-
1
-
-
0037160068
-
Characterization of simian virus 40 T-antigen double hexamers bound to a replication fork. The active form of the helicase
-
Alexandrov, A. I., M. R. Botchan, and N. R. Cozzarelli. 2002. Characterization of simian virus 40 T-antigen double hexamers bound to a replication fork. The active form of the helicase. J. Biol. Chem. 277:44886-44897.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 44886-44897
-
-
Alexandrov, A.I.1
Botchan, M.R.2
Cozzarelli, N.R.3
-
2
-
-
0034962757
-
Purification of a bacterially expressed herpes simplex virus type 1 origin binding protein for use in post-translational processing studies
-
Bronstein, J. C., and P. C. Weber. 2001. Purification of a bacterially expressed herpes simplex virus type 1 origin binding protein for use in post-translational processing studies. Protein Expr. Purif. 22:276-285.
-
(2001)
Protein Expr. Purif.
, vol.22
, pp. 276-285
-
-
Bronstein, J.C.1
Weber, P.C.2
-
3
-
-
0041561087
-
Dual interaction of plant PCNA with geminivirus replication accessory protein (Ren) and viral replication protein (Rep)
-
Castillo, A. G., D. Collinet, S. Deret, A. Kashoggi, and E. R. Bejarano. 2003. Dual interaction of plant PCNA with geminivirus replication accessory protein (Ren) and viral replication protein (Rep). Virology 312:381-394.
-
(2003)
Virology
, vol.312
, pp. 381-394
-
-
Castillo, A.G.1
Collinet, D.2
Deret, S.3
Kashoggi, A.4
Bejarano, E.R.5
-
4
-
-
0028842206
-
Strain-specific determinants of beet curly top geminivirus DNA replication
-
Choi, I. R., and D. C. Stenger, 1995. Strain-specific determinants of beet curly top geminivirus DNA replication. Virology 206:904-912.
-
(1995)
Virology
, vol.206
, pp. 904-912
-
-
Choi, I.R.1
Stenger, D.C.2
-
5
-
-
0036284381
-
Parvovirus initiator protein NS1 and RPA coordinate replication fork progression in a reconstituted DNA replication system
-
Christensen, J., and P. Tattersall. 2002. Parvovirus initiator protein NS1 and RPA coordinate replication fork progression in a reconstituted DNA replication system. J. Virol. 76:6518-6531.
-
(2002)
J. Virol.
, vol.76
, pp. 6518-6531
-
-
Christensen, J.1
Tattersall, P.2
-
6
-
-
0141817949
-
A biochemical characterization of the adeno-associated virus Rep40 helicase
-
Collaco, R. F., V. Kalman-Maltese, A. D. Smith, J. D. Dignam, and J. P. Trempe. 2003. A biochemical characterization of the adeno-associated virus Rep40 helicase. J. Biol. Chem. 278:34011-34017.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 34011-34017
-
-
Collaco, R.F.1
Kalman-Maltese, V.2
Smith, A.D.3
Dignam, J.D.4
Trempe, J.P.5
-
7
-
-
0042200759
-
Replicative helicase loaders: Ring breakers and ring makers
-
Davey, M. J., and M. O'Donnell. 2003. Replicative helicase loaders: ring breakers and ring makers. Curr. Biol. 13:R594-R596.
-
(2003)
Curr. Biol.
, vol.13
-
-
Davey, M.J.1
O'Donnell, M.2
-
8
-
-
0029070826
-
Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication
-
Desbiez, C., C. David, A. Mettouchi, J. Laufs, and B. Gronenborn. 1995. Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication. Proc. Natl. Acad. Sci. USA 92:5640-5644.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 5640-5644
-
-
Desbiez, C.1
David, C.2
Mettouchi, A.3
Laufs, J.4
Gronenborn, B.5
-
10
-
-
1842311742
-
Cellular factors required for multiple stages of SV40 DNA replication in vitro
-
Fairman, M. P., and B. Stillman. 1988. Cellular factors required for multiple stages of SV40 DNA replication in vitro. EMBO J. 7:1211-1218.
