-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R.I., Ludwig, W., and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microb Rev 59: 143-169.
-
(1995)
Microb Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
4
-
-
0242668357
-
mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil
-
Bürgmann, H., Widmer, F., Sigler, W.V., and Zeyer, J. (2003) mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil. Appl Environ Microbiol 69: 1928-1935.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1928-1935
-
-
Bürgmann, H.1
Widmer, F.2
Sigler, W.V.3
Zeyer, J.4
-
5
-
-
4344560389
-
The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: A case of lateral gene transfer?
-
Cantera, J.J.L., Kawasaki, H., and Seki, T. (2004) The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: a case of lateral gene transfer? Microbiology 150: 2237-2246.
-
(2004)
Microbiology
, vol.150
, pp. 2237-2246
-
-
Cantera, J.J.L.1
Kawasaki, H.2
Seki, T.3
-
6
-
-
51249169259
-
A simple and efficient method for isolating RNA from pine trees
-
Chang, S., Puryear, J., and Cairney, J. (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Rep 11: 113-116.
-
(1993)
Plant Mol Biol Rep
, vol.11
, pp. 113-116
-
-
Chang, S.1
Puryear, J.2
Cairney, J.3
-
7
-
-
0037640024
-
Phylogeny and characterization of three nifH-homologous genes from Paenibacillus azotofixans
-
Choo, Q.-C., Samian, M.-R., and Najimudin, N. (2003) Phylogeny and characterization of three nifH-homologous genes from Paenibacillus azotofixans. Appl Environ Microbiol 69: 3658-3662.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3658-3662
-
-
Choo, Q.-C.1
Samian, M.-R.2
Najimudin, N.3
-
8
-
-
33644873463
-
EMBL Nucleotide Sequence Database: Developments in 2005
-
10.1093/nar/gkj130
-
Cochrane, G., Aldebert, P., Althorpe, N., Andersson, M., Baker, W., Baldwin, A., et al. (2006). EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Res 34: D10-D15. 10.1093/nar/gkj130.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Cochrane, G.1
Aldebert, P.2
Althorpe, N.3
Andersson, M.4
Baker, W.5
Baldwin, A.6
-
9
-
-
0034993324
-
Burkholderia fungorum sp. nov. and Burkholderia Caledonia sp. nov., two new species isolated from the environment, animals and human clinical samples
-
Coenye, T., Laevens, S., Willems, A., Ohlén, M., Hannant, W., Govan, J.R.W., et al. (2001) Burkholderia fungorum sp. nov. and Burkholderia Caledonia sp. nov., two new species isolated from the environment, animals and human clinical samples. Int J Syst Evol Microbiol 51: 1099-1107.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 1099-1107
-
-
Coenye, T.1
Laevens, S.2
Willems, A.3
Ohlén, M.4
Hannant, W.5
Govan, J.R.W.6
-
10
-
-
4344685941
-
Endophytic nitrogen fixation in dune grass (Ammophila arenaria and Elymus mollis) from Oregon
-
Dalton, D.A., Kramer, S., Azios, N., Fusaro, S., Cahill, E., and Kennedy, C. (2004) Endophytic nitrogen fixation in dune grass (Ammophila arenaria and Elymus mollis) from Oregon. FEMS Microb Ecol 49: 469-479.
-
(2004)
FEMS Microb Ecol
, vol.49
, pp. 469-479
-
-
Dalton, D.A.1
Kramer, S.2
Azios, N.3
Fusaro, S.4
Cahill, E.5
Kennedy, C.6
-
11
-
-
0036151243
-
Methylocapsa acidiphila gen. nov., sp. nov., a novel methaneoxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog
-
Dedysh, S.N., Khmelenina, V.N., Suzina, N.E., Trotsenko, Y.A., Semrau, J.D., Liesack, W., et al. (2002) Methylocapsa acidiphila gen. nov., sp. nov., a novel methaneoxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Int J Syst Evol Microbiol 52: 251-261.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 251-261
-
-
Dedysh, S.N.1
Khmelenina, V.N.2
Suzina, N.E.3
Trotsenko, Y.A.4
Semrau, J.D.5
Liesack, W.6
-
12
-
-
0037206899
-
Quantifying nitrogen-fixation in feather moss carpets of boreal forests
-
DeLuca, T.H., Zachrisson, O., Nilsson, M.-C., and Sellstedt, A. (2002) Quantifying nitrogen-fixation in feather moss carpets of boreal forests. Nature 419: 917-920.
