Penicillium purpurogenum produces a family 1 acetyl xylan esterase containing a carbohydrate-binding module: characterization of the protein and its gene

Mycological Research

Volumn 110, Issue 10, 2006, Pages 1129-1139

  Gordillo, Felipe ^a   Caputo, Valentina ^a   Peirano, Alessandra ^a   Chavez, Renato ^a,b   Van Beeumen, Jozef ^c   Vandenberghe, Isabel ^c   Claeyssens, Marc ^c   Bull, Paulina ^a   Ravanal, María Cristina ^d   Eyzaguirre, Jaime ^a,d  

^a PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE   (Chile)

^b UNIVERSIDAD DE SANTIAGO DE CHILE   (Chile)

^c GHENT UNIVERSITY   (Belgium)

^d UNIVERSIDAD ANDRÉS BELLO   (Chile)

Author keywords

AXE genes; Enzymes; Gene regulation; Xylan biodegradation

Indexed keywords

ACETYLESTERASE; ACETYLXYLAN ESTERASE; FUNGAL PROTEIN; PRIMER DNA; RECOMBINANT PROTEIN;

CARBOHYDRATE; ENZYME ACTIVITY; FUNGUS; GENE EXPRESSION; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; ENZYME ACTIVE SITE; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; KINETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PENICILLIUM; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

ACETYLESTERASE; AMINO ACID SEQUENCE; BASE SEQUENCE; CATALYTIC DOMAIN; DNA PRIMERS; FUNGAL PROTEINS; KINETICS; MOLECULAR SEQUENCE DATA; PENICILLIUM; POLYMERASE CHAIN REACTION; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

HYPOCREA JECORINA; PENICILLIUM PURPUROGENUM;

EID: 33750017102     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2006.07.003     Document Type: Article

References (44)

1. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 215 (1990) 403-410
2. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seideman J.G., Smith J.A., and Struhl K. Current Protocols in Molecular Biology Vol. 2 (1992), Wiley-Interscience, New York
3. Bainbridge B.W., Spreadbury C.L., Scalise F.G., and Cohen J. Improved method for the preparation of high molecular weight DNA from large and small scale cultures of filamentous fungi. FEMS Microbiology Letters 66 (1990) 113-118
4. Ballance D.J. Sequences important for gene expression in filamentous fungi. Yeast 2 (1986) 229-236
5. Belancic A., Scarpa J., Peirano A., Díaz R., Steiner J., and Eyzaguirre J. Penicillium purpurogenum produces several xylanases: purification and properties of two of the enzymes. Journal of Biotechnology 41 (1995) 71-79
6. Biely P. Microbial xylanolytic enzymes. Trends in Biotechnology 3 (1985) 286-290
7. Brakhage A.A., Andrianopoulos A., Kato M., Steidl S., Davis M.A., Tsukagoshi N., and Hynes M.J. HAP-like CCAAT-binding complexes in filamentous fungi: implications for biotechnology. Fungal Genetics and Biology 27 (1999) 243-252
8. Chávez R., Almarza C., Schachter K., Peirano A., Bull P., and Eyzaguirre J. Structure analysis of the endoxylanase A gene from Penicillium purpurogenum. Biological Research 34 (2001) 217-226
9. Chávez R., Fierro F., Gordillo F., Martín J.F., and Eyzaguirre J. Electrophoretic karyotype of the filamentous fungus Penicillium purpurogenum and chromosomal location of several xylanolytic genes. FEMS Microbiology Letters 205 (2001) 379-383
10. Chávez R., Schachter K., Navarro C., Peirano A., Aguirre C., Bull P., and Eyzaguirre J. Differences in expression of two endoxylanase genes (xynA and xynB) from Penicillium purpurogenum. Gene 293 (2002) 161-168
11. Chávez R., Schachter K., Navarro C., Peirano A., Bull P., and Eyzaguirre J. The acetyl xylan esterase II gene from Penicillium purpurogenum is differentially expressed in several carbon sources, and tightly regulated by pH. Biological Research 37 (2004) 107-113
12. Chung H.-J., Park S.-M., Kim H.-R., Yang M.-S., and Kim D.-H. Cloning the gene encoding acetyl xylan esterase from Aspergillus ficuum and its expression in Pichia pastoris. Enzyme and Microbial Technology 31 (2002) 384-391
13. Coutinho P., and Henrissat B. Carbohydrate-active enzymes: an integrated database approach. In: Gilbert H.J., Davies G.J.B., Henrissat B., and Svensson B. (Eds). Recent Advances of Carbohydrate Bioengineering (1999), Royal Society of Chemistry, Cambridge 3-12
14. Crepin V.F., Faulds C.B., and Connerton I.F. A non-modular type B feruloyl esterase from Neurospora crassa exhibits concentration-dependent substrate inhibition. Biochemical Journal 370 (2003) 411-427
15. Cubero B., and Scazzochio C. Two different, adjacent and divergent zinc finger binding sites are necessary for CREA-mediated carbon catabolite repression in the proline gene cluster of Aspergillus nidulans. EMBO Journal 13 (1994) 407-415
16. De Ioannes P., Peirano A., Steiner J., and Eyzaguirre J. An α-l arabinofuranosidase from Penicillium purpurogenum: production, purification and properties. Journal of Biotechnology 76 (2000) 253-258
17. Depiereux E., and Feytmans E. Simultaneous and multivariate alignment of protein sequences: correspondence between physicochemical profiles and structurally conserved regions (SRC). Protein Engineering 4 (1991) 603-613
18. Díaz R., Sapag A., Peirano A., Steiner J., and Eyzaguirre J. Cloning, sequencing and expression of the cDNA of endoxylanase B from Penicillium purpurogenum. Gene 187 (1997) 247-251
19. Egaña L., Gutiérrez R., Caputo V., Peirano A., Steiner J., and Eyzaguirre J. Purification and characterization of two acetyl xylan esterases from Penicillium purpurogenum. Biotechnology and Applied Biochemistry 24 (1996) 33-39
20. Faulds C.B., Molina R., González R., Husband F., Juge N., Sanz-Aparicio J., and Hermoso J. Probing the determinants of substrate specificity of a feruloyl esterase, AnFaeA, from Aspergillus niger. FEBS Journal 272 (2005) 4362-4371
21. Ghosh D., Erman M., Sawicki M., Lala P., Weeks D.R., Li N., Pangborn W., Thiel D.J., Jörnvall H., Gutiérrez R., and Eyzaguirre J. Determination of a protein structure by iodination: the structure of iodinated acetylxylan esterase. Acta Crystallographica Section D, Biological Crystallography 55 (1999) 779-784
22. Ghosh D., Sawicki M., Lala P., Erman M., Pangborn W., Eyzaguirre J., Gutiérrez R., Jörnvall H., and Thiel D.J. Multiple conformations of catalytic serine and histidine in acetylxylan esterase at 0.90 Å. Journal of Biological Chemistry 276 (2001) 11159-11166
