메뉴 건너뛰기




Volumn 62, Issue 4-5, 2006, Pages 513-527

Global analysis of gene expression during development and ripening of citrus fruit flesh. A proposed mechanism for citric acid utilization

Author keywords

Acid metabolism; cDNA microarray; Citrus clementina; Fruit growth; Mandarin

Indexed keywords

DNA; FRUITS; GENES; PROTEINS;

EID: 33750431052     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-006-9037-7     Document Type: Article
Times cited : (167)

References (52)
  • 3
    • 84970627447 scopus 로고
    • Morphological, anatomical and physiological changes in the developing fruit of the Valencia orange, Citrus sinensis (L) Osbeck
    • Bain JM (1958) Morphological, anatomical and physiological changes in the developing fruit of the Valencia orange, Citrus sinensis (L) Osbeck. Aust J Bot 6:1-24
    • (1958) Aust J Bot , vol.6 , pp. 1-24
    • Bain, J.M.1
  • 4
    • 0002671402 scopus 로고
    • Citrus fruit
    • Seymour GB, Taylor JE, Tucker GA (eds) Chapman & Hall, London
    • Baldwin EA (1993) Citrus fruit. In: Seymour GB, Taylor JE, Tucker GA (eds) Biochemistry of fruit ripening. Chapman & Hall, London, pp 107-149
    • (1993) Biochemistry of Fruit Ripening , pp. 107-149
    • Baldwin, E.A.1
  • 6
    • 0034623487 scopus 로고    scopus 로고
    • Changes in amino acid composition and nitrogen metabolizing enzymes in ripening fruits of Lycopersicon esculentum Mill
    • Boggio SB, Palatnik JF, Heldt HW, Valle EM (2000) Changes in amino acid composition and nitrogen metabolizing enzymes in ripening fruits of Lycopersicon esculentum Mill. Plant Sci 159:125-133
    • (2000) Plant Sci , vol.159 , pp. 125-133
    • Boggio, S.B.1    Palatnik, J.F.2    Heldt, H.W.3    Valle, E.M.4
  • 7
    • 0242340626 scopus 로고    scopus 로고
    • Different induction patterns of glutamate metabolizing enzymes in ripening fruits of the tomato mutant green flesh
    • Bortolotti S, Boggio SB, Delgado L, Orellano EG, Valle EM (2003) Different induction patterns of glutamate metabolizing enzymes in ripening fruits of the tomato mutant green flesh. Physiol Plant 119:384-391
    • (2003) Physiol Plant , vol.119 , pp. 384-391
    • Bortolotti, S.1    Boggio, S.B.2    Delgado, L.3    Orellano, E.G.4    Valle, E.M.5
  • 8
    • 0031403384 scopus 로고    scopus 로고
    • The metabolism and functions of c-aminobutyric acid
    • Bown AW, Shelp BJ (1997) The metabolism and functions of c-aminobutyric acid. Plant Physiol 115:1-5
    • (1997) Plant Physiol , vol.115 , pp. 1-5
    • Bown, A.W.1    Shelp, B.J.2
  • 9
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • Bustin SA (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 29:23-39
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 10
    • 0028008446 scopus 로고
    • Ammonium assimilation and the role of γ-aminobutyric acid in pH homeostasis in carrot cell suspensions
    • Carroll AD, Fox GG, Laurie S, Phillips R, Ratcliffe RG, Stewart GR (1994) Ammonium assimilation and the role of γ-aminobutyric acid in pH homeostasis in carrot cell suspensions. Plant Physiol 106:513-520
    • (1994) Plant Physiol , vol.106 , pp. 513-520
    • Carroll, A.D.1    Fox, G.G.2    Laurie, S.3    Phillips, R.4    Ratcliffe, R.G.5    Stewart, G.R.6
  • 11
    • 0008610476 scopus 로고
    • Anthocyanins of blood oranges
    • Chandler BV (1958) Anthocyanins of blood oranges. Nature 182:933
    • (1958) Nature , vol.182 , pp. 933
    • Chandler, B.V.1
  • 12
    • 0032422614 scopus 로고    scopus 로고
    • Plant NADP-dependent isocitrate dehydrogenases are predominantly localized in the cytosol
    • Chen R (1998) Plant NADP-dependent isocitrate dehydrogenases are predominantly localized in the cytosol. Planta 207:280-285
    • (1998) Planta , vol.207 , pp. 280-285
    • Chen, R.1
  • 14
    • 0030116063 scopus 로고    scopus 로고
    • Characterization of a new vacuolar membrane aquaporin sensitive to mercury at a unique site
    • Daniels MJ, Chaumont F, Mirkov TE, Chrispeels MJ (1996) Characterization of a new vacuolar membrane aquaporin sensitive to mercury at a unique site. Plant Cell 8:587-599
    • (1996) Plant Cell , vol.8 , pp. 587-599
