HOMSTRAD: Adding sequence information to structure-based alignments of homologous protein families

Bioinformatics

Volumn 17, Issue 8, 2001, Pages 748-749

  De Bakker, P I W ^a   Bateman, A ^b   Burke, D F ^a   Miguel, R N ^a   Mizuguchi, K ^a   Shi, J ^a   Shirai, H ^a   Blundell, T L ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ACCURACY; ARTICLE; DATA BASE; INFORMATION SCIENCE; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY;

EID: 0034849609     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/17.8.748     Document Type: Article

References (9)

1. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
2. The Pfam protein families database
3. An iterative structure-assisted approach to sequence alignment and comparative modeling
4. The PROSITE database, its status in 1999
5. HOMSTRAD: A database of protein structure alignments for homologous families
6. JOY: Protein sequence-structure representation and analysis
7. Environment-specific amino acid substitution tables: Tertiary templates and prediction of protein folds
8. Definition of general topological equivalence in protein structures: A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming
9. FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties