메뉴 건너뛰기




Volumn 204, Issue 2, 2006, Pages 282-309

Conceptual, methodological and computational issues concerning the compartmental modeling of a complex biological system: Postprandial inter-organ metabolism of dietary nitrogen in humans

Author keywords

A priori global identifiability; Healthy humans; Mathematical model; Optimization; Parameter estimation; Protein metabolism

Indexed keywords

BLOOD; HEALTH; MATHEMATICAL MODELS; METABOLISM; NITROGEN; NUMERICAL ANALYSIS; OPTIMIZATION; PARAMETER ESTIMATION;

EID: 33750743747     PISSN: 00255564     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mbs.2006.05.002     Document Type: Article
Times cited : (14)

References (58)
  • 1
    • 0036792116 scopus 로고    scopus 로고
    • Approaches to quantifying protein metabolism in response to nutrient ingestion
    • Fouillet H., Bos C., Gaudichon C., and Tome D. Approaches to quantifying protein metabolism in response to nutrient ingestion. J. Nutr. 132 10 (2002) 3208S
    • (2002) J. Nutr. , vol.132 , Issue.10
    • Fouillet, H.1    Bos, C.2    Gaudichon, C.3    Tome, D.4
  • 6
    • 0028182590 scopus 로고
    • Model-based compartmental analyses in nutrition research
    • Mazier M.J., and Jones P.J. Model-based compartmental analyses in nutrition research. Can. J. Physiol. Pharmacol. 72 4 (1994) 415
    • (1994) Can. J. Physiol. Pharmacol. , vol.72 , Issue.4 , pp. 415
    • Mazier, M.J.1    Jones, P.J.2
  • 7
    • 0031711915 scopus 로고    scopus 로고
    • Dietary amino acids are the preferential source of hepatic protein synthesis in piglets
    • Stoll B., Burrin D.G., Henry J., Yu H., Jahoor F., and Reeds P.J. Dietary amino acids are the preferential source of hepatic protein synthesis in piglets. J. Nutr. 128 9 (1998) 1517
    • (1998) J. Nutr. , vol.128 , Issue.9 , pp. 1517
    • Stoll, B.1    Burrin, D.G.2    Henry, J.3    Yu, H.4    Jahoor, F.5    Reeds, P.J.6
  • 9
    • 0025825079 scopus 로고
    • Isotopic determination of fibronectin synthesis in humans
    • Carraro F., Rosenblatt J., and Wolfe R.R. Isotopic determination of fibronectin synthesis in humans. Metabolism 40 6 (1991) 553
    • (1991) Metabolism , vol.40 , Issue.6 , pp. 553
    • Carraro, F.1    Rosenblatt, J.2    Wolfe, R.R.3
  • 11
    • 0038678108 scopus 로고    scopus 로고
    • Contribution of plasma proteins to splanchnic and total anabolic utilization of dietary nitrogen in humans
    • Fouillet H., Gaudichon C., Bos C., Mariotti F., and Tome D. Contribution of plasma proteins to splanchnic and total anabolic utilization of dietary nitrogen in humans. Am. J. Physiol. Endocrinol. Metab. 285 1 (2003) E88
    • (2003) Am. J. Physiol. Endocrinol. Metab. , vol.285 , Issue.1
    • Fouillet, H.1    Gaudichon, C.2    Bos, C.3    Mariotti, F.4    Tome, D.5
  • 12
    • 0031983246 scopus 로고    scopus 로고
    • Global identifiability of linear compartmental models - a computer algebra algorithm
    • Audoly S., D'Angio L., Saccomani M.P., and Cobelli C. Global identifiability of linear compartmental models - a computer algebra algorithm. IEEE Trans. Biomed. Eng. 45 1 (1998) 36
    • (1998) IEEE Trans. Biomed. Eng. , vol.45 , Issue.1 , pp. 36
    • Audoly, S.1    D'Angio, L.2    Saccomani, M.P.3    Cobelli, C.4
  • 13
    • 0037399670 scopus 로고    scopus 로고
    • Parameter identifiability of nonlinear systems: the role of initial conditions
    • Saccomani M.P., Audoly S., and D'Angiò L. Parameter identifiability of nonlinear systems: the role of initial conditions. Automatica 39 (2003) 619
    • (2003) Automatica , vol.39 , pp. 619
    • Saccomani, M.P.1    Audoly, S.2    D'Angiò, L.3
  • 17
    • 0036889247 scopus 로고    scopus 로고
    • Human protein metabolism: its measurement and regulation
    • Liu Z., and Barrett E.J. Human protein metabolism: its measurement and regulation. Am. J. Physiol. Endocrinol. Metab. 283 6 (2002) 1105
    • (2002) Am. J. Physiol. Endocrinol. Metab. , vol.283 , Issue.6 , pp. 1105
