-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
3
-
-
20444482930
-
Investigation of the methanogen population structure and activity in a brackish lake sediment
-
Banning N, Brock F, Fry JC, Parkes RJ, Hornibrook ERC, Weightman AJ (2005) Investigation of the methanogen population structure and activity in a brackish lake sediment. Environ Microbiol 7:947-960
-
(2005)
Environ Microbiol
, vol.7
, pp. 947-960
-
-
Banning, N.1
Brock, F.2
Fry, J.C.3
Parkes, R.J.4
Hornibrook, E.R.C.5
Weightman, A.J.6
-
4
-
-
2342565752
-
Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages
-
Bano N, Ruffin S, Ransom B, Hollibaugh JT (2004) Phylogenetic composition of Arctic Ocean archaeal assemblages and comparison with Antarctic assemblages. Appl Environ Microbiol 70:781-789
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 781-789
-
-
Bano, N.1
Ruffin, S.2
Ransom, B.3
Hollibaugh, J.T.4
-
5
-
-
0036287239
-
Oceanography of the Canadian shelf of the Beaufort Sea: A setting for marine life
-
Carmack EC, MacDonald RW (2002) Oceanography of the Canadian shelf of the Beaufort Sea: a setting for marine life. Arctic 55:29-45
-
(2002)
Arctic
, vol.55
, pp. 29-45
-
-
Carmack, E.C.1
MacDonald, R.W.2
-
6
-
-
4544334844
-
Phytoplankton productivity on the Canadian Shelf of the Beaufort Sea
-
Carmack EC, MacDonald RW, Jasper S (2004) Phytoplankton productivity on the Canadian Shelf of the Beaufort Sea. Mar Ecol Prog Ser 277:37-50
-
(2004)
Mar Ecol Prog Ser
, vol.277
, pp. 37-50
-
-
Carmack, E.C.1
MacDonald, R.W.2
Jasper, S.3
-
7
-
-
0031853280
-
Magnitude and sources of sediment input to the Mackenzie Delta, Northwest Territories
-
Carson M, Jasper J, Conly F (1998) Magnitude and sources of sediment input to the Mackenzie Delta, Northwest Territories. Arctic 51:116-124
-
(1998)
Arctic
, vol.51
, pp. 116-124
-
-
Carson, M.1
Jasper, J.2
Conly, F.3
-
8
-
-
0141428760
-
Abundance and distribution of planktonic Archaea and bacteria in the waters west of the Antarctic Peninsula
-
Church MJ, DeLong EF, Ducklow HW, Karner MB, Preston CM, Karl DM (2003) Abundance and distribution of planktonic Archaea and bacteria in the waters west of the Antarctic Peninsula. Limnol Oceanogr 48:1893-1902
-
(2003)
Limnol Oceanogr
, vol.48
, pp. 1893-1902
-
-
Church, M.J.1
DeLong, E.F.2
Ducklow, H.W.3
Karner, M.B.4
Preston, C.M.5
Karl, D.M.6
-
9
-
-
0034051905
-
Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA
-
Crump BC, Baross JA (2000) Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA. FEMS Microbiol Ecol 31:231-239
-
(2000)
FEMS Microbiol Ecol
, vol.31
, pp. 231-239
-
-
Crump, B.C.1
Baross, J.A.2
-
10
-
-
28044457197
-
Synchrony and seasonality in bacterioplankton communities of two temperate rivers
-
Crump BC, Hobbie JE (2005) Synchrony and seasonality in bacterioplankton communities of two temperate rivers. Limnol Oceanogr 50:1718-1729
-
(2005)
Limnol Oceanogr
, vol.50
, pp. 1718-1729
-
-
Crump, B.C.1
Hobbie, J.E.2
-
11
-
-
33644866828
-
Temperature sensitivity of soil carbon decomposition and feedbacks to climate change
-
Davidson EA, Janssens IA (2006) Temperature sensitivity of soil carbon decomposition and feedbacks to climate change. Nature 440:165-173
-
(2006)
Nature
, vol.440
, pp. 165-173
-
-
Davidson, E.A.1
Janssens, I.A.2
-
12
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong E (1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
DeLong, E.1
-
13
-
-
0031769609
-
Everything in moderation: Archaea as 'non-extremophiles'
-
DeLong EF (1998) Everything in moderation: Archaea as 'non-extremophiles'. Curr Opin Genet Dev 8:649-654
-
(1998)
Curr Opin Genet Dev
, vol.8
, pp. 649-654
-
-
DeLong, E.F.1
-
14
-
-
0028594902
-
High abundance of Archaea in antarctic marine picoplankton
-
Delong EF, Wu KY, Prezelin BB, Jovine RVM (1994) High abundance of Archaea in antarctic marine picoplankton. Nature 371:695-697
