Microsatellite typing for DRB1 alleles: Application to the analysis of HLA associations with rheumatoid arthritis

Genes and Immunity

Volumn 7, Issue 7, 2006, Pages 533-543

  Lee, H S ^a,f   Li, W ^a   Lee, A ^a   Rodine, P ^b   Graham, R R ^c,d   Ortmann, W A ^b   Batliwalla, F ^a   Lee, K W ^e   Bae, S C ^f   Behrens, T W ^b   Gregersen, P K ^a  

^a FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH   (United States)

^b UNIVERSITY OF MINNESOTA MEDICAL SCHOOL   (United States)

^c BROAD INSTITUTE OF MIT AND HARVARD   (United States)

^d MASSACHUSETTS GENERAL HOSPITAL   (United States)

^e Hallym University   (South Korea)

^f Hanyang University College of Medicine   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

HLA DR ANTIGEN;

ARTICLE; CAUCASIAN; CONTROLLED STUDY; COST EFFECTIVENESS ANALYSIS; DISEASE ASSOCIATION; DISEASE PREDISPOSITION; GENE FREQUENCY; GENETIC CONSERVATION; GENETIC SCREENING; GENETIC SUSCEPTIBILITY; GENOTYPE; HAPLOTYPE; HUMAN; KOREA; MAJOR CLINICAL STUDY; MICROSATELLITE MARKER; MOLECULAR TYPING; POLYMERASE CHAIN REACTION; PREDICTION; PRIORITY JOURNAL; RHEUMATOID ARTHRITIS; SENSITIVITY AND SPECIFICITY;

ALLELES; ARTHRITIS, RHEUMATOID; ASIAN CONTINENTAL ANCESTRY GROUP; CASE-CONTROL STUDIES; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENE FREQUENCY; HAPLOTYPES; HISTOCOMPATIBILITY TESTING; HLA-DR ANTIGENS; HUMANS; KOREA; MICROSATELLITE REPEATS; NORTH AMERICA; SENSITIVITY AND SPECIFICITY;

EID: 33750352877     PISSN: 14664879     EISSN: 14765470     Source Type: Journal    
DOI: 10.1038/sj.gene.6364325     Document Type: Article

References (25)

1. Shiina T, Inoko H, Kulski JK. An update of the HLA genomic region, locus information and disease associations: 2004. Tissue Antigens 2004; 64: 631-649.
2. Cooke GS, Hill AV. Genetics of susceptibility to human infectious disease. Nat Rev Genet 2001; 2: 967-977.
3. Larsen CE, Alper CA. The genetics of HLA-associated disease. Curr Opin Immunol 2004; 16: 660-667.
4. Buckner JH, Nepom GT. Genetics of rheumatoid arthritis: Is there a scientific explanation for the human leukocyte antigen association? Curr Opin Rheumatol 2002; 14: 254-259.
5. Begnon JD, Fernandez-Vina MA. Protocols of the 12th International Histocompatibility Workshop for typing of HLA class II alleles by DNA amplification by the polymerase chain reaction (PCR) and hybridization with sequence specific oligonucleotide probes (SSOP). In: Charron D (ed). Genetic Diversity of HLA: Functional and Medical Implication. EDK: Paris, 1997, pp. 584-595.
6. Jawaheer D, Li W, Graham RR, Chen W, Damle A, Xiao X et al. Dissecting the genetic complexity of the association between human leukocyte antigens and rheumatoid arthritis. Am J Hum Genet 2002; 71: 585-594.
7. Graham RR, Ortmann WA, Langefeld CD, Jawaheer D, Selby SA, Rodine PR et al. Visualizing human leukocyte antigen class II risk haplotypes in human systemic lupus erythematosus. Am J Hum Genet 2002, 71: 543-553.
8. Stephens M, Donnelly P. A comparison of bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 2003; 73: 1162-1169.
9. Stephens M, Smith NJ, Donnelly P. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 2001; 68: 978-989.
10. Klitz W, Maiers M, Spellman S, Baxter-Lowe LA, Schmeckpeper B, Williams TM et al. New HLA haplotype frequency reference standards: high-resolution and large sample typing of HLA DR-DQ haplotypes in a sample of European Americans. Tissue Antigens 2003; 62: 296-307.
11. Merryman P, Silver J, Gregersen PK, Solomon G, Winchester R. A novel association of DQ alpha and DQ beta genes in the DRw10 haplotype. Determination of a DQw1 specificity by the DQ beta-chain. J Immunol 1989; 143: 2068-2073.
12. Song EY, Park MH, Kang SJ, Park HJ, Kim BC, Tokunaga K et al. HLA class II allele and haplotype frequencies in Koreans based on 107 families. Tissue Antigens 2002; 59: 475-486.
13. Lee KW, Oh DH, Lee C, Yang SY. Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population. Tissue Antigens 2005; 65: 437-447.
14. Saito S, Ota S, Yamada E, Inoko H, Ota M. Alle frequencies and haplotypic associations defined by allelic DNA typing at HLA class I and class II loci in the Japanese population. Tissue Antigens 2000; 56: 522-529.
15. Bergstrom TF, Josefsson A, Erlich HA, Gyllensten U. Recent origin of HLA-DRB1 alleles and implications for human evolution. Nat Genet 1998; 18: 237-242.
16. Hohjoh H, Ohashi J, Takasu M, Nishioka T, Ishida T, Tokunaga K. Recent divergence of the HLA-DRB1*04 allelic lineage from the DRB1*0701 lineage after the separation of the human and chimpanzee species. Immunogenetics 2003; 54: 856-861.
17. Gaudieri S, Leelayuwat C, Tay GK, Townend DC, Dawkins RL. The major histocompatability complex (MHC) contains conserved polymorphic genomic sequences that are shuffled by recombination to form ethnic-specific haplotypes. J Mol Evol 1997, 45: 17-23.
18. Lai Y, Sun F. The relationship between microsatellite slippage mutation rate and the number of repeat units. Mol Biol Evol 2003; 20: 2123-2131.
19. Lee HS, Lee KW, Song GG, Kim HA, Kim SY, Bae SC. Increased susceptibility to rheumatoid arthritis in Koreans heterozygous for HLA-DRB1*0405 and *0901. Arthritis Rheum 2004; 50: 3468-3475.
20. Hall FC, Weeks DE, Camilleri JP, Williams LA, Amos N, Darke C et al. Influence of the HLA-DRB1 locus on susceptibility and severity in rheumatoid arthritis. QJM 1996; 89: 821-829.
21. MacGregor A, Ollier W, Thomson W, Jawaheer D, Silman A. HLA-DRB1*0401/ 0404 genotype and rheumatoid arthritis: Increased association in men, young age at onset, and disease severity. J Rheumatol 1995; 22: 1032-1036.
22. Newton JL, Harney SM, Wordsworth BP, Brown MA. A review of the MHC genetics of rheumatoid arthritis. Genes Immun 2004; 5: 151-157.
23. Gregersen PK. The North American Rheumatoid Arthritis Consortium-bringing genetic analysis to bear on disease susceptibility, severity, and outcome. Arthritis Care Res 1998; 11: 1-2.
24. Mitchell MK, Gregersen PK, Johnson S, Parsons R, Vlahov D. The New York Cancer Project: Rationale, organization, design, and baseline characteristics. J Urban Health 2004; 81: 301-310.
25. Arnett FC, Edworthy SM, Bloch DA, McShane DJ, Fries JF, Cooper NS et al. The American Rheumatism Association 1987 revised criteria for the classification of rheumatoid arthritis. Arthritis Rheum 1988; 31: 315-324.