    • Daniels, M.J.1    Chaumont, F.2    Mirkov, T.E.3    Chrispeels, M.J.4
  • 16
    • 0347492019 scopus 로고    scopus 로고
    • AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors
    • Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E (2003) AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics 4:25
    • (2003) BMC Bioinformatics , vol.4 , pp. 25
    • Davuluri, R.V.1    Sun, H.2    Palaniswamy, S.K.3    Matthews, N.4    Molina, C.5    Kurtz, M.6    Grotewold, E.7
  • 18
    • 0029111038 scopus 로고
    • Changes in NADP(+)-linked isocitrate dehydrogenase during tomato fruit ripening-characterization of the predominant cytosolic enzyme from green and ripe pericarp
    • Gallardo F, Gálvez S, Gadal P, Cánovas FM (1995) Changes in NADP(+)-linked isocitrate dehydrogenase during tomato fruit ripening-characterization of the predominant cytosolic enzyme from green and ripe pericarp. Planta 196:148-154
    • (1995) Planta , vol.196 , pp. 148-154
    • Gallardo, F.1    Gálvez, S.2    Gadal, P.3    Cánovas, F.M.4
  • 21
    • 2942690153 scopus 로고    scopus 로고
    • Genetic regulation of fruit development and ripening
    • Giovannoni J (2004) Genetic regulation of fruit development and ripening. Plant Cell 16:S170-S180
    • (2004) Plant Cell , vol.16
    • Giovannoni, J.1
  • 22
    • 0343618441 scopus 로고    scopus 로고
    • Hormonal regulation of fruitlet abscission induced by carbohydrate shortage in citrus
    • Gómez-Cadenas A, Mehouachi J, Tadeo FR, Primo-Millo E, Talón M (2000) Hormonal regulation of fruitlet abscission induced by carbohydrate shortage in citrus. Planta 210:636-643
    • (2000) Planta , vol.210 , pp. 636-643
    • Gómez-Cadenas, A.1    Mehouachi, J.2    Tadeo, F.R.3    Primo-Millo, E.4    Talón, M.5
  • 23
    • 0346655258 scopus 로고    scopus 로고
    • Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis
    • Hashimoto JG, Beadles-Bohling AS, Wiren KM (2004) Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis. BioTechniques 36:54-60
    • (2004) BioTechniques , vol.36 , pp. 54-60
    • Hashimoto, J.G.1    Beadles-Bohling, A.S.2    Wiren, K.M.3
  • 24
    • 3543013205 scopus 로고    scopus 로고
    • Transcriptional programs of early reproductive stages in Arabidopsis
    • Hennig L, Gruissem W, Grossniklaus U, Köhler C (2004) Transcriptional programs of early reproductive stages in Arabidopsis. Plant Physiol 135:1765-1775
    • (2004) Plant Physiol , vol.135 , pp. 1765-1775
    • Hennig, L.1    Gruissem, W.2    Grossniklaus, U.3    Köhler, C.4
  • 25
    • 0035108235 scopus 로고    scopus 로고
    • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    • Herrero J, Valencia A, Dopazo J (2001) A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17:126-136
    • (2001) Bioinformatics , vol.17 , pp. 126-136
    • Herrero, J.1    Valencia, A.2    Dopazo, J.3
  • 26
    • 0036010137 scopus 로고    scopus 로고
    • Enzyme redundancy and the importance of 2-oxoglutarate in plant ammonium assimilation
    • Hodges M (2002) Enzyme redundancy and the importance of 2-oxoglutarate in plant ammonium assimilation. J Exp Bot 53:905-916
    • (2002) J Exp Bot , vol.53 , pp. 905-916
    • Hodges, M.1
  • 27
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W, Heydebreck AV, Sültmann H, Poustka A, Vingron M (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18:S96-S104
    • (2002) Bioinformatics , vol.18
    • Huber, W.1    Heydebreck, A.V.2    Sültmann, H.3    Poustka, A.4    Vingron, M.5
  • 28
    • 10044270747 scopus 로고    scopus 로고
    • Hybridization and posthybridization washing
    • Bowtell D, Sambrook J (eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Ideker T, Ybarra S, Grimmond S (2003) Hybridization and posthybridization washing. In: Bowtell D, Sambrook J (eds) DNA microarrays: a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY pp 228-239
    • (2003) DNA Microarrays: A Molecular Cloning Manual , pp. 228-239
    • Ideker, T.1    Ybarra, S.2    Grimmond, S.3
  • 29
    • 0034994023 scopus 로고    scopus 로고
    • In vivo sucrose stimulation of colour change in citrus fruit epicarps: Interactions between nutritional and hormonal signals
