메뉴 건너뛰기




Volumn 63, Issue 4, 2006, Pages 513-525

Protein superfamily evolution and the Last Universal Common Ancestor (LUCA)

Author keywords

Ancestral protein families; Ancestral protein functions; Evolutionary temperature; Genome comparison; Last Universal Common Ancestor; Protein evolution; Protein structural domains

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CELL FUNCTION; CONTROLLED STUDY; CORRELATION COEFFICIENT; EVOLUTIONARY HOMOLOGY; GENE MUTATION; GENE SEQUENCE; GENOME SIZE; NONHUMAN; PHYLOGENY; PROGENOTE; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; SIGNAL TRANSDUCTION;

EID: 33750273036     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-005-0289-7     Document Type: Article
Times cited : (91)

References (38)
  • 3
    • 0035519262 scopus 로고    scopus 로고
    • Comparative genomics and bioenergetics
    • Castresana J (2001) Comparative genomics and bioenergetics. Biochim Biophys Acta 1506:147-162
    • (2001) Biochim Biophys Acta , vol.1506 , pp. 147-162
    • Castresana, J.1
  • 4
    • 0034799370 scopus 로고    scopus 로고
    • Whole genome plasticity in pathogenic bacteria
    • Dobrindt U, Hacker J (2001) Whole genome plasticity in pathogenic bacteria. Curr Opin Microbiol 4:550-557
    • (2001) Curr Opin Microbiol , vol.4 , pp. 550-557
    • Dobrindt, U.1    Hacker, J.2
  • 5
    • 0034027594 scopus 로고    scopus 로고
    • The nature of the universal ancestor and the evolution of the proteome
    • Doolittle WF (2000) The nature of the universal ancestor and the evolution of the proteome. Curr Opin Struct Biol 10:355-358
    • (2000) Curr Opin Struct Biol , vol.10 , pp. 355-358
    • Doolittle, W.F.1
  • 6
    • 28044436397 scopus 로고    scopus 로고
    • Accelerated evolution associated with genome reduction in a free-living prokaryote
    • Dufresne A, Garczarek L, Partensky F (2005) Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol 6:R14
    • (2005) Genome Biol , vol.6
    • Dufresne, A.1    Garczarek, L.2    Partensky, F.3
  • 8
    • 1542272747 scopus 로고    scopus 로고
    • Comparative genomics minimal gene-sets and the last universal commonancestor
    • Koonin EV (2003) Comparative genomics minimal gene-sets and the last universal commonancestor. Nat Rev Microbiol 1:127-136
    • (2003) Nat Rev Microbiol , vol.1 , pp. 127-136
    • Koonin, E.V.1
  • 10
    • 0033199713 scopus 로고    scopus 로고
    • Did DNA replication evolve twice independently?
    • Leipe DD, Aravind L, Koonin EV (1999) Did DNA replication evolve twice independently? Nucleic Acids Res 27:3389-3401
    • (1999) Nucleic Acids Res , vol.27 , pp. 3389-3401
    • Leipe, D.D.1    Aravind, L.2    Koonin, E.V.3
  • 11
    • 0345864007 scopus 로고    scopus 로고
    • The Genomic Threading Database: A comprehensive resource for structural annotations of the genomes from key organisms
    • McGuffin LJ, Street SA, Bryson K, Sorensen SA, Jones DT (2004) The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms. Nucleic Acids Res 32:D196-D199
    • (2004) Nucleic Acids Res , vol.32
    • McGuffin, L.J.1    Street, S.A.2    Bryson, K.3    Sorensen, S.A.4    Jones, D.T.5
  • 13
    • 0035479142 scopus 로고    scopus 로고
    • Deletional bias and the evolution of bacterial genomes
    • Mira A, Ochman H, Moran NA (2001) Deletional bias and the evolution of bacterial genomes. Trends Genet 17:589-596
    • (2001) Trends Genet , vol.17 , pp. 589-596
    • Mira, A.1    Ochman, H.2    Moran, N.A.3
  • 14
    • 2942622384 scopus 로고    scopus 로고
    • Algorithms for computing parsimonious evolutionary scenarios for genome evolution the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes
    • Mirkin BG, Fenner TI, Galperin MY, Koonin EV (2003) Algorithms for computing parsimonious evolutionary scenarios for genome evolution the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes. BMC Evol Biol 3:2
    • (2003) BMC Evol Biol , vol.3 , pp. 2
    • Mirkin, B.G.1    Fenner, T.I.2    Galperin, M.Y.3    Koonin, E.V.4
  • 15
    • 0037040394 scopus 로고    scopus 로고
    • Microbial minimalism: Genome reduction in bacterial pathogens
    • Moran NA (2002) Microbial minimalism: genome reduction in bacterial pathogens. Cell 108:583-586
    • (2002) Cell , vol.108 , pp. 583-586
    • Moran, N.A.1
  • 18
    • 0041828241 scopus 로고    scopus 로고
    • Scaling laws in the functional content of genomes
    • Nimwegen E (2003) Scaling laws in the functional content of genomes. Trends Genet 19:479-484
    • (2003) Trends Genet , vol.19 , pp. 479-484
    • Nimwegen, E.1
  • 19