23. Gutiérrez R., Cederlund E., Hjelmqvist L., Peirano A., Herrera F., Ghosh D., Duax W., Jörnvall H., and Eyzaguirre J. Acetyl xylan esterase II from Penicillium purpurogenum is similar to an acetyl esterase from Trichoderma reeesei but lacks a cellulose binding domain. FEBS Letters 423 (1998) 35-38
24. Harrison M.J., Wathugala I.M., Tenkanen M., Packer N.H., and Nevalainen K.M. Glycosylation of acetylxylan esterase from Trichoderma reesei. Glycobiology 12 (2002) 291-298
25. Hidalgo M., Steiner J., and Eyzaguirre J. β-Glucosidase from Penicillium purpurogenum: purification and properties. Biotechnology and Applied Biochemistry 15 (1992) 185-191
26. Jendrossek D., Frisse A., Behrends A., Yermann M., Kratzin H.D., Stannislawsky T., and Schlegel H.G. Biochemical and molecular characterization of the Pseudomonas lemoignei polyhydroxyalkanoate depolymerase system. Journal of Bacteriolology 177 (1995) 596-607
27. Johnson K.G., Fontana J.D., and MacKenzie C.R. Measurement of acetylxylan esterase in Streptomyces. Methods in Enzymology 160 (1988) 552-560
28. Joseleau J.P., Comptat J., and Ruel K. Chemical structure of xylans and their interaction in the plant cell wall. Progress in Biotechnology 7 (1992) 1-15
29. Koerner T.J., Hill H.E., Myers A.M., and Tzagoloff A. High-expression vectors with multiple cloning sites for construction of trpE fusion genes: pATH vectors. Methods in Enzymology 194 (1991) 477-490
30. Koseki T., Furuse S., Iwano K., Sakai H., and Matsusawa H. An Aspergillus awamori acetylesterase: purification of the enzyme, and cloning and sequencing of the gene. Biochemical Journal 326 (1997) 485-490
31. Koseki T., Miwa Y., Fushinobu S., and Hashizume K. Biochemical characterization of recombinant acetyl xylan esterase from Aspergillus awamori expressed in Pichia pastoris: mutational analysis of catalytic residues. Biochimica et Biophysica Acta 1749 (2005) 7-13
32. Koseki T., Miwa Y., Akao T., Akita O., and Hashizume K. An Aspergillus oryzae acetyl xylan esterase: molecular cloning and characteristics of recombinant enzyme expressed in Pichia pastoris. Journal of Biotechnology 121 (2006) 381-389
33. Kroon P.A., Williamson G., Fish N.M., Archer D.B., and Belshaw N.J. A modular esterase from Penicillium funiculosum releases ferulic acid from plant cell walls and binds crystalline cellulose contains a carbohydrate binding module. European Journal of Biochemistry 267 (2000) 6740-6752
34. Kulmburg P., Judevicz N., Mathieu M., Lenouvel F., Sequeval D., and Felenbok B. Specific binding sites for the activator protein ALCR, in the alcA promoter of the ethanol regulon of Aspergillus nidulans. Journal of Biological Chemistry 267 (1992) 21146-21153
35. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of the bacteriophage T4. Nature 227 (1970) 680-685
36. Mandels M., and Weber J. The production of cellulases. Advances in Chemistry Series 95 (1969) 391-414
37. Margolles-Clark E., Tenkanen M., Söderlund H., and Pentillä M. Acetyl xylan esterase from Trichoderma reesei contains an active-site serine residue and a cellulose-binding domain. European Journal of Biochemistry 237 (1996) 553-560
38. Merika M., and Orkin S.H. DNA-binding specificity of GATA family transcription factors. Molecular and Cellular Biology 13 (1993) 3999-4010
39. Tan L.U.L., Chan M.K.-H., and Saddler J.N. A modification of the Lowry method for detecting proteins in media containing lignocellulosic substrates. Biotechnology Letters 6 (1984) 199-304
40. Tenkanen M., Eyzaguirre J., Isoniemi R., Faulds C.B., and Biely P. Comparison of catalytic properties of acetyl xylan esterases from three carbohydrate esterase families. ACS Symposium Series 855 (2003) 211-229
41. Tilburn J., Sarkar S., Widdick D.A., Espeso E.A., Orejas M., Mungroo J., Penalva M.A., and Arst Jr. H.N. The Aspergillus PacC zinc finger transcription factor mediates regulation of both acid- and alkaline-expressed genes by ambient pH. EMBO Journal 14 (1995) 779-790
42. Tomme P., Warren A.J., Miller Jr. R.C., Kilburn D.G., and Gilkes N.R. Cellulose-binding domains: classification and properties. ACS Symposium Series 618 (1995) 142-163
43. van Peij N.N., Gielkens M.M., de Vries R.P., Visser J., and de Graaff L.H. The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Applied and Environmental Microbiology 64 (1998) 3615-3619
44. Wong K.K., Tan L.U., and Saddler J.N. Multiplicity of beta-1,4-xylanase in micro-organisms: functions and applications. Microbiological Reviews 52 (1988) 305-317