Structure of the thiazole biosynthetic enzyme THI1 from Arabidopsis thaliana

Journal of Biological Chemistry

Volumn 281, Issue 41, 2006, Pages 30957-30966

  Godoi, Paulo H C ^a,b   Galhardo, Rodrigo S ^a   Luche, Douglas D ^a   Van Sluys, Marie Anne ^a   Menck, Carlos F M ^a   Oliva, Glaucius ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b BURNHAM INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RESPIRATION; SINGLE WAVELENGTH ANOMALOUS DIFFRACTION; THIAMIN PYROPHOSPHATE;

DIFFRACTION; FERMENTATION; MOLECULAR STRUCTURE; PHOTOSYNTHESIS; PROTACTINIUM;

ENZYMES;

2 CARBOXYLATE 4 METHYL 5 BETA (ETHYL ADENOSINE 5' DIPHOSPHATE)THIAZOLE; ARABIDOPSIS PROTEIN; DINUCLEOTIDE; PROTEIN THI1; THIAZOLE DERIVATIVE; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; CRYSTAL STRUCTURE; DIFFRACTION; EUKARYOTE; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; SITE DIRECTED MUTAGENESIS;

ADENOSINE TRIPHOSPHATE; AMINO ACID SEQUENCE; ARABIDOPSIS; ARABIDOPSIS PROTEINS; BINDING SITES; ESCHERICHIA COLI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; THIAMINE PYROPHOSPHATE; THIAZOLES;

ARABIDOPSIS THALIANA; EUKARYOTA;

EID: 33750054105     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M604469200     Document Type: Article

References (44)

