Allelic and haplotypic diversity of HLA-A, -B, -C, -DRB1, and -DQB1 genes in the Korean population

Tissue Antigens

Volumn 65, Issue 5, 2005, Pages 437-447

  Lee, K W ^a,c   Oh, D H ^a   Lee, C ^a   Yang, S Y ^b  

^a Hallym University   (South Korea)

^b Histogenetics Inc   (United States)

^c Hallym University Sacred Heart Hospital   (South Korea)

Author keywords

Diversity; High resolution typing; Human leukocyte antigen; Korean

Indexed keywords

HLA A ANTIGEN; HLA ANTIGEN; HLA B ANTIGEN; HLA C ANTIGEN; HLA DQB1 ANTIGEN; HLA DR ANTIGEN;

ALLELE; ARTICLE; DNA FINGERPRINTING; DNA SEQUENCE; FORENSIC IDENTIFICATION; GENE FREQUENCY; GENE IDENTIFICATION; GENE LOCUS; GENETIC ASSOCIATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; HAPLOTYPE; HLA TYPING; HUMAN; KOREA; MAXIMUM LIKELIHOOD METHOD; NORMAL HUMAN; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEROLOGY;

ALLELES; ASIAN CONTINENTAL ANCESTRY GROUP; ETHNIC GROUPS; GENE FREQUENCY; GENOTYPE; HAPLOTYPES; HLA-A ANTIGENS; HLA-B ANTIGENS; HLA-C ANTIGENS; HLA-DQ ANTIGENS; HLA-DR ANTIGENS; HUMANS; JAPAN; KOREA; LIKELIHOOD FUNCTIONS; MAJOR HISTOCOMPATIBILITY COMPLEX; POLYMERASE CHAIN REACTION;

EID: 17844408704     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2005.00386.x     Document Type: Article

References (40)

