-
1
-
-
18244389201
-
Standardizing global gene expression analysis between laboratories and across platforms
-
Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'Malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H: Standardizing global gene expression analysis between laboratories and across platforms. Nat Methods 2005, 2(5):351-356.
-
(2005)
Nat Methods
, vol.2
, Issue.5
, pp. 351-356
-
-
Bammler, T.1
Beyer, R.P.2
Bhattacharya, S.3
Boorman, G.A.4
Boyles, A.5
Bradford, B.U.6
Bumgarner, R.E.7
Bushel, P.R.8
Chaturvedi, K.9
Choi, D.10
Cunningham, M.L.11
Deng, S.12
Dressman, H.K.13
Fannin, R.D.14
Farin, F.M.15
Freedman, J.H.16
Fry, R.C.17
Harper, A.18
Humble, M.C.19
Hurban, P.20
Kavanagh, T.J.21
Kaufmann, W.K.22
Kerr, K.F.23
Jing, L.24
Lapidus, J.A.25
Lasarev, M.R.26
Li, J.27
Li, Y.J.28
Lobenhofer, E.K.29
Lu, X.30
Malek, R.L.31
Milton, S.32
Nagalla, S.R.33
O'Malley, J.P.34
Palmer, V.S.35
Pattee, P.36
Paules, R.S.37
Perou, C.M.38
Phillips, K.39
Qin, L.X.40
Qiu, Y.41
Quigley, S.D.42
Rodland, M.43
Rusyn, I.44
Samson, L.D.45
Schwartz, D.A.46
Shi, Y.47
Shin, J.L.48
Sieber, S.O.49
Slifer, S.50
Speer, M.C.51
Spencer, P.S.52
Sproles, D.I.53
Swenberg, J.A.54
Suk, W.A.55
Sullivan, R.C.56
Tian, R.57
Tennant, R.W.58
Todd, S.A.59
Tucker, C.J.60
Van Houten, B.61
Weis, B.K.62
Xuan, S.63
Zarbl, H.64
more..
-
2
-
-
0036164793
-
Microarray data quality analysis: Lessons from the AFGC project
-
Arabidopsis Functional Genomics Consortium
-
Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S: Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium. Plant Mol Biol 2002, 48(1-2):119-131.
-
(2002)
Plant Mol Biol
, vol.48
, Issue.1-2
, pp. 119-131
-
-
Finkelstein, D.1
Ewing, R.2
Gollub, J.3
Sterky, F.4
Cherry, J.M.5
Somerville, S.6
-
3
-
-
18244384210
-
Multiple-laboratory comparison of microarray platforms
-
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martinez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W: Multiple-laboratory comparison of microarray platforms. Nat Methods 2005, 2(5):345-350.
-
(2005)
Nat Methods
, vol.2
, Issue.5
, pp. 345-350
-
-
Irizarry, R.A.1
Warren, D.2
Spencer, F.3
Kim, I.F.4
Biswal, S.5
Frank, B.C.6
Gabrielson, E.7
Garcia, J.G.8
Geoghegan, J.9
Germino, G.10
Griffin, C.11
Hilmer, S.C.12
Hoffman, E.13
Jedlicka, A.E.14
Kawasaki, E.15
Martinez-Murillo, F.16
Morsberger, L.17
Lee, H.18
Petersen, D.19
Quackenbush, J.20
Scott, A.21
Wilson, M.22
Yang, Y.23
Ye, S.Q.24
Yu, W.25
more..
-
4
-
-
17244381413
-
There is no silver bullet - A guide to low-level data transforms and normalisation methods for microarray data
-
Kreil DP, Russell RR: There is no silver bullet - a guide to low-level data transforms and normalisation methods for microarray data. Brief Bioinform 2005, 6(1):86-97.
-
(2005)
Brief Bioinform
, vol.6
, Issue.1
, pp. 86-97
-
-
Kreil, D.P.1
Russell, R.R.2
-
5
-
-
84874660494
-
-
The R project for Statistical Computing
-
The R project for Statistical Computing [http://www.rproject.org/].
-
-
-
-
6
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautler L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5(10):R80.
-
(2004)
Genome Biol
, vol.5
, Issue.10
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
Ellis, B.7
Gautler, L.8
Ge, Y.9
Gentry, J.10
Hornik, K.11
Hothorn, T.12
Huber, W.13
Iacus, S.14
Irizarry, R.15
Leisch, F.16
Li, C.17
Maechler, M.18
Rossini, A.J.19
Sawitzki, G.20
Smith, C.21
Smyth, G.22
Tierney, L.23
Yang, J.Y.24
Zhang, J.25
more..
-
7
-
-
13244287795
-
Mistaken identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics
-
Zeeberg BR, Riss J, Kane DW, Bussey KJ, Uchio E, Linehan WM, Barrett JC, Weinstein JN, Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics. BMC Bioinformatics 2004, 5:80.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 80
-
-
Zeeberg, B.R.1
Riss, J.2
Kane, D.W.3
Bussey, K.J.4
Uchio, E.5
Linehan, W.M.6
Barrett, J.C.7
Weinstein, J.N.8
-
8
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth GK, Speed T: Normalization of cDNA microarray data. Methods 2003, 31(4):265-273.