-
(2002)
Nature
, vol.419
, pp. 917-920
-
-
DeLuca, T.H.1
Zachrisson, O.2
Nilsson, M.-C.3
Sellstedt, A.4
-
13
-
-
0032798572
-
Endophytic expression of nifH genes of Azoarcus sp. strain BH72 in rice roots
-
Egener, T., Hurek, T., and Rhienhold-Heurek, B. (1999) Endophytic expression of nifH genes of Azoarcus sp. strain BH72 in rice roots. Mol Plant Microbe Interact 12: 813-819.
-
(1999)
Mol Plant Microbe Interact
, vol.12
, pp. 813-819
-
-
Egener, T.1
Hurek, T.2
Rhienhold-Heurek, B.3
-
14
-
-
0035515425
-
Endophytic colonization and in planta nitrogen fixation by a Herbaspirillum sp. isolated from wild rice species
-
Elbeltagy, A., Nishioka, K., Sato, T., Suzuki, H., Ye, B., Hamada, T., et al. (2001) Endophytic colonization and in planta nitrogen fixation by a Herbaspirillum sp. isolated from wild rice species. Appl Environ Microbiol 67: 5285-5293.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5285-5293
-
-
Elbeltagy, A.1
Nishioka, K.2
Sato, T.3
Suzuki, H.4
Ye, B.5
Hamada, T.6
-
15
-
-
0035378204
-
Burkholderia, a genus rich in plant-associated nitrogen fixers with wide environmental and geographical distribution
-
Estrada-de Los Santos, P., Bustillos-Critales, R., and Caballero-Mellado, J. (2001) Burkholderia, a genus rich in plant-associated nitrogen fixers with wide environmental and geographical distribution. Appl Environ Microbiol 67: 2790-2798.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 2790-2798
-
-
Estrada-de Los Santos, P.1
Bustillos-Critales, R.2
Caballero-Mellado, J.3
-
16
-
-
32944456535
-
Mycorrhiza helper bacteria: A promising model for the genomic analysis of fungal-bacterial interactions
-
Frey-Klett, P., and Garbaye, J. (2005) Mycorrhiza helper bacteria: a promising model for the genomic analysis of fungal-bacterial interactions. New Phytol 168: 4-8.
-
(2005)
New Phytol
, vol.168
, pp. 4-8
-
-
Frey-Klett, P.1
Garbaye, J.2
-
17
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycete-application to the identification of mycorrhizae and rusts
-
Gardes, M., and Bruns, T.D. (1993) ITS primers with enhanced specificity for basidiomycete-application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
-
(1993)
Mol Ecol
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
18
-
-
0024318204
-
Acetobacter diazotrophicus sp. nov., a nitrogen-fixing acetic acid bacterium associated with sugarcane
-
Gills, M., Kersters, K., Hoste, B., Janssens, D., Kroppenstedt, R.M., Stephan, M.P., et al. (1989) Acetobacter diazotrophicus sp. nov., a nitrogen-fixing acetic acid bacterium associated with sugarcane. Int J Syst Bacteriol 39: 361-364.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 361-364
-
-
Gills, M.1
Kersters, K.2
Hoste, B.3
Janssens, D.4
Kroppenstedt, R.M.5
Stephan, M.P.6
-
19
-
-
18144395810
-
Contamination of diverse nifH and nifH-like DNA into commercial PCR primers
-
Goto, M., Ando, S., Hachisuka, Y., and Yoneyama, T. (2005) Contamination of diverse nifH and nifH-like DNA into commercial PCR primers. FEMS Microbiol Lett 246: 33-38.
-
(2005)
FEMS Microbiol Lett
, vol.246
, pp. 33-38
-
-
Goto, M.1
Ando, S.2
Hachisuka, Y.3
Yoneyama, T.4
-
20
-
-
0035094209
-
Endophytic colonisation of rice by a diazotrophic strain of Serratia marcescens
-
Gyaneshwar, P., James, E.K., Mathan, N., Reddy, P.M., Rheinhold-Hurek, B., and Ladha, J.K. (2001) Endophytic colonisation of rice by a diazotrophic strain of Serratia marcescens. J Bacteriol 183: 2634-2645.
-
(2001)
J Bacteriol
, vol.183
, pp. 2634-2645
-
-
Gyaneshwar, P.1
James, E.K.2
Mathan, N.3
Reddy, P.M.4
Rheinhold-Hurek, B.5
Ladha, J.K.6
-
21
-
-
0003670592
-
-
Massachusetts, MA, USA: Sinauer Associations
-
Hall, B.G. (2001) Phylogenetic Trees Made Easy. Massachusetts, MA, USA: Sinauer Associations.
