407-422
-
(1998)
Bioinformatics
, vol.14
, Issue.5
, pp. 407-422
-
-
Notredame, C.1
Holm, L.2
Higgins, D.3
-
22
-
-
2942619012
-
3DCoffee: combining protein sequences and structures within multiple sequence alignments
-
O'Sullivan O., Suhre K., Abergel C., Higgins D., and Notredame C. 3DCoffee: combining protein sequences and structures within multiple sequence alignments. J. Mol. Biol. 340 2 (2004) 385-395
-
(2004)
J. Mol. Biol.
, vol.340
, Issue.2
, pp. 385-395
-
-
O'Sullivan, O.1
Suhre, K.2
Abergel, C.3
Higgins, D.4
Notredame, C.5
-
23
-
-
0023535689
-
Guided self-scheduling: a practical scheduling scheme for parallel supercomputers
-
Polychronopoulos C., and Kuck D. Guided self-scheduling: a practical scheduling scheme for parallel supercomputers. IEEE Trans. Comput. 36 12 (1997) 1425-1439
-
(1997)
IEEE Trans. Comput.
, vol.36
, Issue.12
, pp. 1425-1439
-
-
Polychronopoulos, C.1
Kuck, D.2
-
24
-
-
0034775826
-
-
S. Ratnasamy, P. Francis, M. Handley, R. Karp, S. Schenker, A scalable content-addressable network, in: Proceedings of SIGCOMM '01, 2001, pp. 161-172.
-
-
-
-
25
-
-
0028158628
-
PHD-an automatic mail server for protein secondary structure prediction
-
Rost B., Sander C., and Schneider R. PHD-an automatic mail server for protein secondary structure prediction. CABIOS 10 1 (1990) 53-60
-
(1990)
CABIOS
, vol.10
, Issue.1
, pp. 53-60
-
-
Rost, B.1
Sander, C.2
Schneider, R.3
-
26
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 4 (1987) 406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
27
-
-
0016424695
-
Minimal mutation trees of sequences
-
Sankoff D. Minimal mutation trees of sequences. SIAM J. Appl. Math. 28 (1975) 35-42
-
(1975)
SIAM J. Appl. Math.
, vol.28
, pp. 35-42
-
-
Sankoff, D.1
-
28
-
-
13244259261
-
DiAlign-P: fast pair-wise and multiple sequence alignment using parallel processors
-
Schmollinger M., Nieselt K., Kaufmann M., and Morgenstern B. DiAlign-P: fast pair-wise and multiple sequence alignment using parallel processors. BMC Bioinformatics 5 1 (2004) 128
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
, pp. 128
-
-
Schmollinger, M.1
Nieselt, K.2
Kaufmann, M.3
Morgenstern, B.4
-
29
-
-
33750998557
-
-
Sun Grid Engine 〈http://gridengine.sunsource.net/〉, 2005.
-
-
-
-
30
-
-
0037342499
-
Alignment-free sequence comparison-a review
-
Vinga S., and Almeida J. Alignment-free sequence comparison-a review. Bioinformatics 19 4 (2003) 513-523
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 513-523
-
-
Vinga, S.1
Almeida, J.2
-
32
-
-
33751017429
-
-
J. Zola, CaLi-generic computational buffers library 〈http://icis.pcz.pl/∼zola/CaLi〉, 2005.
-
-
-
|