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Volumn 23, Issue 12, 2006, Pages 2326-2335

The unusual adaptive expansion of pancreatic ribonuclease gene in carnivora

Author keywords

Carnivora; Enzyme activity; Mustelidae; Positive selection; RNASE1

Indexed keywords

PANCREATIC RIBONUCLEASE;

EID: 33750964022     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msl101     Document Type: Article
Times cited : (25)

References (57)
  • 1
    • 0014689980 scopus 로고
    • Biological function of pancreatic ribonuclease
    • Barnard EA. 1969. Biological function of pancreatic ribonuclease. Nature. 221:340-344.
    • (1969) Nature , vol.221 , pp. 340-344
    • Barnard, E.A.1
  • 2
    • 0024997196 scopus 로고
    • The primary structure of langur (Presbytis entellus) pancreatic ribonuclease: Adaptive features in digestive enzymes in mammals
    • Beintema JJ. 1990. The primary structure of langur (Presbytis entellus) pancreatic ribonuclease: adaptive features in digestive enzymes in mammals. Mol Biol Evol. 7:470-477.
    • (1990) Mol Biol Evol , vol.7 , pp. 470-477
    • Beintema, J.J.1
  • 3
    • 0001987910 scopus 로고    scopus 로고
    • Evolution of vertebrate ribonucleases: Ribonuclease A superfamily
    • D'Alessio G, Riordan JF, editor. San Diego (CA): Academic Press
    • Beintema JJ, Breukelman HJ, Carsana A, Furia A. 1997. Evolution of vertebrate ribonucleases: ribonuclease A superfamily. In: D'Alessio G, Riordan JF, editor. Ribonucleases, structures and functions. San Diego (CA): Academic Press. p. 245-269.
    • (1997) Ribonucleases, Structures and Functions , pp. 245-269
    • Beintema, J.J.1    Breukelman, H.J.2    Carsana, A.3    Furia, A.4
  • 4
    • 0022521307 scopus 로고
    • Molecular evolution of pancreatic- type ribonucleases
    • Beintema JJ, Fitch WM, Carsana A. 1986. Molecular evolution of pancreatic- type ribonucleases. Mol Biol Evol. 3:262-275.
    • (1986) Mol Biol Evol , vol.3 , pp. 262-275
    • Beintema, J.J.1    Fitch, W.M.2    Carsana, A.3
  • 6
    • 0031697202 scopus 로고    scopus 로고
    • The ribonuclease A superfamily: General discussion
    • Beintema JJ, Kleineidam RG. 1998. The ribonuclease A superfamily: general discussion. Cell Mol Life Sci. 54:825-832.
    • (1998) Cell Mol Life Sci , vol.54 , pp. 825-832
    • Beintema, J.J.1    Kleineidam, R.G.2
  • 8
    • 0020861875 scopus 로고
    • Origin of the duplicated ribonuclease gene in guinea-pig: Comparison of the amino acid sequences with those of two close relatives: Capybara and cuis ribonuclease
    • Beintema JJ, Neuteboom B. 1983. Origin of the duplicated ribonuclease gene in guinea-pig: comparison of the amino acid sequences with those of two close relatives: capybara and cuis ribonuclease. J Mol Evol. 19:145-152.
    • (1983) J Mol Evol , vol.19 , pp. 145-152
    • Beintema, J.J.1    Neuteboom, B.2
  • 14
    • 12844257490 scopus 로고    scopus 로고
    • The ribonuclease A superfamily of mammals and birds: Identifying new members and tracing evolutionary histories
    • Cho S, Beintema JJ, Zhang J. 2005. The ribonuclease A superfamily of mammals and birds: identifying new members and tracing evolutionary histories. Genomics. 85:208-220.
    • (2005) Genomics , vol.85 , pp. 208-220
    • Cho, S.1    Beintema, J.J.2    Zhang, J.3
  • 17
    • 0033209639 scopus 로고    scopus 로고
    • The phylogenetic position of "Acomyinae" (Rodentia, Mammalia) as sistergroup of a murinae+gerbillinae clade: Evidence from the nuclear ribonuclease gene
    • Dubois JY, Catzeflis FM, Beintema JJ. 1999. The phylogenetic position of "Acomyinae" (Rodentia, Mammalia) as sistergroup of a murinae+gerbillinae clade: evidence from the nuclear ribonuclease gene. Mol Phylogenetic Evol. 13: 181-192.
    • (1999) Mol Phylogenetic Evol , vol.13 , pp. 181-192
    • Dubois, J.Y.1    Catzeflis, F.M.2    Beintema, J.J.3
  • 20
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 21
    • 19044400807 scopus 로고    scopus 로고
    • Molecular phylogeny of the Carnivora (Mammalia): Assessing the impact of increased sampling on resolving enigmatic relationships
    • Flynn JJ, Finarelli JA, Zehr S, Hsu J, Nedbal MA. 2005. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Syst Biol. 54:317-337.
    • (2005) Syst Biol , vol.54 , pp. 317-337
    • Flynn, J.J.1    Finarelli, J.A.2    Zehr, S.3    Hsu, J.4    Nedbal, M.A.5
  • 22
    • 0032087257 scopus 로고    scopus 로고
    • Phylogeny of the Carnivora (Mammalia): Congruence vs incompatibility among multiple data sets