-
(1994)
Nature
, vol.371
, pp. 695-697
-
-
Delong, E.F.1
Wu, K.Y.2
Prezelin, B.B.3
Jovine, R.V.M.4
-
15
-
-
0031910465
-
Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes
-
DeLong EF, King LL, Massana R, Cittone H, Murray A, Schleper C, Wakeham SG (1998) Dibiphytanyl ether lipids in nonthermophilic crenarchaeotes. Appl Environ Microbiol 64:1133-1138
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 1133-1138
-
-
DeLong, E.F.1
King, L.L.2
Massana, R.3
Cittone, H.4
Murray, A.5
Schleper, C.6
Wakeham, S.G.7
-
16
-
-
0037126867
-
Changes in bacterial and archaeal assemblages in an equatorial river induced by the water eutrophication of Petit Saut dam reservoir (French Guiana)
-
Dumestre JF, Casamayor EO, Massana R, Pedros-Alio C (2002) Changes in bacterial and archaeal assemblages in an equatorial river induced by the water eutrophication of Petit Saut dam reservoir (French Guiana). Aquat Microb Ecol 26:209-221
-
(2002)
Aquat Microb Ecol
, vol.26
, pp. 209-221
-
-
Dumestre, J.F.1
Casamayor, E.O.2
Massana, R.3
Pedros-Alio, C.4
-
17
-
-
0026525546
-
Novel major archaebacterial group from marine plankton
-
Fuhrman JA, McCallum K, Davis AA (1992) Novel major archaebacterial group from marine plankton. Nature 356:148-149
-
(1992)
Nature
, vol.356
, pp. 148-149
-
-
Fuhrman, J.A.1
McCallum, K.2
Davis, A.A.3
-
18
-
-
0242676203
-
Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen
-
Galand PE, Fritze H, Yrjala K (2003) Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen. Environ Microbiol 5:1133-1143
-
(2003)
Environ Microbiol
, vol.5
, pp. 1133-1143
-
-
Galand, P.E.1
Fritze, H.2
Yrjala, K.3
-
19
-
-
33644632151
-
Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem
-
Garneau ME, Vincent WF, Alonso-Sáez L, Gratton Y, Lovejoy C (2005) Prokaryotic community structure and heterotrophic production in a river-influenced coastal arctic ecosystem. Aquat Microb Ecol 42:27-40
-
(2005)
Aquat Microb Ecol
, vol.42
, pp. 27-40
-
-
Garneau, M.E.1
Vincent, W.F.2
Alonso-Sáez, L.3
Gratton, Y.4
Lovejoy, C.5
-
20
-
-
6944246004
-
Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: Effect of temperature
-
Glissman K, Chin KJ, Casper P, Conrad R (2004) Methanogenic pathway and archaeal community structure in the sediment of eutrophic Lake Dagow: effect of temperature. Microb Ecol 48:389-399
-
(2004)
Microb Ecol
, vol.48
, pp. 389-399
-
-
Glissman, K.1
Chin, K.J.2
Casper, P.3
Conrad, R.4
-
21
-
-
0042029329
-
Microbial ecology of an extreme acidic environment, the Tinto River
-
Gonzalez-Toril E, Llobet-Brossa E, Casamayor EO, Amann R, Amils R (2003) Microbial ecology of an extreme acidic environment, the Tinto River. Appl Environ Microbiol 69:4853-4865
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4853-4865
-
-
Gonzalez-Toril, E.1
Llobet-Brossa, E.2
Casamayor, E.O.3
Amann, R.4
Amils, R.5
-
22
-
-
2542508293
-
Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
-
Grosskopf R, Janssen PH, Liesack W (1998a) Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl Environ Microbiol 64:960-969
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 960-969
-
-
Grosskopf, R.1
Janssen, P.H.2
Liesack, W.3
-
23
-
-
0040336333
-
Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms
-
Grosskopf R, Stubner S, Liesack W (1998b) Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microbiol 64:4983-4989
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4983-4989
-
-
Grosskopf, R.1
Stubner, S.2
Liesack, W.3
-
24
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting,position-specific gap penalties and weight matrix choice
-
Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting,position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Higgins, D.1
Thompson, J.2
Gibson, T.3
Thompson, J.D.4
Higgins, D.G.5
Gibson, T.J.6
-
25
-
-
0033771975
-
Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
-
Jurgens G, Glockner FO, Amann R, Saano A, Montonen L, Likolammi M, Munster U (2000) Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 34:45-56
-
(2000)
FEMS Microbiol Ecol
, vol.34
, pp. 45-56
-
-
Jurgens, G.1
Glockner, F.O.2
Amann, R.3
Saano, A.4
Montonen, L.5
Likolammi, M.6
Munster, U.7
-
26
-
-
0035945618
-
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
-
Karner MB, DeLong EF, Karl DM (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature 409:507-510
-
(2001)
Nature
, vol.409
, pp. 507-510
-
-
Karner, M.B.1
DeLong, E.F.2
Karl, D.M.3
-
27
-
-
0142186057
-
Archaeal nucleic acids in picoplankton from great lakes on three continents
-
Keough BP, Schmidt TM, Hicks RE (2003) Archaeal nucleic acids in picoplankton from great lakes on three continents. Microb Ecol 46:238-248
-
(2003)
Microb Ecol
, vol.46
, pp. 238-248
-
-
Keough, B.P.1
Schmidt, T.M.2
Hicks, R.E.3
-
28
-
-
4143075890
-
Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York
-
Kirchman DL, Dittel AI, Findlay SEG, Fischer D (2004) Changes in bacterial activity and community structure in response to dissolved organic matter in the Hudson River, New York. Aquat Microb Ecol 35:243-257
-
(2004)
Aquat Microb Ecol
, vol.35
, pp. 243-257
-
-
Kirchman, D.L.1
Dittel, A.I.2
Findlay, S.E.G.3
Fischer, D.4
-
29
-
-
0004064121
-
Protocols for the Joint Global Ocean Flux Study (JGOFS) core measurements
-
Knap A, Michaels A, Close A, Ducklow H, Dickson A (eds) reprint of the IOC manuals and guides No. 29, UNESCO, Paris
-
Knap A, Michaels A, Close A, Ducklow H, Dickson A (eds) (1996) Protocols for the Joint Global Ocean Flux Study (JGOFS) core measurements. JGOFS Report No. 19, reprint of the IOC manuals and guides No. 29, Vol 19. UNESCO, Paris,
-
(1996)
JGOFS Report No. 19
, vol.19
-
-
-
30
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Konneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437: 543-546
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
31
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
-
Massana R, Murray AE, Preston CM, DeLong EF (1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel. Appl Environ Microbiol 63:50-56
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 50-56
-
-
Massana, R.1
Murray, A.E.2
Preston, C.M.3
DeLong, E.F.4
-
32
-
-
0034114417
-
A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces
-
Massana R, DeLong EF, Pedros-Alio C, Murray AE, Preston CM (2000) A few cosmopolitan phylotypes dominate planktonic archaeal assemblages in widely different oceanic provinces. Appl Environ Microbiol 66:1777-1787
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1777-1787
-
-
Massana, R.1
DeLong, E.F.2
Pedros-Alio, C.3
Murray, A.E.4
Preston, C.M.5
-
33
-
-
0031814110
-
Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica
-
Murray AE, Preston CM, Massana R, Taylor LT, Blakis A, Wu K, DeLong EF (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl Environ Microbiol 64:2585-2595
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2585-2595
-
-
Murray, A.E.1
Preston, C.M.2
Massana, R.3
Taylor, L.T.4
Blakis, A.5
Wu, K.6
DeLong, E.F.7
-
34
-
-
0003071093
-
Comparison of different methods for chlorophyll and phaeopigment determination
-
Nusch E (1980) Comparison of different methods for chlorophyll and phaeopigment determination. Arch Hydrobiol 14:14-36
-
(1980)
Arch Hydrobiol
, vol.14
, pp. 14-36
-
-
Nusch, E.1
-
35
-
-
0042853314
-
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
-
Ochsenreiter T, Selezi D, Quaiser A, Bonch-Osmolovskaya L, Schleper C (2003) Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR. Environ Microbiol 5:787-797
-
(2003)
Environ Microbiol
, vol.5
, pp. 787-797
-
-
Ochsenreiter, T.1
Selezi, D.2
Quaiser, A.3
Bonch-Osmolovskaya, L.4
Schleper, C.5
-
36
-
-
0030805150
-