-
(1988)
EMBO J.
, vol.7
, pp. 1211-1218
-
-
Fairman, M.P.1
Stillman, B.2
-
11
-
-
4444274603
-
Insights into the oligomeric states, conformational changes, and helicase activities of SV40 large tumor antigen
-
Gai, D., D. Li, C. V. Finkielstein, R. D. Ott, P. Taneja, E. Fanning, and X. S. Chen. 2004. Insights into the oligomeric states, conformational changes, and helicase activities of SV40 large tumor antigen. J. Biol. Chem. 279:38952-38959.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 38952-38959
-
-
Gai, D.1
Li, D.2
Finkielstein, C.V.3
Ott, R.D.4
Taneja, P.5
Fanning, E.6
Chen, X.S.7
-
12
-
-
4644358568
-
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: The effect of the 3′ arm and the stability of the dsDNA on the unwinding activity of the Escherichia coli DnaB helicase
-
Galletto, R., M. J. Jezewska, and W. Bujalowski. 2004. Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: the effect of the 3′ arm and the stability of the dsDNA on the unwinding activity of the Escherichia coli DnaB helicase. J. Mol. Biol. 343:101-114.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 101-114
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
-
13
-
-
0037271207
-
Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: Combined structural, functional and phylogenetic perspectives
-
Giraldo, R. 2003. Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives. FEMS Microbiol. Rev. 26:533-554.
-
(2003)
FEMS Microbiol. Rev.
, vol.26
, pp. 533-554
-
-
Giraldo, R.1
-
14
-
-
28844449554
-
Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum
-
Gomez-Llorente, Y., R. J. Fletcher, X. S. Chen, J. M. Carazo, and C. San Martin. 2005. Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum. J. Biol. Chem. 280:40909-40915.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 40909-40915
-
-
Gomez-Llorente, Y.1
Fletcher, R.J.2
Chen, X.S.3
Carazo, J.M.4
San Martin, C.5
-
15
-
-
0027182114
-
Helicases: Amino acid sequence comparisons and structure-function relationships
-
Gorbalenya, A. E., and E. V. Koonin. 1993. Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3:419-429.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
16
-
-
0025261685
-
A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses
-
Gorbalenya, A. E., E. V. Koonin, and Y. I. Wolf. 1990. A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Lett. 262:145-148.
-
(1990)
FEBS Lett.
, vol.262
, pp. 145-148
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
Wolf, Y.I.3
-
17
-
-
1642310582
-
Reprogramming plant gene expression: A prerequisite to geminivirus DNA replication
-
Hanley-Bowdoin, L., S. B. Settlage, and D. Robertson. 2004. Reprogramming plant gene expression: a prerequisite to geminivirus DNA replication. Mol. Plant Pathol. 5:149-156.
-
(2004)
Mol. Plant Pathol.
, vol.5
, pp. 149-156
-
-
Hanley-Bowdoin, L.1
Settlage, S.B.2
Robertson, D.3
-
18
-
-
13844254123
-
Binding and unwinding: SF3 viral helicases
-
Hickman, A. B., and F. Dyda. 2005. Binding and unwinding: SF3 viral helicases. Curr. Opin. Struct. Biol. 15:77-85.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 77-85
-
-
Hickman, A.B.1
Dyda, F.2
-
20
-
-
0032215491
-
Prediction of functional regions of the maize streak virus replication-associated proteins by protein-protein interaction analysis
-
Horvath, G. V., A. Pettko-Szandtner, K. Nikovics, M. Bilgin, M. Boulton, J. W. Davies, C. Gutierrez, and D. Dudits. 1998. Prediction of functional regions of the maize streak virus replication-associated proteins by protein-protein interaction analysis. Plant Mol. Biol. 38:699-712.