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman H, Lawrence JG, Groisman EA (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 20
    • 0032945191 scopus 로고    scopus 로고
    • CORA - Topological fingerprints for protein structural families
    • Orengo CA (1999) CORA - topological fingerprints for protein structural families. Protein Sci 8:699-715
    • (1999) Protein Sci , vol.8 , pp. 699-715
    • Orengo, C.A.1
  • 22
    • 1042298811 scopus 로고    scopus 로고
    • Evolution of protein superfamilies and bacterial genome size
    • Ranea JA, Buchan DW, Thornton JM, Orengo CA (2004) Evolution of protein superfamilies and bacterial genome size. J Mol Biol 336:871-887
    • (2004) J Mol Biol , vol.336 , pp. 871-887
    • Ranea, J.A.1    Buchan, D.W.2    Thornton, J.M.3    Orengo, C.A.4
  • 23
    • 13144268590 scopus 로고    scopus 로고
    • Microeconomic principles explain an optimal genome size in bacteria
    • Ranea JA, Grant A, Thornton JM, Orengo CA (2005) Microeconomic principles explain an optimal genome size in bacteria. Trends Genet 21:21-25
    • (2005) Trends Genet , vol.21 , pp. 21-25
    • Ranea, J.A.1    Grant, A.2    Thornton, J.M.3    Orengo, C.A.4
  • 24
    • 33646369172 scopus 로고    scopus 로고
    • Micro(be)-economics
    • Ranea JA (2005) Micro(be)-economics. Heredity 96:337-338
    • (2005) Heredity , vol.96 , pp. 337-338
    • Ranea, J.A.1
  • 25
    • 0034618559 scopus 로고    scopus 로고
    • Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp APS
    • Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H (2000) Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp APS. Nature 407:81-86
    • (2000) Nature , vol.407 , pp. 81-86
    • Shigenobu, S.1    Watanabe, H.2    Hattori, M.3    Sakaki, Y.4    Ishikawa, H.5
  • 27
    • 33746108533 scopus 로고    scopus 로고
    • Pentose phosphate and Calvin cycles: Similarities and three-dimensional views
    • Sillero A, Selivanov VA, Cascante M (2006) Pentose phosphate and Calvin cycles: similarities and three-dimensional views. Biochem Mol Biol Edu 34:275-277
    • (2006) Biochem Mol Biol Edu , vol.34 , pp. 275-277
    • Sillero, A.1    Selivanov, V.A.2    Cascante, M.3
  • 28
    • 22244439883 scopus 로고    scopus 로고
    • Assessing strategies for improved superfamily recognition
    • Sillitoe I, Dibley M, Bray J, Addou S, Orengo C (2005) Assessing strategies for improved superfamily recognition. Protein Sci 14:1800-1810
    • (2005) Protein Sci , vol.14 , pp. 1800-1810
    • Sillitoe, I.1    Dibley, M.2    Bray, J.3    Addou, S.4    Orengo, C.5
  • 29
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov RL, Koonin EV, Lipman DJ (1997) A genomic perspective on protein families. Science 278:631-637
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 31
    • 0024349252 scopus 로고
    • Protein structure alignment
    • Taylor WR, Orengo CA (1989) Protein structure alignment. J Mol Biol 208:1-22
    • (1989) J Mol Biol , vol.208 , pp. 1-22
    • Taylor, W.R.1    Orengo, C.A.2
  • 32
    • 0035815113 scopus 로고    scopus 로고
    • Evolution of function in protein superfamilies from a structural perspective
    • Todd AE, Orengo CA, Thornton JM (2001) Evolution of function in protein superfamilies from a structural perspective. J Mol Biol 307:1113-1143
    • (2001) J Mol Biol , vol.307 , pp. 1113-1143
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3
  • 33
    • 0036681416 scopus 로고    scopus 로고
    • Scoring residue conservation
    • Valdar WS (2002) Scoring residue conservation. Proteins 48:227-241
    • (2002) Proteins , vol.48 , pp. 227-241
    • Valdar, W.S.1
  • 34
    • 0004053611 scopus 로고    scopus 로고
    • Voet D, Voet J, eds Wiley & Sons, New York
    • Voet D, Voet J, eds (2004) Biochemistry, 3rd ed. Wiley & Sons, New York
    • (2004) Biochemistry, 3rd Ed.
  • 36
    • 1442280725 scopus 로고    scopus 로고
    • Origins of life: Born in a watery commune
    • Whitfield J (2004) Origins of life: born in a watery commune. Nature 427:674-676
    • (2004) Nature , vol.427 , pp. 674-676
    • Whitfield, J.1
  • 37
    • 0032499698 scopus 로고    scopus 로고
    • The universal ancestor
    • Woese C (1998) The universal ancestor. Proc Natl Acad Sci USA 95:6854-6859
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 6854-6859
    • Woese, C.1
  • 38
    • 0037173066 scopus 로고    scopus 로고
    • On the evolution of cells
    • Woese CR (2002) On the evolution of cells. Proc Natl Acad Sci USA 99:8742-8747
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 8742-8747
    • Woese, C.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.