Parallelized multiple alignment

Bioinformatics

Volumn 18, Issue 9, 2002, Pages 1270-1271

  Kleinjung, Jens ^a   Douglas, Nigel ^a   Heringa, Jaap ^a  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CALCULATION; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA ANALYSIS; INFORMATION PROCESSING; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TIME;

EID: 0036737434     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/18.9.1270     Document Type: Article

References (8)

1. Feng,D.F. and Doolittle,R.F. (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J. Mol. Evol., 21, 112-125.
2. Gropp, W., Lusk,E., Doss,N. and Skjellum,A. (1996) A high-performance, portable implementation of the MPI Message-Passing Interface standard. Parallel Computing, 22, 789-828.
3. Heringa,J. (1999) Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment. Comp. Chem., 23, 341-364.
4. Heringa,J. (2002) Local weighting schemes of protein multiple sequence alignment. Comp. Chem., 26, 459-477.
5. Notredame,C., Higgins,D.G. and Heringa,J. (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol., 302, 205-217.
6. Pacheco,P.S. (1997) Parallel programming with MPI. Morgan Kaufmann, San Francisco.
7. Thompson,J.D., Higgins,D.G. and Gibson,T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties, and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
8. Thompson,J.D., Plewniak,F. and Poch,O. (1999) BAliBASE: a benchmark alignment database for the evaluation of multiple sequence alignment programs. Bioinformatics, 15, 87-88.