    • Liu, Z.1    Barrett, E.J.2
  • 19
    • 0041417609 scopus 로고    scopus 로고
    • Increasing habitual protein intake accentuates differences in postprandial dietary nitrogen utilization between protein sources in humans
    • Morens C., Bos C., Pueyo M.E., Benamouzig R., Gausseres N., Luengo C., Tome D., and Gaudichon C. Increasing habitual protein intake accentuates differences in postprandial dietary nitrogen utilization between protein sources in humans. J. Nutr. 133 9 (2003) 2733
    • (2003) J. Nutr. , vol.133 , Issue.9 , pp. 2733
    • Morens, C.1    Bos, C.2    Pueyo, M.E.3    Benamouzig, R.4    Gausseres, N.5    Luengo, C.6    Tome, D.7    Gaudichon, C.8
  • 20
    • 0031816575 scopus 로고    scopus 로고
    • Compartmental models: theory and practice using the SAAMII software system
    • Cobelli C., and Foster D.M. Compartmental models: theory and practice using the SAAMII software system. Adv. Exp. Med. Biol. 445 (1998) 79
    • (1998) Adv. Exp. Med. Biol. , vol.445 , pp. 79
    • Cobelli, C.1    Foster, D.M.2
  • 23
    • 0026596750 scopus 로고
    • Structural identifiability of the parameters of a nonlinear batch reactor model
    • Chappel M.J., and Godfrey K.R. Structural identifiability of the parameters of a nonlinear batch reactor model. Math. Biosci. 108 2 (1992) 245
    • (1992) Math. Biosci. , vol.108 , Issue.2 , pp. 245
    • Chappel, M.J.1    Godfrey, K.R.2
  • 24
    • 0028375708 scopus 로고
    • On global identifiability for arbitrary model parameterisations
    • Ljung L., and Glad S.T. On global identifiability for arbitrary model parameterisations. Automatica 30 (1994) 265
    • (1994) Automatica , vol.30 , pp. 265
    • Ljung, L.1    Glad, S.T.2
  • 25
    • 0033663090 scopus 로고    scopus 로고
    • Pharmacokinetics of retinyl palmitate and retinol after intramuscular retinyl palmitate administration in severe malaria
    • Davis T.M.E., Binh T.Q., Thu L.T.A., Rossi R., Danh P.T., Barrett P.H.R., and Beilby J. Pharmacokinetics of retinyl palmitate and retinol after intramuscular retinyl palmitate administration in severe malaria. Clin. Sci. 99 5 (2000) 433
    • (2000) Clin. Sci. , vol.99 , Issue.5 , pp. 433
    • Davis, T.M.E.1    Binh, T.Q.2    Thu, L.T.A.3    Rossi, R.4    Danh, P.T.5    Barrett, P.H.R.6    Beilby, J.7
  • 26
    • 0031356297 scopus 로고    scopus 로고
    • Y. Carson, A. Maria, Simulation optimization: methods and applications, in: Proceedings of the 1997 Winter Simulation Conference, 1997, p. 118.
  • 27
    • 0001735517 scopus 로고
    • On the Mathematical Foundations of Theoretical Statistics
    • Fisher R.A. On the Mathematical Foundations of Theoretical Statistics. Philos. Trans. R. Soc. Lond. A 222 (1922) 309
    • (1922) Philos. Trans. R. Soc. Lond. A , vol.222 , pp. 309
    • Fisher, R.A.1
  • 28
    • 0012691839 scopus 로고
    • The use of statistical models to build mathematical models of chemical reacting systems
    • Reilly P.M., and Blau G.E. The use of statistical models to build mathematical models of chemical reacting systems. Can. J. Chem. Eng. 52 (1974) 289
    • (1974) Can. J. Chem. Eng. , vol.52 , pp. 289
    • Reilly, P.M.1    Blau, G.E.2
  • 29
    • 33750156946 scopus 로고    scopus 로고
    • Development and calibration of a modeling tool for the analysis of clinical data in human nutrition
    • Juillet B., Salomon J., Tome D., and Fouillet H. Development and calibration of a modeling tool for the analysis of clinical data in human nutrition. ESAIM: Proc. 14 (2005) 124
    • (2005) ESAIM: Proc. , vol.14 , pp. 124
    • Juillet, B.1    Salomon, J.2    Tome, D.3    Fouillet, H.4
  • 30
    • 0000238336 scopus 로고
    • A simplex method for function minimization
    • Nelder J.A., and Mead R. A simplex method for function minimization. Comp. J. 7 (1965) 308
    • (1965) Comp. J. , vol.7 , pp. 308
    • Nelder, J.A.1    Mead, R.2
  • 31
    • 0032251894 scopus 로고    scopus 로고