    • Flynn JJ, Nedbal MA. 1998. Phylogeny of the Carnivora (Mammalia): congruence vs incompatibility among multiple data sets. Mol Phylogenet Evol. 9:414-426.
    • (1998) Mol Phylogenet Evol , vol.9 , pp. 414-426
    • Flynn, J.J.1    Nedbal, M.A.2
  • 23
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A, Lynch M, Pickett F, Amores A, Yan YL, Postlethwait J. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics. 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 26
    • 0031966661 scopus 로고    scopus 로고
    • The structural basis of molecular adaptation
    • Golding GB, Dean AM. 1998. The structural basis of molecular adaptation. Mol Biol Evol. 15:355-369.
    • (1998) Mol Biol Evol , vol.15 , pp. 355-369
    • Golding, G.B.1    Dean, A.M.2
  • 27
    • 0029886080 scopus 로고    scopus 로고
    • Determinants of cofactor specificity in isocitrate dehydrogenase: Structure of an engineered NADP1/NAD1 specificity- reversal mutant
    • Hurley JH, Chen R, Dean AM. 1996. Determinants of cofactor specificity in isocitrate dehydrogenase: structure of an engineered NADP1/NAD1 specificity- reversal mutant. Biochemistry. 35:5670-5678.
    • (1996) Biochemistry , vol.35 , pp. 5670-5678
    • Hurley, J.H.1    Chen, R.2    Dean, A.M.3
  • 28
    • 0017324265 scopus 로고
    • Modification of amino acids and bovine pancreatic ribonuclease A by kethoxal
    • Iijima H, Patrzyc H, Bello J. 1977. Modification of amino acids and bovine pancreatic ribonuclease A by kethoxal. Biochim Biophys Acta. 491:305-316.
    • (1977) Biochim Biophys Acta , vol.491 , pp. 305-316
    • Iijima, H.1    Patrzyc, H.2    Bello, J.3
  • 29
    • 0032970114 scopus 로고    scopus 로고
    • Inclusion of cetaceans within the order Artiodactyla based on phylogenetic analysis of pancreatic ribonuclease genes
    • Kleineidam RG, Pesole G, Breukelman HJ, Beintema JJ, Kastelein RA. 1999. Inclusion of cetaceans within the order Artiodactyla based on phylogenetic analysis of pancreatic ribonuclease genes. J Mol Evol. 48:360-368.
    • (1999) J Mol Evol , vol.48 , pp. 360-368
    • Kleineidam, R.G.1    Pesole, G.2    Breukelman, H.J.3    Beintema, J.J.4    Kastelein, R.A.5
  • 30
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinformatics. 5:150-163.
    • (2004) Brief Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 31
    • 0026486403 scopus 로고
    • Relative-rate test for nucleotide substitutions between two lineages
    • Li WH, Bousquet J. 1992. Relative-rate test for nucleotide substitutions between two lineages. Mol Biol Evol. 9:1185-1189.
    • (1992) Mol Biol Evol , vol.9 , pp. 1185-1189
    • Li, W.H.1    Bousquet, J.2
  • 32
    • 0034718504 scopus 로고    scopus 로고
    • Purifying selection and birth-and-death evolution in the ubiquitin gene family
    • Nei M, Rogozin LB, Piontkivska H. 2000. Purifying selection and birth-and-death evolution in the ubiquitin gene family. Proc Natl Acad Sci USA. 97:10866-10871.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 10866-10871
    • Nei, M.1    Rogozin, L.B.2    Piontkivska, H.3
  • 35
    • 0028280685 scopus 로고
    • Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family
    • Ota T, Nei M. 1994. Divergent evolution and evolution by the birth-and-death process in the immunoglobulin VH gene family. Mol Biol Evol. 11:469-482.
    • (1994) Mol Biol Evol , vol.11 , pp. 469-482
    • Ota, T.1    Nei, M.2
  • 36
    • 0037387390 scopus 로고    scopus 로고
    • Birth-and-death evolution in primate MHC class I genes: Divergence time estimates
    • Piontkivska H, Nei M. 2003. Birth-and-death evolution in primate MHC class I genes: divergence time estimates. Mol Biol Evol. 20:601-609.
    • (2003) Mol Biol Evol , vol.20 , pp. 601-609
    • Piontkivska, H.1    Nei, M.2
  • 37
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics. 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 38
    • 0034129663 scopus 로고    scopus 로고
    • RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
    • Robinson-Rechavi M, Huchon D. 2000. RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics. 16:296-297.
    • (2000) Bioinformatics , vol.16 , pp. 296-297
    • Robinson-Rechavi, M.1    Huchon, D.2
  • 40
    • 0001912211 scopus 로고
    • The feeding ecology of giant pandas and Asiatic black bears in the Tanjiahe Reserve, China
    • Gittleman JL, editor. New York: Cornell University Press
