-
1
-
-
0037440652
-
Molecular evolution of eukaryotic genomes: Hemiascomycetous yeast spliceosomal introns
-
11 co-authors
-
Bon E, Casaregola S, Blandin G, et al. (11 co-authors). 2003. Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns. Nucleic Acids Res. 31:1121-1135.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 1121-1135
-
-
Bon, E.1
Casaregola, S.2
Blandin, G.3
-
2
-
-
3543107924
-
A phylogeny of ceanorhabditis reveals frequent loss of introns during nematode evolution
-
Cho S, Jin SW, Cohen A, Ellis RE. 2004. A phylogeny of ceanorhabditis reveals frequent loss of introns during nematode evolution. Genome Res. 14:1207-1220.
-
(2004)
Genome Res
, vol.14
, pp. 1207-1220
-
-
Cho, S.1
Jin, S.W.2
Cohen, A.3
Ellis, R.E.4
-
3
-
-
3843113189
-
Origins of recently gained introns in Caenorhabditis
-
Coghlan A, Wolfe KH. 2004. Origins of recently gained introns in Caenorhabditis. Proc Natl Acad Sci USA. 101:11362-11367.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11362-11367
-
-
Coghlan, A.1
Wolfe, K.H.2
-
4
-
-
0038306163
-
The emergence of a synthetic theory of intron evolution
-
de Souza SJ. 2003. The emergence of a synthetic theory of intron evolution. Genetica. 118:117-121.
-
(2003)
Genetica
, vol.118
, pp. 117-121
-
-
De Souza, S.J.1
-
5
-
-
0037058978
-
Large-scale comparison of intron positions among animal, plant, and fungal genes
-
Fedorov A, Merican AF, Gilbert W. 2002. Large-scale comparison of intron positions among animal, plant, and fungal genes. Proc Natl Acad Sci USA. 99:16128-16133.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16128-16133
-
-
Fedorov, A.1
Merican, A.F.2
Gilbert, W.3
-
7
-
-
18344415274
-
Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes
-
RESEARCH0057
-
Guiliano DB, Hall N, Jones SJ, Clark LN, Corton CH, Barrell BG, Blaxter ML. 2002. Conservation of long-range synteny and microsynteny between the genomes of two distantly related nematodes. Genome Biol. 3:RESEARCH0057.
-
(2002)
Genome Biol
, vol.3
-
-
Guiliano, D.B.1
Hall, N.2
Jones, S.J.3
Clark, L.N.4
Corton, C.H.5
Barrell, B.G.6
Blaxter, M.L.7
-
8
-
-
0034721722
-
Genomic analysis of gene expression in C. elegans
-
Hill AA, Hunter CP, Tsung BT, Tucker-Kellogg G, Brown EL. 2000. Genomic analysis of gene expression in C. elegans. Science. 290:809-812.
-
(2000)
Science
, vol.290
, pp. 809-812
-
-
Hill, A.A.1
Hunter, C.P.2
Tsung, B.T.3
Tucker-Kellogg, G.4
Brown, E.L.5
-
9
-
-
0031844194
-
Evolutionary relationship of plant catalase genes inferred from exon-intron structures: Isozyme divergence after the separation of monocots and dicots
-
Iwamoto M, Maekawa M, Saito A, Higo H, Higo K. 1998. Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots. Theor Appl Genet. 97:9-19.
-
(1998)
Theor Appl Genet
, vol.97
, pp. 9-19
-
-
Iwamoto, M.1
Maekawa, M.2
Saito, A.3
Higo, H.4
Higo, K.5
-
11
-
-
0033832676
-
Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment
-
Kent WJ, Zahler AM. 2000. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Res. 10:1115-1125.