Distribution of bacterioplankton in meromictic lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
-
Ovreas L, Forney L, Daae FL, Torsvik V (1997) Distribution of bacterioplankton in meromictic lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 63:3367-3373
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3367-3373
-
-
Ovreas, L.1
Forney, L.2
Daae, F.L.3
Torsvik, V.4
-
37
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501-1506
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
38
-
-
4644275463
-
Integration of microbial ecology and statistics: A test to compare gene libraries
-
Schloss PD, Larget BR, Handelsman J (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70:5485-5492
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5485-5492
-
-
Schloss, P.D.1
Larget, B.R.2
Handelsman, J.3
-
39
-
-
0036795083
-
Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
-
Sekiguchi H, Watanabe M, Nakahara T, Xu BH, Uchiyama H (2002) Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl Environ Microbiol 68:5142-5150
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5142-5150
-
-
Sekiguchi, H.1
Watanabe, M.2
Nakahara, T.3
Xu, B.H.4
Uchiyama, H.5
-
40
-
-
0033946736
-
Observational evidence of recent change in the northern high-latitude environment
-
Serreze MC, Walsh JE, Chapin FS, Osterkamp T and 6 others (2000) Observational evidence of recent change in the northern high-latitude environment. Clim Change 46: 159-207
-
(2000)
Clim Change
, vol.46
, pp. 159-207
-
-
Serreze, M.C.1
Walsh, J.E.2
Chapin, F.S.3
Osterkamp, T.4
-
41
-
-
26244431747
-
The extent of protist diversity: Insights from molecular ecology of freshwater eukaryotes
-
Slapeta J, Moreira D, López-García P (2005) The extent of protist diversity: insights from molecular ecology of freshwater eukaryotes. Proc R Soc Lond B 272:2073-2081
-
(2005)
Proc R Soc Lond B
, vol.272
, pp. 2073-2081
-
-
Slapeta, J.1
Moreira, D.2
López-García, P.3
-
44
-
-
0036046654
-
Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France)
-
Troussellier M, Schafer H, Batailler N, Bernard L and 5 others (2002) Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France). Aquat Microb Ecol 28:13-24
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 13-24
-
-
Troussellier, M.1
Schafer, H.2
Batailler, N.3
Bernard, L.4
-
45
-
-
0037434690
-
Abundance of bacteria, the cytophaga-flavobacterium cluster and Archaea in cold oligotrophic waters and nepheloid layers of the Northwest Passage, Canadian Archipelago
-
Wells LE, Deming JW (2003) Abundance of bacteria, the cytophaga-flavobacterium cluster and Archaea in cold oligotrophic waters and nepheloid layers of the Northwest Passage, Canadian Archipelago. Aquat Microb Ecol 31: 19-31
-
(2003)
Aquat Microb Ecol
, vol.31
, pp. 19-31
-
-
Wells, L.E.1
Deming, J.W.2
-
46
-
-
32944461244
-
Archaea in particle-rich waters of the Beaufort Shelf and Franklin Bay, Canadian Arctic: Clues to an allochthonous origin?
-
Wells LE, Cordray M, Bowerman S, Miller LA, Vincent WF, Deming JW (2006) Archaea in particle-rich waters of the Beaufort Shelf and Franklin Bay, Canadian Arctic: clues to an allochthonous origin? Limnol Oceanogr 51:47-59
-
(2006)
Limnol Oceanogr
, vol.51
, pp. 47-59
-
-
Wells, L.E.1
Cordray, M.2
Bowerman, S.3
Miller, L.A.4
Vincent, W.F.5
Deming, J.W.6
-
47
-
-
0022214221
-
Analysis: Organic matter
-
Head P (ed) Cambridge University Press, Cambridge
-
Williams P (1985) Analysis: organic matter. In: Head P (ed) Practical estuarine chemistry: a handbook. Cambridge University Press, Cambridge, p 160-200
-
(1985)
Practical Estuarine Chemistry: A Handbook
, pp. 160-200
-
-
Williams, P.1
-
48
-
-
1042268349
-
Streamflow in the Mackenzie Basin, Canada
-
Woo MK, Thorne R (2003) Streamflow in the Mackenzie Basin, Canada. Arctic 56:328-340
-
(2003)
Arctic
, vol.56
, pp. 328-340
-
-
Woo, M.K.1
Thorne, R.2
|