-
(1998)
Plant Mol. Biol.
, vol.38
, pp. 699-712
-
-
Horvath, G.V.1
Pettko-Szandtner, A.2
Nikovics, K.3
Bilgin, M.4
Boulton, M.5
Davies, J.W.6
Gutierrez, C.7
Dudits, D.8
-
21
-
-
1642325936
-
Evolutionary history and higher order classification of AAA+ ATPases
-
Iyer, L. M., D. D. Leipe, E. V. Koonin, and L. Aravind. 2004. Evolutionary history and higher order classification of AAA+ ATPases. J. Struct. Biol. 146:11-31.
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 11-31
-
-
Iyer, L.M.1
Leipe, D.D.2
Koonin, E.V.3
Aravind, L.4
-
22
-
-
0041630781
-
Crystal structure of the SF3 helicase from adeno-associated virus type 2
-
James, J. A., C. R. Escalante, M. Yoon-Robarts, T. A. Edwards, R. M. Linden, and A. K. Aggarwal. 2003. Crystal structure of the SF3 helicase from adeno-associated virus type 2. Structure 11:1025-1035.
-
(2003)
Structure
, vol.11
, pp. 1025-1035
-
-
James, J.A.1
Escalante, C.R.2
Yoon-Robarts, M.3
Edwards, T.A.4
Linden, R.M.5
Aggarwal, A.K.6
-
23
-
-
0018600707
-
An improved assay for nanomole amounts of inorganic phosphate
-
Lanzetta, P. A., L. J. Alvarez, P. S. Reinach, and O. A. Candia. 1979. An improved assay for nanomole amounts of inorganic phosphate. Anal. Biochem. 100:95-97.
-
(1979)
Anal. Biochem.
, vol.100
, pp. 95-97
-
-
Lanzetta, P.A.1
Alvarez, L.J.2
Reinach, P.S.3
Candia, O.A.4
-
24
-
-
0029042501
-
In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus
-
Laufs, J., W. Traut, F. Heyraud, V. Matzeit, S. G. Rogers, J. Schell, and B. Gronenborn. 1995. In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. USA 92:3879-3883.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3879-3883
-
-
Laufs, J.1
Traut, W.2
Heyraud, F.3
Matzeit, V.4
Rogers, S.G.5
Schell, J.6
Gronenborn, B.7
-
25
-
-
0035793113
-
Processive DNA helicase activity of the minichromosome maintenance proteins 4, 6, and 7 complex requires forked DNA structures
-
Lee, J. K., and J. Hurwitz. 2001. Processive DNA helicase activity of the minichromosome maintenance proteins 4, 6, and 7 complex requires forked DNA structures. Proc. Natl. Acad. Sci. USA 98:54-59.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 54-59
-
-
Lee, J.K.1
Hurwitz, J.2
-
26
-
-
0038700763
-
Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen
-
Li, D., R. Zhao, W. Lilyestrom, D. Gai, R. Zhang, J. A. DeCaprio, E. Fanning, A. Jochimiak, G. Szakonyi, and X. S. Chen. 2003. Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. Nature 423:512-518.
-
(2003)
Nature
, vol.423
, pp. 512-518
-
-
Li, D.1
Zhao, R.2
Lilyestrom, W.3
Gai, D.4
Zhang, R.5
Decaprio, J.A.6
Fanning, E.7
Jochimiak, A.8
Szakonyi, G.9
Chen, X.S.10
-
27
-
-
0029893874
-
Mechanisms of helicase-catalyzed DNA unwinding
-
Lohman, T. M., and K. P. Bjornson. 1996. Mechanisms of helicase-catalyzed DNA unwinding. Annu. Rev. Biochem. 65:169-214.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 169-214
-
-
Lohman, T.M.1
Bjornson, K.P.2
-
28
-
-
0036432920
-
Interaction of geminivirus Rep protein with replication factor C and its potential role during geminivirus DNA replication
-
Luque, A., A. P. Sanz-Burgos, E. Ramirez-Parra, M. M. Castellano, and C. Gutierrez. 2002. Interaction of geminivirus Rep protein with replication factor C and its potential role during geminivirus DNA replication. Virology 302:83-94.