-
(2000)
Genome Res
, vol.10
, pp. 1115-1125
-
-
Kent, W.J.1
Zahler, A.M.2
-
12
-
-
2942669900
-
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss
-
Kiontke K, Gavin NP, Raynes Y, Rehrig C, Piano F, Fitch DH. 2004. Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss. Proc Natl Acad Sci USA. 101:9003-9008.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9003-9008
-
-
Kiontke, K.1
Gavin, N.P.2
Raynes, Y.3
Rehrig, C.4
Piano, F.5
Fitch, D.H.6
-
13
-
-
33745088890
-
Intron gain and loss in segmentally duplicated genes in rice
-
Lin H, Zhu W, Silva JC, Gu X, Buell CR. 2006. Intron gain and loss in segmentally duplicated genes in rice. Genome Biol. 7:R41.
-
(2006)
Genome Biol
, vol.7
-
-
Lin, H.1
Zhu, W.2
Silva, J.C.3
Gu, X.4
Buell, C.R.5
-
14
-
-
0037062440
-
Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
-
Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M. 2002. Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci USA. 99:8121-8126.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8121-8126
-
-
Llopart, A.1
Comeron, J.M.2
Brunet, F.G.3
Lachaise, D.4
Long, M.5
-
15
-
-
3843106810
-
Worm genomes hold the smoking guns of intron gain
-
Logsdon JM Jr. 2004. Worm genomes hold the smoking guns of intron gain. Proc Natl Acad Sci USA. 101:11195-11196.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11195-11196
-
-
Logsdon Jr., J.M.1
-
16
-
-
13144253092
-
Molecular evolution: Recent cases of spliceosomal intron gain?
-
Logsdon JM Jr, Stoltzfus A, Doolittle WF. 1998. Molecular evolution: recent cases of spliceosomal intron gain? Curr Biol. 8:R560-R563.
-
(1998)
Curr Biol
, vol.8
-
-
Logsdon Jr., J.M.1
Stoltzfus, A.2
Doolittle, W.F.3
-
17
-
-
33644783626
-
Introns and the origin of nucleus-cytosol compartmentalization
-
Martin W, Koonin EV. 2006. Introns and the origin of nucleus-cytosol compartmentalization. Nature. 440:41-45.
-
(2006)
Nature
, vol.440
, pp. 41-45
-
-
Martin, W.1
Koonin, E.V.2
-
18
-
-
0038780670
-
Eukaryotic intron loss
-
Mourier T, Jeffares DC. 2003. Eukaryotic intron loss. Science. 300:1393.
-
(2003)
Science
, vol.300
, pp. 1393
-
-
Mourier, T.1
Jeffares, D.C.2
-
19
-
-
14044252770
-
Patterns of intron gain and loss in fungi
-
Nielsen CB, Friedman B, Birren B, Burge CB, Galagan JE. 2004. Patterns of intron gain and loss in fungi. PLoS Biol. 2:e422.
-
(2004)
PLoS Biol
, vol.2
-
-
Nielsen, C.B.1
Friedman, B.2
Birren, B.3
Burge, C.B.4
Galagan, J.E.5
-
21
-
-
0042921194
-
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution
-
Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV. 2003. Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution. Curr Biol. 13:1512-1517.
-
(2003)
Curr Biol
, vol.13
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
Mirkin, B.G.4
Koonin, E.V.5
-
22
-
-
19944429392
-
The origin of recent introns: Transposons?
-
Roy SW. 2004. The origin of recent introns: transposons? Genome Biol. 5:251.
-
(2004)
Genome Biol
, vol.5
, pp. 251
-
-
Roy, S.W.1
-
23
-
-
0037795455
-
Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain
-
Roy SW, Fedorov A, Gilbert W. 2003. Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc Natl Acad Sci USA. 100:7158-7162.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7158-7162
-
-
Roy, S.W.1
Fedorov, A.2
Gilbert, W.3
-
24
-
-
33644847698
-
The evolution of spliceosomal introns: Patterns, puzzles and progress
-
Roy SW, Gilbert W. 2006. The evolution of spliceosomal introns: patterns, puzzles and progress. Nat Rev Genet. 7:211-221.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 211-221
-
-
Roy, S.W.1
Gilbert, W.2
-
25
-
-
33744789972
-
Very little intron loss/gain in Plasmodium: Intron loss/gain mutation rates and intron number
-
Roy SW, Hartl DL. 2006. Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number. Genome Research. 16:750-756.