-
(2001)
Phylogenetic Trees Made Easy
-
-
Hall, B.G.1
-
22
-
-
0036053164
-
nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass
-
Hamelin, J., Formin, N., Tarnawski, S., Teyssier-Cuvelle, S., and Aragno, M. (2002) nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass. Environ Microbiol 4: 477-481.
-
(2002)
Environ Microbiol
, vol.4
, pp. 477-481
-
-
Hamelin, J.1
Formin, N.2
Tarnawski, S.3
Teyssier-Cuvelle, S.4
Aragno, M.5
-
23
-
-
33645038747
-
Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris)
-
Izumi, H., Anderson, I.C., Alexander, I.J., Killham, K., and Moore, E.R.B. (2006) Endobacteria in some ectomycorrhiza of Scots pine (Pinus sylvestris). FEMS Mirob Ecol 56: 34-43.
-
(2006)
FEMS Mirob Ecol
, vol.56
, pp. 34-43
-
-
Izumi, H.1
Anderson, I.C.2
Alexander, I.J.3
Killham, K.4
Moore, E.R.B.5
-
24
-
-
3142603143
-
Non-symbiotic bacterial diazotrophs in crop-farming systems: Can their potential for plant growth promotion be better exploited?
-
Kennedy, I.R., Choudhury, A.T.M.A., and Kecskés, M.L. (2004) Non-symbiotic bacterial diazotrophs in crop-farming systems: can their potential for plant growth promotion be better exploited? Soil Biol Biochem 36: 1229-1244.
-
(2004)
Soil Biol Biochem
, vol.36
, pp. 1229-1244
-
-
Kennedy, I.R.1
Choudhury, A.T.M.A.2
Kecskés, M.L.3
-
25
-
-
27444441768
-
Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice
-
Knauth, S., Hurek, T., Brar, D., and Rheinhold-Hurek, B. (2005) Influence of different Oryza cultivars on expression of nifH gene pools in roots of rice. Environ Microbiol 7: 1725-1733.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1725-1733
-
-
Knauth, S.1
Hurek, T.2
Brar, D.3
Rheinhold-Hurek, B.4
-
26
-
-
0001719805
-
Nitrogen-fixing (acetylene-reducing) bacteria associated with ectomycorrhizae of Douglas-fir
-
Li, C.Y. (1987) Nitrogen-fixing (acetylene-reducing) bacteria associated with ectomycorrhizae of Douglas-fir. Plant Soil 98: 425-428.
-
(1987)
Plant Soil
, vol.98
, pp. 425-428
-
-
Li, C.Y.1
-
27
-
-
0033823656
-
Molecular analysis of diazotroph diversity in the rhizosphere of the smooth cordgrass, Spartina alterniflora
-
Lovell, C.R., Piceno, Y.M., Quattro, J.M., and Bagwell, C.E. (2000) Molecular analysis of diazotroph diversity in the rhizosphere of the smooth cordgrass, Spartina alterniflora. Appl Environ Microbiol 66: 3814-3822.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3814-3822
-
-
Lovell, C.R.1
Piceno, Y.M.2
Quattro, J.M.3
Bagwell, C.E.4
-
28
-
-
84982381788
-
Nitrogen nutrition of pines on the sands of Culbin forest, Morayshire
-
Miller, H.G. (1969) Nitrogen nutrition of pines on the sands of Culbin forest, Morayshire. J Sci Food Agric 20: 417-419.
-
(1969)
J Sci Food Agric
, vol.20
, pp. 417-419
-
-
Miller, H.G.1
-
29
-
-
0035143726
-
Nitrogen fixation genes in an endosymbiotic Burkholderia strain
-
Minerdi, D., Fani, R., Gallo, R., Boarino, A., and Bonfante, P. (2001) Nitrogen fixation genes in an endosymbiotic Burkholderia strain. Appl Environ Microbiol 67: 725-732.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 725-732
-
-
Minerdi, D.1
Fani, R.2
Gallo, R.3
Boarino, A.4
Bonfante, P.5
-
31
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R., and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85: 2444-2448.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
32
-
-
0033916215
-
Detection of intracellular bacteria in the buds of Scotch pine (Pinus sylvestris) by in situ hybridization
-
Pirttilä, A.M., Laukkanen, H., Pospiech, H., Myllylä, R., and Hohtola, A. (2000) Detection of intracellular bacteria in the buds of Scotch pine (Pinus sylvestris) by in situ hybridization. Appl Environ Microbiol 66: 3073-3077.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3073-3077
-
-
Pirttilä, A.M.1
Laukkanen, H.2
Pospiech, H.3
Myllylä, R.4
Hohtola, A.5
-
33
-
-
0242523909
-
The uncultured microbial majority
-
Rappé, S.M., and Giovannoni, S.J. (2003) The uncultured microbial majority. Ann Rev Microbiol 57: 369-394.