-
(2003)
Methods
, vol.31
, Issue.4
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
9
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30(4):e15.
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
10
-
-
3242890299
-
Array-Pipe: A flexible processing pipeline for microarray data
-
(Web Server issue)
-
Hokamp K, Roche FM, Acab M, Rousseau ME, Kuo B, Goode D, Aeschliman D, Bryan J, Babiuk LA, Hancock RE, Brinkman FS: Array-Pipe: a flexible processing pipeline for microarray data. Nucleic Acids Res 2004, 32(Web Server issue):W457-9.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Hokamp, K.1
Roche, F.M.2
Acab, M.3
Rousseau, M.E.4
Kuo, B.5
Goode, D.6
Aeschliman, D.7
Bryan, J.8
Babiuk, L.A.9
Hancock, R.E.10
Brinkman, F.S.11
-
11
-
-
33747839466
-
CARMAweb: Comprehensive R- and bioconductor-based web service for microarray data analysis
-
(Web Server issue)
-
Rainer J, Sanchez-Cabo F, Stocker G, Sturn A, Trajanoski Z: CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. Nucleic Acids Res 2006, 34(Web Server issue):W498-503.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Rainer, J.1
Sanchez-Cabo, F.2
Stocker, G.3
Sturn, A.4
Trajanoski, Z.5
-
12
-
-
12344334489
-
DNMAD: Web-based diagnosis and normalization for microarray data
-
Vaquerizas JM, Dopazo J, Diaz-Uriarte R: DNMAD: web-based diagnosis and normalization for microarray data. Bioinformatics 2004, 20(18):3656-3658.
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3656-3658
-
-
Vaquerizas, J.M.1
Dopazo, J.2
Diaz-Uriarte, R.3
-
14
-
-
0036855423
-
SNOMAD (Standardization and NOrmalization of MicroArray Data): Web-accessible gene expression data analysis
-
Colantuoni C, Henry G, Zeger S, Pevsner J: SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis. Bioinformatics 2002, 18(11):1540-1541.
-
(2002)
Bioinformatics
, vol.18
, Issue.11
, pp. 1540-1541
-
-
Colantuoni, C.1
Henry, G.2
Zeger, S.3
Pevsner, J.4
-
15
-
-
30044444274
-
WebArray: An online platform for microarray data analysis
-
Xia X, McClelland M, Wang Y: WebArray: an online platform for microarray data analysis. BMC Bioinformatics 2005, 6:306.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 306
-
-
Xia, X.1
McClelland, M.2
Wang, Y.3
-
16
-
-
12344330424
-
ImmaGUI: A graphical user interface for linear modeling of microarray data
-
Wettenhall JM, Smyth GK: IimmaGUI: a graphical user interface for linear modeling of microarray data. Bioinformatics 2004, 20(18):3705-3706.
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3705-3706
-
-
Wettenhall, J.M.1
Smyth, G.K.2
-
17
-
-
0742279021
-
Standards for microarray data
-
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJJ, Stewart JE, Taylor R, Brazma A, Quackenbush J: Standards for microarray data. Science 2002, 298(5593):539.
-
(2002)
Science
, vol.298
, Issue.5593
, pp. 539
-
-
Ball, C.A.1
Sherlock, G.2
Parkinson, H.3
Rocca-Sera, P.4
Brooksbank, C.5
Causton, H.C.6
Cavalieri, D.7
Gaasterland, T.8
Hingamp, P.9
Holstege, F.10
Ringwald, M.11
Spellman, P.12
Stoeckert, C.J.J.13
Stewart, J.E.14
Taylor, R.15
Brazma, A.16
Quackenbush, J.17
-
18
-
-
8144231112
-
The effect of normalization on microarray data analysis
-
Ding Y, Wilkins D: The effect of normalization on microarray data analysis. DNA Cell Biol 2004, 23(10):635-642.
-
(2004)
DNA Cell Biol
, vol.23
, Issue.10
, pp. 635-642
-
-
Ding, Y.1
Wilkins, D.2
-
19
-
-
84874649846
-
-
GNU Genera Public License
-
GNU GENERAL PUBLIC LICENSE [http://www.gnu.org/licenses/gpl.txt]
-
-
-
-
20
-
-
0036207991
-
New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRRI transcription factor regulation system
-
Le Crom S, Devaux F, Mart P, Zhang X, Moye-Rowley WS, Jacq C: New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRRI transcription factor regulation system. Mol Cell Biol 2002, 22(8):2642-2649.
-
(2002)
Mol Cell Biol
, vol.22
, Issue.8
, pp. 2642-2649
-
-
Le Crom, S.1
Devaux, F.2
Mart, P.3
Zhang, X.4
Moye-Rowley, W.S.5
Jacq, C.6
|