    • Schaller GB, Teng QT, Johnson KG, Wang XM, Shen HM, Hu JC. 1989. The feeding ecology of giant pandas and Asiatic black bears in the Tanjiahe Reserve, China. In: Gittleman JL, editor. Carnivore behavior, ecology, and evolution. New York: Cornell University Press. p. 212-241.
    • (1989) Carnivore Behavior, Ecology, and Evolution , pp. 212-241
    • Schaller, G.B.1    Teng, Q.T.2    Johnson, K.G.3    Wang, X.M.4    Shen, H.M.5    Hu, J.C.6
  • 42
    • 0031671323 scopus 로고    scopus 로고
    • Human extracellular ribonuclease: Multiplicity, molecular diversity and catalytic properties of the major RNase types
    • Sorrentino S. 1998. Human extracellular ribonuclease: multiplicity, molecular diversity and catalytic properties of the major RNase types. Cell Mol Life Sci. 54:785-794.
    • (1998) Cell Mol Life Sci , vol.54 , pp. 785-794
    • Sorrentino, S.1
  • 44
    • 0035215112 scopus 로고    scopus 로고
    • Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites
    • Suzuki Y, Nei M. 2001. Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites. Mol Biol Evol. 18:2179-2185.
    • (2001) Mol Biol Evol , vol.18 , pp. 2179-2185
    • Suzuki, Y.1    Nei, M.2
  • 45
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 47
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R. 2005. Bayes empirical Bayes inference of amino acid sites under positive selection. Mol Biol Evol. 22:1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 48
    • 7444261392 scopus 로고    scopus 로고
    • Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes
    • Yu L, Li QW, Ryder OA, Zhang YP. 2004. Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes. Mol Phylogenet Evol. 33:694-705.
    • (2004) Mol Phylogenet Evol , vol.33 , pp. 694-705
    • Yu, L.1    Li, Q.W.2    Ryder, O.A.3    Zhang, Y.P.4
  • 49
    • 33746172089 scopus 로고    scopus 로고
    • Phylogeny of the caniform carnivora: Evidence from multiple genes
    • Yu L, Zhang YP. 2006. Phylogeny of the caniform carnivora: evidence from multiple genes. Genetica. 127:65-79.
    • (2006) Genetica , vol.127 , pp. 65-79
    • Yu, L.1    Zhang, Y.P.2
  • 50
    • 0041571683 scopus 로고    scopus 로고
    • Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions
    • Zhang J. 2003. Parallel functional changes in the digestive RNases of ruminants and colobines by divergent amino acid substitutions. Mol Biol Evol. 20:1310-1317.
    • (2003) Mol Biol Evol , vol.20 , pp. 1310-1317
    • Zhang, J.1
  • 51
    • 33745543629 scopus 로고    scopus 로고
    • Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys
    • Zhang J. 2006. Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys. Nat Genet. 38:819-823.
    • (2006) Nat Genet , vol.38 , pp. 819-823
    • Zhang, J.1
  • 52
    • 0034712830 scopus 로고    scopus 로고
    • Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection
    • Zhang J, Dyer KD, Rosenberg HF. 2000. Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection. Proc Natl Acad Sci USA. 97:4701-5706.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 4701-5706
    • Zhang, J.1    Dyer, K.D.2    Rosenberg, H.F.3
  • 53
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z. 2005. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol. 22:2472-2479.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 54
    • 0037117541 scopus 로고    scopus 로고
    • Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates
    • Zhang J, Rosenberg HF. 2002. Complementary advantageous substitutions in the evolution of an antiviral RNase of higher primates. Proc Natl Acad Sci USA. 99:5486-5491.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 5486-5491
    • Zhang, J.1    Rosenberg, H.F.2
  • 55
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang J, Rosenberg HF, Nei M. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci USA. 95:3708-3713.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3
  • 56
    • 0036544871 scopus 로고    scopus 로고
    • Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey
    • Zhang J, Zhang YP, Rosenberg HF. 2002. Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nat Genet. 30:411-415.
    • (2002) Nat Genet , vol.30 , pp. 411-415
    • Zhang, J.1    Zhang, Y.P.2    Rosenberg, H.F.3
  • 57
    • 0036368073 scopus 로고    scopus 로고
    • Structural and functional adaptations of the sable digestive tract to plant food
    • Zharova GK, Naumova EI. 2002. Structural and functional adaptations of the sable digestive tract to plant food. Dokl Biol Sci. 382:31-33.
    • (2002) Dokl Biol Sci , vol.382 , pp. 31-33
    • Zharova, G.K.1    Naumova, E.I.2


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