Degradation of Escherichia coli RecN aggregates by ClpXP protease and its implications for DNA damage tolerance

Journal of Biological Chemistry

Volumn 281, Issue 41, 2006, Pages 30941-30946

  Nagashima, Kohji ^a   Kubota, Yoshino ^a   Shibata, Tatsuya ^a   Sakaguchi, Chikako ^a   Shinagawa, Hideo ^a,b   Hishida, Takashi ^a  

^a OSAKA UNIVERSITY   (Japan)

^b BioAcademia Inc   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL VIABILITY; CHRONIC DNA DAMAGE; CYTOPLASM; PROTEOLYTIC REMOVAL;

CELLS; CHROMOSOMES; DEGRADATION; DNA; ENZYMES; FLUORESCENCE;

ESCHERICHIA COLI;

GREEN FLUORESCENT PROTEIN; PROTEIN CLPXP; PROTEINASE; RECN PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL VIABILITY; CONTROLLED STUDY; CYTOPLASM; DNA DAMAGE; ESCHERICHIA COLI; HALF LIFE TIME; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; WILD TYPE;

BACTERIAL PROTEINS; CYTOPLASM; DNA DAMAGE; DNA REPAIR; DNA RESTRICTION ENZYMES; ENDOPEPTIDASE CLP; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GREEN FLUORESCENT PROTEINS; MICROSCOPY, FLUORESCENCE; MITOMYCIN; NUCLEIC ACID SYNTHESIS INHIBITORS; PLASMIDS; PROTEIN STRUCTURE, TERTIARY; TIME FACTORS;

ESCHERICHIA COLI;

EID: 33750060718     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M606566200     Document Type: Article

References (39)

1. Cox, M. M., Goodman, M. F., Kreuzer, K. N., Sherratt, D. J., Sandler, S. J., and Marians, K. J. (2000) Nature 404, 37-41
2. Kowalczykowski, S. C. (2000) Trends Biochem. Sci. 25, 156-165
3. Lloyd, R. G., Picksley, S. M., and Prescott, C. (1983) Mol. Gen. Genet. 190, 162-167
4. Finch, P. W., Chambers, P., and Emmerson, P. T. (1985) J. Bacteriol. 164, 653-658
5. Sargentini, N. J., and Smith, K. C. (1983) Radiat. Res. 93, 461-478
6. Picksley, S. M., Attfield, P. V., and Lloyd, R. G. (1984) Mol. Gen. Genet. 195, 267-274
7. Wang, T. C., and Smith, K. C. (1988) J. Bacteriol. 170, 2555-2559
8. Meddows, T. R., Savory, A. P., Grove, J. I., Moore, T., and Lloyd, R. G. (2005) Mol. Microbiol. 57, 97-110
9. Haering, C. H., Lowe, J., Hochwagen, A., and Nasmyth, K. (2002) Mol. Cell 9, 773-788
10. Hirano, T. (2005) Philos. Trans. R. Soc. Lond. B Biol. Sci. 360, 507-514
11. Nasmyth, K. (2001) Annu. Rev. Genet. 35, 673-745
12. Yazdi, P. T., Wang, Y., Zhao, S., Patel, N., Lee, E. Y., and Qin, J. (2002) Genes Dev. 16, 571-582
13. Losada, A., and Hirano, T. (2005) Genes Dev. 19, 1269-1287
14. Lehmann, A. R. (2005) DNA Repair (Amst.) 4, 309-314
15. Haering, C. H., and Nasmyth, K. (2003) BioEssays 25, 1178-1191
16. Miller, J. H. (1992) A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
17. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
18. Datsenko, K. A., and Wanner, B. L. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 6640-6645
19. Tatsuta, T., Tomoyasu, T., Bukau, B., Kitagawa, M., Mori, H., Karata, K., and Ogura, T. (1998) Mol. Microbiol. 30, 583-593
20. Iwasaki, H., Shiba, T., Nakata, A., and Shinagawa, H. (1989) Mol. Gen. Genet. 219, 328-331
21. Shibata, T., Hishida, T., Kubota, Y., Han, Y. W., Iwasaki, H., and Shinagawa, H. (2005) Genes Cells 10, 181-191
22. Neher, S. B., Flynn, J. M., Sauer, R. T., and Baker, T. A. (2003) Genes Dev. 17, 1084-1089
23. Hishida, T., Han, Y. W., Shibata, T., Kubota, Y., Ishino, Y., Iwasaki, H., and Shinagawa, H. (2004) Genes Dev. 18, 1886-1897
24. Porankiewicz, J., Wang, J., and Clarke, A. K. (1999) Mol. Microbiol. 32, 449-458
25. Gottesman, S. (1999) Curr. Opin. Microbiol. 2, 142-147
26. Qu, J. N., Makino, S. I., Adachi, H., Koyama, Y., Akiyama, Y., Ito, K., Tomoyasu, T., Ogura, T., and Matsuzawa, H. (1996) J. Bacteriol. 178, 3457-3461
27. Katayama, Y., Gottesman, S., Pumphrey, J., Rudikoff, S., Clark, W. P., and Maurizi, M. R. (1988) J. Biol. Chem. 263, 15226-15236
28. Gottesman, S., Clark, W. P., de Crecy-Lagard, V., and Maurizi, M. R. (1993) J. Biol. Chem. 268, 22618-22626
29. Wang, J., Hartling, J. A., and Flanagan, J. M. (1998) J. Struct. Biol. 124, 151-163
30. Neher, S. B., Villen, J., Oakes, E. C., Bakalarski, C. E., Sauer, R. T., Gygi, S. P., and Baker, T. A. (2006) Mol. Cell 22, 193-204
31. Levchenko, I., Yamauchi, M., and Baker, T. A. (1997) Genes Dev. 11, 1561-1572
32. Gottesman, S., Roche, E., Zhou, Y., and Sauer, R. T. (1998) Genes Dev. 12, 1338-1347
33. Flynn, J. M., Neher, S. B., Kim, Y. I., Sauer, R. T., and Baker, T. A. (2003) Mol. Cell 11, 671-683
34. Keiler, K. C., Waller, P. R., and Sauer, R. T. (1996) Science 271, 990-993
35. Kidane, D., Sanchez, H., Alonso, J. C., and Graumann, P. L. (2004) Mol. Microbiol. 52, 1627-1639
36. Dobson, C. M. (2003) Nature 426, 884-890
37. Muchowski, P. J., and Wacker, J. L. (2005) Nat. Rev. Neurosci. 6, 11-22
38. Gonzalez, M., Rasulova, F., Maurizi, M. R., and Woodgate, R. (2000) EMBO J. 19, 5251-5258
39. Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., and Mori, H. (2006) Mol. Syst. Biol. 2, 2006.0008