1. Carrington M, Nelson GW, Martin MP et al. HLA and HTV-1: heterozygote advantage and B*35-Cw*04 disadvantage. Science 1999: 283: 1748-52.
2. Hill AV. The immunogenetics of human infectious diseases. Annu Rev Immunol 1998: 16: 593-617.
3. Flomenberg N, Baxter-Lowe LA, Confer D et al. Impact of HLA class I and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome. Blood 2004: 104: 1923-30.
4. Ottinger HD, Ferencik S, Beelen DW et al. Impact of HLA-A,B,C allele mismatches on outcome after unrelated blood stem cell transplantation in whites. Transplantation 2004: 78: 1077-80.
5. Morishima Y, Sasazuki T, Inoko H et al. The clinical significance of human leukocyte antigen (HLA) allele compatibility in patients receiving a marrow transplant from serologically HLA-A, HLA-B, and HLA-DR matched unrelated donors. Blood 2002: 99: 4200-6.
6. Cao K, Hollenbach J, Shi X, Shi W, Chopek M, Fernandez-Vina MA. Analysis of the frequencies of HLA-A, B, and C alleles and haplotypes in the five major ethnic groups of the United States reveals high levels of diversity in these loci and contrasting distribution patterns in these populations. Hum Immunol 2001: 62: 1009-30.
7. Imanishi T, Wakisaka A, Gojobori T. Genetic relationships among various human populations indicated by MHC polymorphisms. In: Tsuji K, Aizawa M, Sasazuki T, eds. HLA 1991. Oxford: Oxford University Press, 1992: 627-32.
8. Park MH, Hwang YS, Park KS et al. HLA haplotypes in Koreans based on 107 families. Tissue Antigens 1998: 51: 347-55.
9. Park MH, Kim HS, Kang SJ. HLA-A,-B,-DRB1 allele and haplotype frequencies in 510 Koreans. Tissue Antigens 1999: 53: 386-90.
10. Song EY, Park MH, Kang SJ et al. HLA class II allele and haplotype frequencies in Koreans based on 107 families. Tissue Antigens 2002: 59: 475-86.
11. Lee KW. DR6 in Koreans. DR11 frequently acts as a recipient gene to create DR13 alleles. Hum Immunol 1993: 37: 229-36.
12. Lee KW, Kim YS. Serologic ambiguity and allelic frequency of the HLA-B40 family in the Korean population. Tissue Antigens 1997: 49: 383-88.
13. Lee KW, Tang TF, Yang SY. HLA-A*30 alleles and associated haplotypes in the Korean population. Tissue Antigens 1999: 54: 198-200.
14. Lee KW, Cho HC. Serologic heterogeneity of HLA-A24 correlates with allelic types in the Korean population. J Korean Med Sci 2000: 15: 623-26.
15. Lee KW, Jeon H, Park JY. HLA-B*15 diversity in the Korean population. Tissue Antigens 2000: 56: 428-35.
16. Lee KW, Yang SY. HLA-B22 diversity including a novel B54 variant (B*5507) in the Korean population. Hum Immunol 1999: 60: 731-37.
17. Park MH, Whang DH, Kang SJ, Han KS. HLA-A*02 allele frequencies and haplotypic associations in Koreans. Tissue Antigens 2000: 55: 250-56.
18. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988: 16: 1215.
19. Prasad VK, Yang SY. Allele assignment for HLA-A, -B, and -C genes to the Tenth International Histocompatibility Workshop cell lines. Tissue Antigens 1996: 47: 538-46.
20. Cereb N, Yang SY. Dimorphic primers derived from intron 1 for use in the molecular typing of HLA-B alleles. Tissue Antigens 1997: 50: 74-76.
21. Begnon JD, Fernandez-Vina MA. Protocols of the 12th International Histocompatibility Workshop for typing of HLA class II alleles by DNA amplification by the polymerase chain reaction (PCR) and hybridization with sequence specific oligonucleotide probes (SSOP). In: Charron D, ed. Genetic Diversity of HLA: Functional and Medical Implication. Paris: EDK, 1997: 584-95.
22. Hurely CK, Fernandez-Vina MA, Middleton D et al. Class II HLA typing primers and probes. In: Tilanus MG, Hansen JA, Hurley CK, eds. IHWG Technical Manual Seattle: International Histocompatibility Working Group, 2000: TM2C 1-77.
23. Marsh SG, Bodmer JG, Albert ED et al. Nomenclature for factors of the HLA system, 2000. Tissue Antigens 2001: 57: 236-83.
24. Hurely CK. Sequence-based typing for HLA-A: class I sequencing amplification of exons 2 and 3 based upon Cereb. In: Tilanus MG, Hansen JA, Hurley CK, eds. IHWG Technical Manual. Seattle: International Histocompatibility Working Group, 2000: TM7A 1-5.
25. Hurely CK. Sequence-based typing for HLA-B: class I sequencing amplification of exons 2 and 3 based upon Cereb. In: Tilanus MG, Hansen JA, Hurley CK, eds. IHWG Technical Manual. Seattle: International Histocompatibility Working Group, 2000: TM8A 1-5.
26. Dunn P. Sequencing-based typing for HLA-A,B,C. In: Tilanus MG, Hansen JA, Hurley CK, eds. IHWG Technical Manual. Seattle: International Histocompatibility Working Group, 2000: TM30A 1-5.
27. Kotsch K, Wehling J, Blasczyk R. Sequencing of HLA class II genes based on the conserved diversity of the non-coding regions: sequencing based typing of HLA-DRB genes. Tissue Antigens 1999: 53: 486-97.
28. Van der Zwan A, Griffith B, Rozemuller E, Williams T, Tilanus MG. Sequence-based typing for HLA-DQB1 strategy for ABI sequencing equipment. In: Tilanus MG, Hansen JA, Hurley CK, eds. IHWG Technical Manual. Seattle: International Histocompatibility Working Group, 2000: TM12A 1-4.
29. Imanishi T, Akaza T, Kimura A, Tokunaga K, Gojobori T. Estimation of allele and haplotype frequencies for HLA and complement loci. In: Tsuji K, Aizawa M, Sasazuki T, eds. HLA 1991. Oxford: Oxord University Press, 1992: 76-79.
30. Ewens WJ. The sampling theory of selectively neutral alleles. Theor Popul Biol 1972: 3: 87-112.
31. Watterson GA. The homozygosity test of neutrality. Genetics 1978: 88: 405-17.
32. Saito S, Ota S, Yamada E, Inoko H, Ota M. Allele frequencies and haplotypic associations defined by allelic DNA typing at HLA class I and class II loci in the Japanese population. Tissue Antigens 2000: 56: 522-29.
33. Leffell MS, Fallin MD, Erlich HA et al. HLA antigens, alleles and haplotypes among the Yup'ik Alaska natives: report of the ASHI Minority Workshops, Part II. Hum Immunol 2002: 63: 614-25.
34. Cao K, Moormann AM, Lyke KE et al. Differentiation between African populations is evidenced by the diversity of alleles and haplotypes of HLA class I loci. Tissue Antigens 2004: 63: 293-325.
35. Trachtenberg EA, Erlich HA, Rickards O, DeStefano GF, Klitz W. HLA class II linkage disequilibrium and haplotype evolution in the Cayapa Indians of Ecuador. Am J Hum Genet 1995: 57: 415-24.
36. Ellis JM, Mack SJ, Leke RF, Quakyi I, Johnson AH, Hurley CK. Diversity is demonstrated in class I HLA-A and HLA-B alleles in Cameroon, Africa: description of HLA-A*03012, *2612, *3006 and HLA-B*1403, *4016, *4703. Tissue Antigens 2000: 56: 291-302.
37. Mack SJ, Bugawan TL, Moonsamy PV et al. Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions. Tissue Antigens 2000: 55: 383-400.
38. Gans CP, Tang TF, Slack R, Ng J, Hartzman RJ, Hurley CK. DRB1*14 diversity and DRB3 associations in four major population groups in the United States. Tissue Antigens 2002: 59: 364-69.
39. Lee KW, Steiner N, Hurley CK. Characterization of an HLA-B62 variant (B*1538) exhibiting an additional B52 serologic reactivity. Tissue Antigens 1997: 50: 662-64.
40. Tokunaga K, Ishikawa Y, Ogawa A et al. Sequence-based association analysis of HLA class I and II alleles in Japanese supports conservation of common haplotypes. Immunogenetics 1997: 46: 199-205.