    • Convergence properties of the Nelder-Mead simplex method in low dimensions
    • Lagarias J.C., Reeds J.A., Wright M.H., and Wright P.E. Convergence properties of the Nelder-Mead simplex method in low dimensions. SIAM J. Optim. 9 1 (1998) 112
    • (1998) SIAM J. Optim. , vol.9 , Issue.1 , pp. 112
    • Lagarias, J.C.1    Reeds, J.A.2    Wright, M.H.3    Wright, P.E.4
  • 32
    • 33750714651 scopus 로고    scopus 로고
    • R.M. Lewis, V. Torczon, M.W. Trosset, Direct search methods: then and now, NASA-CR-2000-210125, ICASE Report no. 2000-26.
  • 33
    • 0032266429 scopus 로고    scopus 로고
    • D.G. Humphrey, J.R. Wilson, A revised simplex search procedure for stochastic simulation response surface optimization, in: Proceedings of the 1998 Winter Simulation Conference, 1998, p. 751.
  • 34
    • 0033672222 scopus 로고    scopus 로고
    • Development of a compartmental model of human zinc metabolism: identifiability and multiple studies analyses
    • Miller L.V., Krebs N.F., and Hambidge K.M. Development of a compartmental model of human zinc metabolism: identifiability and multiple studies analyses. Am. J. Physiol. Regul. Integr. Comp. Physiol. 279 (2000) 1671
    • (2000) Am. J. Physiol. Regul. Integr. Comp. Physiol. , vol.279 , pp. 1671
    • Miller, L.V.1    Krebs, N.F.2    Hambidge, K.M.3
  • 35
    • 0021431509 scopus 로고
    • Multiexponential, multicompartmental, and non-compartmental modeling II. Data analysis and statistical considerations
    • Landaw E.M., and DiStefano J.J. Multiexponential, multicompartmental, and non-compartmental modeling II. Data analysis and statistical considerations. Am. J. Physiol. 246 5 (1984) R665
    • (1984) Am. J. Physiol. , vol.246 , Issue.5
    • Landaw, E.M.1    DiStefano, J.J.2
  • 36
    • 77957184068 scopus 로고
    • An optimization strategy for a biokinetic model of inhaled radionuclides
    • Shyr L.J., Griffith W.C., and Boecker B.B. An optimization strategy for a biokinetic model of inhaled radionuclides. Fundam. Appl. Toxicol. 16 3 (1991) 423
    • (1991) Fundam. Appl. Toxicol. , vol.16 , Issue.3 , pp. 423
    • Shyr, L.J.1    Griffith, W.C.2    Boecker, B.B.3
  • 39
    • 0031880953 scopus 로고    scopus 로고
    • Using what is accessible to measure that which is not: necessity of model of system
    • Cobelli C., and Caumo A. Using what is accessible to measure that which is not: necessity of model of system. Metabolism 47 8 (1998) 1009
    • (1998) Metabolism , vol.47 , Issue.8 , pp. 1009
    • Cobelli, C.1    Caumo, A.2
  • 40
    • 0031849604 scopus 로고    scopus 로고
    • Human zinc metabolism: advances in the modeling of stable isotope data
    • Miller L.V., Krebs N.F., and Hambidge K.M. Human zinc metabolism: advances in the modeling of stable isotope data. Adv. Exp. Med. Biol. 445 (1998) 253
    • (1998) Adv. Exp. Med. Biol. , vol.445 , pp. 253
    • Miller, L.V.1    Krebs, N.F.2    Hambidge, K.M.3
  • 42
    • 0032425218 scopus 로고    scopus 로고
    • Absorption of nutrients is only slightly reduced by supplementing enteral formulas with viscous fiber in miniature pigs
    • Ehrlein H., and Stockmann A. Absorption of nutrients is only slightly reduced by supplementing enteral formulas with viscous fiber in miniature pigs. J. Nutr. 128 12 (1998) 2446
    • (1998) J. Nutr. , vol.128 , Issue.12 , pp. 2446
    • Ehrlein, H.1    Stockmann, A.2
  • 44
    • 0031458644 scopus 로고    scopus 로고
    • Intestinal transit and absorption of soy protein in dogs depend on load and degree of protein hydrolysis
    • Zhao X.T., McCamish M.A., Miller R.H., Wang L., and Lin H.C. Intestinal transit and absorption of soy protein in dogs depend on load and degree of protein hydrolysis. J. Nutr. 127 12 (1997) 2350
    • (1997) J. Nutr. , vol.127 , Issue.12 , pp. 2350
    • Zhao, X.T.1    McCamish, M.A.2    Miller, R.H.3    Wang, L.4    Lin, H.C.5
  • 46
    • 0032953871 scopus 로고    scopus 로고