-
(2002)
Virology
, vol.302
, pp. 83-94
-
-
Luque, A.1
Sanz-Burgos, A.P.2
Ramirez-Parra, E.3
Castellano, M.M.4
Gutierrez, C.5
-
29
-
-
73049130725
-
A method for determining the sedimentation behavior of enzymes: Application to protein mixture
-
Martin, R. G., and B. N. Ames. 1961. A method for determining the sedimentation behavior of enzymes: application to protein mixture. J. Biol. Chem. 236:1372-1379.
-
(1961)
J. Biol. Chem.
, vol.236
, pp. 1372-1379
-
-
Martin, R.G.1
Ames, B.N.2
-
30
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin, L. J., K. Bryson, and D. T. Jones. 2000. The PSIPRED protein structure prediction server. Bioinformatics 16:404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
31
-
-
0344198460
-
Perpetuating the double helix: Molecular machines at eukaryotic DNA replication origins
-
Mendez, J., and B. Stillman. 2003. Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins. Bioessays 25:1158-1167.
-
(2003)
Bioessays
, vol.25
, pp. 1158-1167
-
-
Mendez, J.1
Stillman, B.2
-
32
-
-
0034691517
-
Relationship of oligomerization to DNA binding of wheat dwarf virus RepA and Rep proteins
-
Missich, R., E. Ramirez-Parra, and C. Gutierrez. 2000. Relationship of oligomerization to DNA binding of wheat dwarf virus RepA and Rep proteins. Virology 273:178-188.
-
(2000)
Virology
, vol.273
, pp. 178-188
-
-
Missich, R.1
Ramirez-Parra, E.2
Gutierrez, C.3
-
33
-
-
1642377971
-
Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases
-
Ogura, T., S. W. Whiteheart, and A. J. Wilkinson. 2004. Conserved arginine residues implicated in ATP hydrolysis, nucleotide-sensing, and inter-subunit interactions in AAA and AAA+ ATPases. J. Struct. Biol. 146:106-112.
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 106-112
-
-
Ogura, T.1
Whiteheart, S.W.2
Wilkinson, A.J.3
-
34
-
-
0034010122
-
The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties
-
Orozco, B. M., L. J. Kong, L. A. Batts, S. Elledge, and L. Hanley-Bowdoin. 2000. The multifunctional character of a geminivirus replication protein is reflected by its complex oligomerization properties. J. Biol. Chem. 275:6114-6122.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 6114-6122
-
-
Orozco, B.M.1
Kong, L.J.2
Batts, L.A.3
Elledge, S.4
Hanley-Bowdoin, L.5
-
35
-
-
0030894969
-
Functional domains of a geminivirus replication protein
-
Orozco, B. M., A. B. Miller, S. B. Settlage, and L. Hanley-Bowdoin. 1997. Functional domains of a geminivirus replication protein. J. Biol. Chem. 272:9840-9846.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 9840-9846
-
-
Orozco, B.M.1
Miller, A.B.2
Settlage, S.B.3
Hanley-Bowdoin, L.4
-
36
-
-
0033786801
-
Structure and function of hexameric helicases
-
Patel, S. S., and K. M. Picha. 2000. Structure and function of hexameric helicases. Annu. Rev. Biochem. 69:651-697.
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 651-697
-
-
Patel, S.S.1
Picha, K.M.2
-
37
-
-
0028214450
-
Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresis
-
Schagger, H., W. A. Cramer, and G. von Jagow. 1994. Analysis of molecular masses and oligomeric states of protein complexes by blue native electrophoresis and isolation of membrane protein complexes by two-dimensional native electrophoresis. Anal. Biochem. 217:220-230.