    • Iglesias DJ, Tadeo FR, Legaz F, Primo-Millo E, Talón M (2001) In vivo sucrose stimulation of colour change in citrus fruit epicarps: interactions between nutritional and hormonal signals. Physiol Plant 112:244-250
    • (2001) Physiol Plant , vol.112 , pp. 244-250
    • Iglesias, D.J.1    Tadeo, F.R.2    Legaz, F.3    Primo-Millo, E.4    Talón, M.5
  • 30
    • 0037301723 scopus 로고    scopus 로고
    • Fruit set dependence on carbohydrate availability in citrus trees
    • Iglesias DJ, Tadeo FR, Primo-Millo E, Talón M (2003) Fruit set dependence on carbohydrate availability in citrus trees. Tree Physiol 23:199-204
    • (2003) Tree Physiol , vol.23 , pp. 199-204
    • Iglesias, D.J.1    Tadeo, F.R.2    Primo-Millo, E.3    Talón, M.4
  • 31
    • 0031282508 scopus 로고    scopus 로고
    • Induction of a citrus gene highly homologous to plant and yeast thi genes involved in thiamine biosynthesis during natural and ethylene-induced fruit maturation
    • Jacob-Wilk D, Goldschmidt EE, Riov J, Sadka A, Holland D (1997) Induction of a citrus gene highly homologous to plant and yeast thi genes involved in thiamine biosynthesis during natural and ethylene-induced fruit maturation. Plant Mol Biol 35:661-666
    • (1997) Plant Mol Biol , vol.35 , pp. 661-666
    • Jacob-Wilk, D.1    Goldschmidt, E.E.2    Riov, J.3    Sadka, A.4    Holland, D.5
  • 32
    • 0032711298 scopus 로고    scopus 로고
    • Tonoplast intrinsic protein isoforms as markers for vacuolar functions
    • Jauh GY, Phillips TE, Rogers JC (1999) Tonoplast intrinsic protein isoforms as markers for vacuolar functions. Plant Cell 11:1867-1882
    • (1999) Plant Cell , vol.11 , pp. 1867-1882
    • Jauh, G.Y.1    Phillips, T.E.2    Rogers, J.C.3
  • 33
    • 0034870819 scopus 로고    scopus 로고
    • The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants
    • Johanson U, Karlsson M, Johansson I, Gustavsson S, Sjövall S, Fraysse L, Weig AR, Kjellbom P (2001) The complete set of genes encoding major intrinsic proteins in Arabidopsis provides a framework for a new nomenclature for major intrinsic proteins in plants. Plant Physiol 126:1358-1369
    • (2001) Plant Physiol , vol.126 , pp. 1358-1369
    • Johanson, U.1    Karlsson, M.2    Johansson, I.3    Gustavsson, S.4    Sjövall, S.5    Fraysse, L.6    Weig, A.R.7    Kjellbom, P.8
  • 35
    • 0029132384 scopus 로고
    • Defoliation increases fruit abscission and reduces carbohydrate levels in developing fruits and woody tissues of Citrus unshiu
    • Mehouachi J, Serna D, Zaragoza S, Agusti M, Talón M, Primo-Millo E (1995) Defoliation increases fruit abscission and reduces carbohydrate levels in developing fruits and woody tissues of Citrus unshiu. Plant Sci 107:189-197
    • (1995) Plant Sci , vol.107 , pp. 189-197
    • Mehouachi, J.1    Serna, D.2    Zaragoza, S.3    Agusti, M.4    Talón, M.5    Primo-Millo, E.6
  • 36
    • 0032510730 scopus 로고    scopus 로고
    • Characterization of gene repertoires at mature stage of citrus fruits through random sequencing and analysis of redundant metallothionein-like genes expressed during fruit development
    • Moriguchi T, Kita M, Hisada S, Endo-Inagaki T, Omura M (1998) Characterization of gene repertoires at mature stage of citrus fruits through random sequencing and analysis of redundant metallothionein-like genes expressed during fruit development. Gene 211:221-227
    • (1998) Gene , vol.211 , pp. 221-227
    • Moriguchi, T.1    Kita, M.2    Hisada, S.3    Endo-Inagaki, T.4    Omura, M.5
  • 37
    • 0038460047 scopus 로고    scopus 로고
    • AraCyc: A biochemical pathway database for Arabidopsis
    • Mueller LA, Zhang P, Rhee SY (2003) AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiol 132:453-460
    • (2003) Plant Physiol , vol.132 , pp. 453-460
    • Mueller, L.A.1    Zhang, P.2    Rhee, S.Y.3
  • 38
    • 51249188465 scopus 로고
    • Distribution of free and conjugated sterols in orange and tangor juice sacs
    • Nagy S, Nordby HE (1971) Distribution of free and conjugated sterols in orange and tangor juice sacs. Lipids 6:826-830
    • (1971) Lipids , vol.6 , pp. 826-830
    • Nagy, S.1    Nordby, H.E.2