    • Dietary and systemic phenylalanine utilization for mucosal and hepatic constitutive protein synthesis in pigs
    • Stoll B., Burrin D.G., Henry J., Jahoor F., and Reeds P.J. Dietary and systemic phenylalanine utilization for mucosal and hepatic constitutive protein synthesis in pigs. Am. J. Physiol. 276 1 (1999) G49
    • (1999) Am. J. Physiol. , vol.276 , Issue.1
    • Stoll, B.1    Burrin, D.G.2    Henry, J.3    Jahoor, F.4    Reeds, P.J.5
  • 48
    • 0032424864 scopus 로고    scopus 로고
    • Infusion of soy and casein protein meals affects interorgan amino acid metabolism and urea kinetics differently in pigs
    • Deutz N.E., Bruins M.J., and Soeters P.B. Infusion of soy and casein protein meals affects interorgan amino acid metabolism and urea kinetics differently in pigs. J. Nutr. 128 12 (1998) 2435
    • (1998) J. Nutr. , vol.128 , Issue.12 , pp. 2435
    • Deutz, N.E.1    Bruins, M.J.2    Soeters, P.B.3
  • 49
    • 0033858993 scopus 로고    scopus 로고
    • A high-protein meal exceeds anabolic and catabolic capacities in rats adapted to a normal protein diet
    • Morens C., Gaudichon C., Metges C.C., Fromentin G., Baglieri A., Even P.C., Huneau J.F., and Tome D. A high-protein meal exceeds anabolic and catabolic capacities in rats adapted to a normal protein diet. J. Nutr. 130 9 (2000) 2312
    • (2000) J. Nutr. , vol.130 , Issue.9 , pp. 2312
    • Morens, C.1    Gaudichon, C.2    Metges, C.C.3    Fromentin, G.4    Baglieri, A.5    Even, P.C.6    Huneau, J.F.7    Tome, D.8
  • 51
    • 0024360863 scopus 로고
    • Amino acid metabolism in muscle and in the whole body of man before and after ingestion of a single mixed meal
    • Elia M., Folmer P., Schlatmann A., Goren A., and Austin S. Amino acid metabolism in muscle and in the whole body of man before and after ingestion of a single mixed meal. Am. J. Clin. Nutr. 49 6 (1989) 1203
    • (1989) Am. J. Clin. Nutr. , vol.49 , Issue.6 , pp. 1203
    • Elia, M.1    Folmer, P.2    Schlatmann, A.3    Goren, A.4    Austin, S.5
  • 53
    • 0028833275 scopus 로고
    • Acute stimulation of albumin synthesis rate with oral meal feeding in healthy subjects measured with [ring-2H5]phenylalanine
    • Hunter K.A., Ballmer P.E., Anderson S.E., Broom J., Garlick P.J., and McNurlan M.A. Acute stimulation of albumin synthesis rate with oral meal feeding in healthy subjects measured with [ring-2H5]phenylalanine. Clin. Sci. (Lond.) 88 2 (1995) 235
    • (1995) Clin. Sci. (Lond.) , vol.88 , Issue.2 , pp. 235
    • Hunter, K.A.1    Ballmer, P.E.2    Anderson, S.E.3    Broom, J.4    Garlick, P.J.5    McNurlan, M.A.6
  • 56
    • 0029330961 scopus 로고
    • Salvage of urea-nitrogen and protein requirements
    • Jackson A.A. Salvage of urea-nitrogen and protein requirements. Proc. Nutr. Soc. 54 2 (1995) 535
    • (1995) Proc. Nutr. Soc. , vol.54 , Issue.2 , pp. 535
    • Jackson, A.A.1
  • 57
    • 0027200188 scopus 로고
    • Physiological increments in plasma insulin concentrations have selective and different effects on synthesis of hepatic proteins in normal humans
    • De Feo P., Volpi E., Lucidi P., Cruciani G., Reboldi G., Siepi D., Mannarino E., Santeusanio F., Brunetti P., and Bolli G.B. Physiological increments in plasma insulin concentrations have selective and different effects on synthesis of hepatic proteins in normal humans. Diabetes 42 (1993) 995
    • (1993) Diabetes , vol.42 , pp. 995
    • De Feo, P.1    Volpi, E.2    Lucidi, P.3    Cruciani, G.4    Reboldi, G.5    Siepi, D.6    Mannarino, E.7    Santeusanio, F.8    Brunetti, P.9    Bolli, G.B.10
  • 58
    • 0032953652 scopus 로고    scopus 로고
    • Calcium and oxalic acid kinetics differ in rats
    • Hanes D.A., Weaver C.M., and Wastney M.E. Calcium and oxalic acid kinetics differ in rats. J. Nutr. 129 (1999) 165
    • (1999) J. Nutr. , vol.129 , pp. 165
    • Hanes, D.A.1    Weaver, C.M.2    Wastney, M.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.