-
(2003)
Ann Rev Microbiol
, vol.57
, pp. 369-394
-
-
Rappé, S.M.1
Giovannoni, S.J.2
-
34
-
-
0348014402
-
Endophytic nifH gene diversity in African sweet potato
-
Reiter, B., Bürgmann, H., Burg, K., and Sessitsch, A. (2003) Endophytic nifH gene diversity in African sweet potato. Can J Microbiol 49: 549-555.
-
(2003)
Can J Microbiol
, vol.49
, pp. 549-555
-
-
Reiter, B.1
Bürgmann, H.2
Burg, K.3
Sessitsch, A.4
-
35
-
-
18844477676
-
Diazotrophic bacteria in root-free soil and in the root zone of pine (Pinus sylvestris L.) and oak (Quercus robber L.)
-
Różycki, H., Dahm, H., Strzelczyk, E., and Li, C.Y. (1999) Diazotrophic bacteria in root-free soil and in the root zone of pine (Pinus sylvestris L.) and oak (Quercus robber L.). Appl Soil Ecol 12: 239-250.
-
(1999)
Appl Soil Ecol
, vol.12
, pp. 239-250
-
-
Rózycki, H.1
Dahm, H.2
Strzelczyk, E.3
Li, C.Y.4
-
39
-
-
19544380071
-
Aerobic methanotrophic bacteria of cold ecosystems
-
Trotsenko, Y.A., and Khmelenina, V.N. (2005) Aerobic methanotrophic bacteria of cold ecosystems. FEMS Microbiol Ecol 53: 15-26.
-
(2005)
FEMS Microbiol Ecol
, vol.53
, pp. 15-26
-
-
Trotsenko, Y.A.1
Khmelenina, V.N.2
-
40
-
-
0024296215
-
The presence of five nifH-like sequences in Clostridium pasteurianum: Sequence divergence and transcription properties
-
Wang, S.-Z., Chen, J.-S., and Johson, J. (1988) The presence of five nifH-like sequences in Clostridium pasteurianum: sequence divergence and transcription properties. Nucleic Acids Res 16: 439-453.
-
(1988)
Nucleic Acids Res
, vol.16
, pp. 439-453
-
-
Wang, S.-Z.1
Chen, J.-S.2
Johson, J.3
-
41
-
-
0033083698
-
Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon Cascade mountain range
-
Widmer, F., Shaffer, B.T., Porteous, L.A., and Seidler, R.J. (1999) Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon Cascade mountain range. Appl Environ Microbiol 65: 374-380.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 374-380
-
-
Widmer, F.1
Shaffer, B.T.2
Porteous, L.A.3
Seidler, R.J.4
-
42
-
-
0033916012
-
Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR
-
Zani, S., Mellon, M.T., Collier, J.L., and Zehr, J.P. (2000) Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR. Appl Environ Microbiol 66: 3119-3124.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 3119-3124
-
-
Zani, S.1
Mellon, M.T.2
Collier, J.L.3
Zehr, J.P.4
-
43
-
-
0031664504
-
New nitrogen-fixing microorganisms detected in oligotrophic oceans by amplification of nitrogenase (nifH) genes
-
Zehr, J.P., Mellon, M.T., and Zani, S. (1998) New nitrogen-fixing microorganisms detected in oligotrophic oceans by amplification of nitrogenase (nifH) genes. Appl Environ Microbiol 64: 3444-3450.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3444-3450
-
-
Zehr, J.P.1
Mellon, M.T.2
Zani, S.3
-
44
-
-
0038234799
-
Nitrogenase gene diversity and microbial community structure: A cross-system comparison
-
Zehr, J.P., Jenkins, B.D., Short, S.M., and Steward, G.F. (2003) Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5: 539-554.
-
(2003)
Environ Microbiol
, vol.5
, pp. 539-554
-
-
Zehr, J.P.1
Jenkins, B.D.2
Short, S.M.3
Steward, G.F.4
|