  • 39
    • 0037318993 scopus 로고    scopus 로고
    • Characterization of Pinalate, a novel Citrus sinensis mutant with a fruit-specific alteration that results in yellow pigmentation and decreased ABA content
    • Rodrigo MJ, Marcos J, Alférez F, Mallent MD, Zacarías L 2003 Characterization of Pinalate, a novel Citrus sinensis mutant with a fruit-specific alteration that results in yellow pigmentation and decreased ABA content. J Exp Bot 54:727-738
    • (2003) J Exp Bot , vol.54 , pp. 727-738
    • Rodrigo, M.J.1    Marcos, J.2    Alférez, F.3    Mallent, M.D.4    Zacarías, L.5
  • 41
    • 0035983837 scopus 로고    scopus 로고
    • Contra-puntal networks of gene expression during Arabidopsis seed filling
    • Ruuska SA, Girke T, Benning C, Ohlrogge JB (2002) Contra-puntal networks of gene expression during Arabidopsis seed filling. Plant Cell 14:1191-1206
    • (2002) Plant Cell , vol.14 , pp. 1191-1206
    • Ruuska, S.A.1    Girke, T.2    Benning, C.3    Ohlrogge, J.B.4
  • 42
    • 0034025913 scopus 로고    scopus 로고
    • Aconitase activity and expression during the development of lemon fruit
    • Sadka A, Dahan E, Cohen L, Marsh KB (2000a) Aconitase activity and expression during the development of lemon fruit. Physiol Plant 108:255-262
    • (2000) Physiol Plant , vol.108 , pp. 255-262
    • Sadka, A.1    Dahan, E.2    Cohen, L.3    Marsh, K.B.4
  • 43
    • 0034623170 scopus 로고    scopus 로고
    • +-isocitrate dehydrogenase gene expression and isozyme activity during citrus fruit development
    • +-isocitrate dehydrogenase gene expression and isozyme activity during citrus fruit development. Plant Sci 158:173-181
    • (2000) Plant Sci , vol.158 , pp. 173-181
    • Sadka, A.1    Dahan, E.2    Or, E.3    Cohen, L.4
  • 44
    • 0036008575 scopus 로고    scopus 로고
    • A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis
    • Saito C, Ueda T, Abe H, Wada Y, Kuroiwa T, Hisada A, Furuya M, Nakano A (2002) A complex and mobile structure forms a distinct subregion within the continuous vacuolar membrane in young cotyledons of Arabidopsis. Plant J 29:245-255
    • (2002) Plant J , vol.29 , pp. 245-255
    • Saito, C.1    Ueda, T.2    Abe, H.3    Wada, Y.4    Kuroiwa, T.5    Hisada, A.6    Furuya, M.7    Nakano, A.8
  • 47
    • 15744374320 scopus 로고    scopus 로고
    • Toward comprehensive expression profiling by microarray analysis in citrus: Monitoring the expression profiles of 2213 genes during fruit development
    • Shimada T, Fuiii H, Endo T, Yazaki J, Kishimoto N, Shimbo K, Kikuchi S, Omura M (2005) Toward comprehensive expression profiling by microarray analysis in citrus: monitoring the expression profiles of 2213 genes during fruit development. Plant Sci 168:1383-1385
    • (2005) Plant Sci , vol.168 , pp. 1383-1385
    • Shimada, T.1    Fuiii, H.2    Endo, T.3    Yazaki, J.4    Kishimoto, N.5    Shimbo, K.6    Kikuchi, S.7    Omura, M.8
  • 48
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • Article 3
    • Smith GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3, No. 1, Article 3
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1
    • Smith, G.K.1
  • 50
    • 0000128265 scopus 로고
    • Characterization of plant growth substance in Citrus unshiu and their change in fruti development
    • Takahashi N, Yamaguchi I, Kono T, Igoshi M, Hirose K (1965) Characterization of plant growth substance in Citrus unshiu and their change in fruti development. Plant Cell Physiol 16:101-111
    • (1965) Plant Cell Physiol , vol.16 , pp. 101-111
    • Takahashi, N.1    Yamaguchi, I.2    Kono, T.3    Igoshi, M.4    Hirose, K.5
  • 52
    • 0035844995 scopus 로고    scopus 로고
    • Microarray-based analysis of gene expression in very large gene families: The cytochrome P450 gene superfamily of Arabidopsis thaliana
    • Xu W, Bak S, Decker A, Paquette SM, Feyereisen R, Galbraith DW (2001) Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana. Gene 272:61-74
    • (2001) Gene , vol.272 , pp. 61-74
    • Xu, W.1    Bak, S.2    Decker, A.3    Paquette, S.M.4    Feyereisen, R.5    Galbraith, D.W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.