1. Dugas, H. (1996) Bioorganic Chemistry, a Chemical Approach to Enzyme Action (Cantor, C. R., ed) pp. 560-573, Springer, New York
2. Singleton, C. K., and Martin, P. R. (2001) Curr. Mol. Med. 1, 197-207
3. Park, J. H., Dorrestein, P. C., Zhai, H., Kinsland, C., McLafferty, F. W., and Begley, T. P. (2003) Biochemistry 42, 12430-12438
4. Lawhorn, B. G., Mehl, R. A., and Begley, T. P. (2004) Org. Biomol. Chem. 2, 2538-2546
5. Xi, J., Ge, Y., Kinsland, C., McLafferty, F. W., and Begley, T. P. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 8513-8518
6. Settembre, E. C., Dorrestein, P. C., Chatterjee, A., McLafferty, F. W., Begley, T. P., and Ealick, S. E. (2004) Biochemistry 43, 11647-11657
7. Praekelt, U. M., Byrne, K. L., and Meacock, P. A. (1994) Yeast 10, 481-490
8. Wightman, R., and Meacock, P. A. (2003) Microbiology 149, 1447-1460
9. White, R. L., and Spenser, I. D. (1982) J. Am. Chem. Soc. 104, 4934-4943
10. Julliard, J., and Douce, R. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 2042-2045
11. White, R. L., and Spenser, I. D. (1979) Biochem. J. 179, 315-325
12. Tazuya, K., Yamada, K., Nakamura, K., and Kumaoka, H. (1987) Biochim. Biophys. Acta 924, 210-215
13. Machado, C. R., de Oliveira, R. C., Boiteux, S., Praekelt, U. M., Meacock, P. A., and Menck, C. F. (1996) Plant Mol. Biol. 31, 585-593
14. Machado, C. R., Praekelt, U. M., de Oliveira, R. C., Barbosa, A. C., Byme, K. L., Meacock, P. A., and Menck, C. F. (1997) J. Mol. Biol. 273, 114-121
15. Tong, L., and Rossmann, M. G. (1997) Methods Enzymol. 276, 594-611
16. Mattews, B. W. (1968) J. Mol. Biol. 33, 491-497
17. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
18. Terwilliger, T. C., and Berendzen, J. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 849-861
19. Terwilliger, T. C. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 965-972
20. Lamzin, V. S., Perrakis, A., and Wilson, K. S. (2001) in International Tables for Crystallography, Vol. F: Crystallography of Biological Macromolecules (Rossmann, M. G., and Arnold, E., eds) pp. 720-722, Kluwer Academic Publishers, Dordrecht, The Netherlands
21. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
22. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
23. CCP4 (Collaborative Computational Project, Number 4) (1994) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
24. Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Acta Crystallogr. Sect. D Biol. Crystallogr. 57, 122-133
25. Bond, C. S. (2003) Bioinformatics 19, 311-312
26. Wallace, A. C., Laskowski, R. A., and Thornton, J. M. (1995) Protein Eng. 8, 127-134
27. Ogur, M., St. John, R., and Nagai, S. (1957) Science 125, 928-929
28. Schena, M., Picard, D., and Yamamoto, K. R. (1991) Methods Enzymol. 194, 389-398
29. Papini-Terzi, F. S., Galhardo, R. S., Farias, L. P., Menck, C. F., and Van Sluys, M. A. (2003) Plant Cell Physiol. 44, 856-860
30. Dym, O., and Eisenberg, D. (2001) Protein Sci. 10, 1712-1728
31. Holm, L., and Sander, C. (1995) Trends Biochem. Sci. 20, 478-480
32. Shindyalov, J-F., and Bourne, P. (1998) Protein Eng. 11, 739-747
33. Pearl, F., Todd, A., Sillitoe, I., Dibley, M., Redfern, O., Lewis, T., Bennett, C., Marsden, R., Grant, A., Lee, D., Akpor, A., Maibaum, M., Harrison, A., Dallman, T., Reeves, G., Diboun, I., Addou, S., Lise, S., Johnston, C., Sillero, A., Thornton, J., and Orengo, C. (2005) Nucleic Acids Res. 33, D247-D251
34. Kleywegt, G. J., and Jones, T. A. (1997) Methods Enzymol. 277, 525-545
35. Settembre, E. C., Dorrestein, P. C., Park, J. H., Augustine, A. M., Begley, T. P., and Ealick, S. E. (2003) Biochemistry 42, 2971-2981
36. Faou, P., and Tropschug, M. (2004) J. Mol. Biol. 344, 1147-1157
37. Denessiouk, K. A., Rantanen, V.-V., and Johnson, M. S. (2001) Proteins 44, 282-291
38. Carugo, O., and Argos, P. (1997) Proteins 28, 10-28
39. Nelson, K. E., Clayton, R. A., Gill, S. R., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Nelson, W. C., Ketchum, K. A., McDonald, L., Utterback, T. R., Malek, J. A., Linher, K. D., Garrett, M. M., Stewart, A. M., Cotton, M. D., Pratt, M. S., Phillips, C. A., Richardson, D., Heidelberg, J., Sutton, G. G., Fleischmann, R. D., Eisen, J. A., White, O., Salzberg, S. L., Smith, H. O., Venter, J. C., and Fraser, C. M. (1999) Nature 399, 323-329
40. Wilkinson, A., Day, J., and Bowater, R. (2001) Mol. Microbiol. 40, 1241-1248
41. Faou, P., and Tropschug, M. (2003) J. Mol. Biol. 333, 831-844
42. Morett, E., Korbel, J. O., Rajan, E., Saab-Rincon, G., Olvera, L., Olvera, M., Schmidt, S., Snel, B., and Bork, P. (2003) Nat. Biotechnol. 21, 790-795
43. Medina-Silva, R., Barros, M. P., Galhardo, R. S., Netto, L. E., Colepicolo, P., and Menck, C. F. (2006) Res. Microbiol. 157, 275-281
44. Chatterjee, A., Jurgenson, C. T., Schroeder, F. C., Ealick, S. E., and Begley, T. P. (2006) J. Am. Chem. Soc. 128, 7158-7159