-
(2006)
Genome Research
, vol.16
, pp. 750-756
-
-
Roy, S.W.1
Hartl, D.L.2
-
26
-
-
33748797692
-
Very little intron gain in Entamoeba hystolitica genes laterally transferred from prokaryotes
-
Roy SW, Irimia M, Penny D. 2006. Very little intron gain in Entamoeba hystolitica genes laterally transferred from prokaryotes. Mol Biol Evol. 23:1824-1827.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1824-1827
-
-
Roy, S.W.1
Irimia, M.2
Penny, D.3
-
27
-
-
0034842928
-
Generation of a database containing discordant intron positions in eukaryotic genes (MIDB)
-
Sakharkar MK, Tan TW, de Souza SJ. 2001. Generation of a database containing discordant intron positions in eukaryotic genes (MIDB). Bioinformatics. 17:671-675.
-
(2001)
Bioinformatics
, vol.17
, pp. 671-675
-
-
Sakharkar, M.K.1
Tan, T.W.2
De Souza, S.J.3
-
28
-
-
0035930701
-
Miniature genome in the marine chordate Oikopleura dioica
-
11 co-authors
-
Seo H-C, Kube M, Edvardsen RB, et al. (11 co-authors). 2001. Miniature genome in the marine chordate Oikopleura dioica. Science. 294:2506.
-
(2001)
Science
, vol.294
, pp. 2506
-
-
Seo, H.-C.1
Kube, M.2
Edvardsen, R.B.3
-
29
-
-
33746001953
-
A high density of ancient spliceosomal introns in oxymonad excavates
-
Slamovits CH, Keeling PJ. 2006. A high density of ancient spliceosomal introns in oxymonad excavates. BMC Evol Biol. 6:34.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 34
-
-
Slamovits, C.H.1
Keeling, P.J.2
-
30
-
-
33646904207
-
Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans
-
Stajich JE, Dietrich FS. 2006. Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans. Eukaryotic Cell. 5:789-793.
-
(2006)
Eukaryotic Cell
, vol.5
, pp. 789-793
-
-
Stajich, J.E.1
Dietrich, F.S.2
-
33
-
-
0033621045
-
Late changes in spliceosomal introns define clades in vertebrate evolution
-
Venkatesh B, Ning Y, Brenner S. 1999. Late changes in spliceosomal introns define clades in vertebrate evolution. Proc Natl Acad Sci USA. 96:10267-10271.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 10267-10271
-
-
Venkatesh, B.1
Ning, Y.2
Brenner, S.3
-
34
-
-
0036132976
-
Dynamic insertion-deletion of introns in deuterostome EF-1 alpha genes
-
Wada H, Kobayashi M, Sato R, Satoh N, Miyasaka H, Shirayama Y. 2002. Dynamic insertion-deletion of introns in deuterostome EF-1 alpha genes. J Mol Evol. 54:118-128.
-
(2002)
J Mol Evol
, vol.54
, pp. 118-128
-
-
Wada, H.1
Kobayashi, M.2
Sato, R.3
Satoh, N.4
Miyasaka, H.5
Shirayama, Y.6
-
35
-
-
0035460444
-
Footprints of primordial introns on the eukaryotic genome: Still no clear traces
-
Wolf YI, Kondrashov FA, Koonin EV. 2001. Footprints of primordial introns on the eukaryotic genome: still no clear traces. Trends Genet. 17:499-450.
-
(2001)
Trends Genet
, vol.17
, pp. 499-1450
-
-
Wolf, Y.I.1
Kondrashov, F.A.2
Koonin, E.V.3
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