-
(1994)
Anal. Biochem.
, vol.217
, pp. 220-230
-
-
Schagger, H.1
Cramer, W.A.2
Von Jagow, G.3
-
38
-
-
0036315133
-
Oligomeric and conformational properties of a proteolytically mature, disulfide-stabilized human immunodeficiency virus type 1 gp140 envelope glycoprotein
-
Schulke, N., M. S. Vesanen, R. W. Sanders, P. Zhu, M. Lu, D. J. Anselma, A. R. Villa, P. W. H. I. Parren, J. M. Binley, K. H. Roux, P. J. Maddon, J. P. Moore, and W. C. Olson. 2002. Oligomeric and conformational properties of a proteolytically mature, disulfide-stabilized human immunodeficiency virus type 1 gp140 envelope glycoprotein. J. Virol. 76:7760-7776.
-
(2002)
J. Virol.
, vol.76
, pp. 7760-7776
-
-
Schulke, N.1
Vesanen, M.S.2
Sanders, R.W.3
Zhu, P.4
Lu, M.5
Anselma, D.J.6
Villa, A.R.7
Parren, P.W.H.I.8
Binley, J.M.9
Roux, K.H.10
Maddon, P.J.11
Moore, J.P.12
Olson, W.C.13
-
39
-
-
4444347924
-
Two heads are better than one: Regulation of DNA replication by hexameric helicases
-
Sclafani, R. A., R. J. Fletcher, and X. S. Chen. 2004. Two heads are better than one: regulation of DNA replication by hexameric helicases. Genes Dev. 18:2039-2045.
-
(2004)
Genes Dev.
, vol.18
, pp. 2039-2045
-
-
Sclafani, R.A.1
Fletcher, R.J.2
Chen, X.S.3
-
40
-
-
23844481082
-
The roles of the residues on the channel beta-hairpin and loop structures of simian virus 40 hexameric helicase
-
Shen, J., D. Gai, A. Patrick, W. B. Greenleaf, and X. S. Chen. 2005. The roles of the residues on the channel beta-hairpin and loop structures of simian virus 40 hexameric helicase. Proc. Natl. Acad. Sci. USA 102:11248-11253.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 11248-11253
-
-
Shen, J.1
Gai, D.2
Patrick, A.3
Greenleaf, W.B.4
Chen, X.S.5
-
41
-
-
0014007813
-
Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases
-
Siegel, L. M., and K. J. Monty. 1966. Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases. Biochim. Biophys. Acta 112:346-362.
-
(1966)
Biochim. Biophys. Acta
, vol.112
, pp. 346-362
-
-
Siegel, L.M.1
Monty, K.J.2
-
42
-
-
0141891451
-
Initiation of DNA replication: Lessons from viral initiator proteins
-
Stenlund, A. 2003. Initiation of DNA replication: lessons from viral initiator proteins. Nat. Rev. Mol. Cell. Biol. 4:777-785.
-
(2003)
Nat. Rev. Mol. Cell. Biol.
, vol.4
, pp. 777-785
-
-
Stenlund, A.1
-
43
-
-
9644258644
-
Residues within the B′ motif are critical for DNA binding by the superfamily 3 helicase Rep40 of adenoassociated virus type 2
-
Yoon-Robarts, M., A. G. Blouin, S. Bleker, J. A. Kleinschmidt, A. K. Aggarwal, C. R. Escalante, and R. M. Linden. 2004. Residues within the B′ motif are critical for DNA binding by the superfamily 3 helicase Rep40 of adenoassociated virus type 2. J. Biol. Chem. 279:50472-50481.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 50472-50481
-
-
Yoon-Robarts, M.1
Blouin, A.G.2
Bleker, S.3
Kleinschmidt, J.A.4
Aggarwal, A.K.5
Escalante, C.R.6
Linden, R.M.7
|